Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0112600-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:667264:669053:-1 gene:Os02g0112600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIGH AFFINITY NITRATE TRANSPORTER description:High-affinity nitrate transporter, Nitrate uptake, Nitrate transport (Os02t0112600-01)
Sequence

ATGGACTCGTCGACGGTGGGCGCTCCGGGGAGCTCGCTGCACGGCGTGACGGGGCGCGAG
CCGGCGTTCGCGTTCTCGACGGAGGTGGGCGGCGAGGACGCGGCGGCGGCGAGCAAGTTC
GACTTGCCGGTGGACTCGGAGCACAAGGCGAAGACGATCAGGTTGCTGTCGTTCGCGAAC
CCGCATATGAGGACGTTCCACCTATCATGGATCTCCTTCTTCTCCTGCTTCGTCTCCACC
TTCGCCGCCGCCCCTCTCGTCCCCATCATCCGCGACAACCTCAACCTCACCAAGGCCGAC
ATCGGCAACGCCGGCGTCGCCTCCGTCTCCGGCTCCATCTTCTCCAGGCTCGCCATGGGC
GCCATCTGCGACATGCTCGGCCCGCGCTACGGCTGCGCCTTCCTCATCATGCTCGCCGCG
CCCACCGTCTTCTGCATGTCGCTCATCGACTCCGCCGCGGGGTACATCGCCGTGCGCTTC
CTCATCGGCTTCTCCCTCGCCACCTTCGTGTCATGCCAGTACTGGATGAGCACCATGTTC
AACAGCAAGATCATCGGCCTCGTCAACGGCCTCGCCGCCGGGTGGGGAAACATGGGCGGC
GGCGCGACGCAGCTCATCATGCCGCTCGTCTACGACGTGATCCGCAAGTGCGGCGCGACG
CCGTTCACGGCGTGGAGGCTGGCCTACTTCGTGCCGGGGACGCTGCACGTGGTGATGGGC
GTGCTGGTGCTGACGCTGGGGCAGGACCTCCCCGACGGCAACCTGCGCAGCCTGCAGAAG
AAGGGTGACGTCAACAGGGACAGCTTCTCCAGGGTGCTCTGGTACGCCGTCACCAACTAC
CGCACCTGGATCTTCGTCCTCCTCTACGGCTACTCCATGGGCGTCGAGCTCACCACCGAC
AACGTCATCGCCGAGTACTTCTACGATCGCTTCGACCTCGACCTCCGCGTCGCCGGCATC
ATCGCCGCATCCTTCGGCATGGCCAACATCGTCGCGCGCCCCACCGGCGGCCTCCTCTCG
GACCTCGGCGCGCGCTACTTCGGCATGCGCGCCCGCCTCTGGAACATTTGGATCCTCCAG
ACCGCCGGCGGCGCGTTCTGCCTCCTGCTCGGCCGCGCATCCACCCTCCCCACCTCCGTC
GTCTGCATGGTCCTCTTCTCCTTCTGCGCGCAGGCCGCCTGCGGCGCCATCTTCGGCGTC
ATCCCCTTCGTCTCCCGCCGCTCGCTCGGCATCATCTCCGGCATGACCGGCGCCGGCGGC
AACTTCGGCGCCGGGCTCACGCAGCTGCTCTTCTTCACGTCGTCGAGGTACTCCACGGGC
ACGGGGCTGGAGTACATGGGCATCATGATCATGGCGTGCACGCTGCCGGTGGTGCTCGTC
CATTTCCCGCAGTGGGGCTCCATGTTCCTCCCGCCCAACGCCGGCGCCGAGGAGGAGCAC
TACTACGGCTCCGAGTGGAGCGAACAGGAGAAGAGCAAGGGCCTCCACGGTGCAAGTCTC
AAGTTCGCCGAGAACTCCCGCTCCGAGCGTGGCCGCCGCAACGTCATCAACGCCGCCGCC
GCCGCCGCCACGCCGCCCAACAACTCGCCGGAGCACGCCTAA

Peptide Sequence

PEP ID

Os02t0112600-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:667264:669053:-1 gene:Os02g0112600 transcript:Os02t0112600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIGH AFFINITY NITRATE TRANSPORTER description:High-affinity nitrate transporter, Nitrate uptake, Nitrate transport (Os02t0112600-01)
Sequence

MDSSTVGAPGSSLHGVTGREPAFAFSTEVGGEDAAAASKFDLPVDSEHKAKTIRLLSFAN
PHMRTFHLSWISFFSCFVSTFAAAPLVPIIRDNLNLTKADIGNAGVASVSGSIFSRLAMG
AICDMLGPRYGCAFLIMLAAPTVFCMSLIDSAAGYIAVRFLIGFSLATFVSCQYWMSTMF
NSKIIGLVNGLAAGWGNMGGGATQLIMPLVYDVIRKCGATPFTAWRLAYFVPGTLHVVMG
VLVLTLGQDLPDGNLRSLQKKGDVNