Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0117700-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:926031:929928:-1 gene:Os02g0117700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UDP-GLUCOSE PYROPHOSPHORYLASE 2 description:UDPase (Os02t0117700-01)
Sequence

ATGGCGGACGAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGT
GACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGTGGCGAGGAGGAG
CATGTGGAATGGGCAAAGATCCACACGCCGACGGACGAGGTGGTGGTGCCGTACGACACC
CTGGCGGCGCCGCCGGAGGACTTGGAGGAGACCAAGAAGCTGCTCAACAAGCTCGCCGTG
CTCAAGCTCAACGGCGGCCTCGGCACCACCATGGGATGCACCGGACCAAAATCGGTCATC
GAAGTGCGCAACGGATTCACATTCCTCGACTTGATTGTGATCCAGATCGAGTCCCTCAAC
AAGAAGTATGGCAGCAATGTCCCACTGCTTCTGATGAACTCATTCAACACCCATGAAGAC
ACCTTGAAGATTGTTGAGAAATACACCAATTCGAACATTGAAGTCCATACTTTCAATCAG
AGCCAGTATCCTCGTGTGGTAGCCGATGAGTTCTTGCCATGGCCTTCCAAGGGGAAGACC
TGCAAGGATGGCTGGTACCCTCCTGGCCATGGTGATATCTTCCCATCCCTGATGAACAGT
GGCAAGCTTGATTTGTTACTTTCACAGGGAAAGGAGTATGTGTTCATTGCAAACTCAGAT
AACTTGGGTGCTATAGTGGACATGAAGATACTGAACCATTTGATCCACAAACAGAATGAA
TATTGCATGGAGGTTACCCCGAAAACTCTGGCTGATGTTAAAGGTGGCACACTGATCTCA
TATGAAGACAAGGTTCAGCTCCTGGAGATTGCACAAGTTCCTGATGCACATGTGAATGAA
TTCAAATCCATCGAGAAATTCAAGATCTTCAACACGAACAATCTATGGGTGAACTTGAAG
GCTATCAAGCGCCTTGTTGAGGCTGATGCACTAAAGATGGAGATCATTCCAAACCCTAAG
GAAGTGGATGGAGTTAAAGTTCTTCAGTTGGAAACAGCAGCTGGTGCAGCAATCAGGTTC
TTTGATCACGCAATTGGTATCAATGTTCCAAGGTCCCGGTTCCTACCAGTGAAGGCAACA
TCAGATTTGCAGCTAGTACAGTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGC
AACCCGGCCAGAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAG
GTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTG
AAGGTTTCCGGTGATGTTTGGTTTGGCTCTAGCATCACATTGAAGGGCAAGGTGACCATC
ACAGCCCAACCTGGTGTCAAACTGGAAATCCCAGATGGAGCAGTGATCGAGAACAAGGAT
ATCAATGGCCCCGAGGACCTTTGA

Peptide Sequence

PEP ID

Os02t0117700-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:926031:929928:-1 gene:Os02g0117700 transcript:Os02t0117700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UDP-GLUCOSE PYROPHOSPHORYLASE 2 description:UDPase (Os02t0117700-01)
Sequence

MADEKLAKLREAVAGLSQISDNEKSGFISLVARYLSGEEEHVEWAKIHTPTDEVVVPYDT
LAAPPEDLEETKKLLNKLAVLKLNGGLGTTMGCTGPKSVIEVRNGFTFLDLIVIQIESLN
KKYGSNVPLLLMNSFNTHEDTLKIVEKYTNSNIEVHTFNQSQYPRVVADEFLPWPSKGKT
CKDGWYPPGHGDIFPSLMNSGKLDLLLSQGKEYVFIANSDNLGAIVDMKILNHLIHKQNE
YCMEVTPKTLADVKGGTLISYEDKVQLLEIAQVPDAHVNEFKSIEKFKIFNTNNLWVNLK
AIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDHAIGINVPRSRFLPVKAT
SDLQLVQSDLYTLVDGFVTRNPARTNPSNPSIELGPEFKKVGCFLGRFKSIPSIVELDTL
KVSGDVWFGSSITLKGKVTITAQPGVKLEIPDGAVIENKDINGPEDL

Transcript Sequence

Transcript ID

Os02t0117700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:926031:929928:-1 gene:Os02g0117700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:UDP-GLUCOSE PYROPHOSPHORYLASE 2 description:UDPase (Os02t0117700-01)
Sequence

GATCCGATCCGATTCATCTGTCTCATCAGATCAGCGTGAAGCAGCGGCAAGAACACAAAA
ATGGCGGACGAGAAGCTCGCCAAGCTGCGTGAAGCCGTCGCCGGCCTCTCGCAGATCAGT
GACAACGAGAAGTCCGGGTTCATCAGCCTCGTCGCCCGCTACCTCAGTGGCGAGGAGGAG
CATGTGGAATGGGCAAAGATCCACACGCCGACGGACGAGGTGGTGGTGCCGTACGACACC
CTGGCGGCGCCGCCGGAGGACTTGGAGGAGACCAAGAAGCTGCTCAACAAGCTCGCCGTG
CTCAAGCTCAACGGCGGCCTCGGCACCACCATGGGATGCACCGGACCAAAATCGGTCATC
GAAGTGCGCAACGGATTCACATTCCTCGACTTGATTGTGATCCAGATCGAGTCCCTCAAC
AAGAAGTATGGCAGCAATGTCCCACTGCTTCTGATGAACTCATTCAACACCCATGAAGAC
ACCTTGAAGATTGTTGAGAAATACACCAATTCGAACATTGAAGTCCATACTTTCAATCAG
AGCCAGTATCCTCGTGTGGTAGCCGATGAGTTCTTGCCATGGCCTTCCAAGGGGAAGACC
TGCAAGGATGGCTGGTACCCTCCTGGCCATGGTGATATCTTCCCATCCCTGATGAACAGT
GGCAAGCTTGATTTGTTACTTTCACAGGGAAAGGAGTATGTGTTCATTGCAAACTCAGAT
AACTTGGGTGCTATAGTGGACATGAAGATACTGAACCATTTGATCCACAAACAGAATGAA
TATTGCATGGAGGTTACCCCGAAAACTCTGGCTGATGTTAAAGGTGGCACACTGATCTCA
TATGAAGACAAGGTTCAGCTCCTGGAGATTGCACAAGTTCCTGATGCACATGTGAATGAA
TTCAAATCCATCGAGAAATTCAAGATCTTCAACACGAACAATCTATGGGTGAACTTGAAG
GCTATCAAGCGCCTTGTTGAGGCTGATGCACTAAAGATGGAGATCATTCCAAACCCTAAG
GAAGTGGATGGAGTTAAAGTTCTTCAGTTGGAAACAGCAGCTGGTGCAGCAATCAGGTTC
TTTGATCACGCAATTGGTATCAATGTTCCAAGGTCCCGGTTCCTACCAGTGAAGGCAACA
TCAGATTTGCAGCTAGTACAGTCTGATCTATATACCTTGGTTGATGGCTTTGTTACACGC
AACCCGGCCAGAACAAACCCATCGAATCCCTCAATTGAACTGGGTCCAGAGTTCAAGAAG
GTCGGGTGTTTCCTTGGTCGCTTCAAGTCAATCCCCAGCATTGTTGAGCTTGACACCTTG
AAGGTTTCCGGTGATGTTTGGTTTGGCTCTAGCATCACATTGAAGGGCAAGGTGACCATC
ACAGCCCAACCTGGTGTCAAACTGGAAATCCCAGATGGAGCAGTGATCGAGAACAAGGAT
ATCAATGGCCCCGAGGACCTTTGAGCGAAAGGATGCAGAGTTCACAAAGAGAGATCATAT
CACCATTCCATATAATCAATCAAGCTCCACGACATTGTGGAGAATATTTTTGATCCAATA
TTGCTTCGGCATAAGGAATAACAAAATTAGTACATGTCTTTTACCTACTTGACTTTGCTT
CTTGTTCTATTTTCTCCTTGTGAGTGGGCAAACAAGTCATGTCCCGGCAAAATATCATAT
GAACATATTTGGTTACATATCTGTTCAACAATCAGCAAGAAAACAAAATGTTATAATTCC
ATTAACGTTTGTCACTAAAACCTGTG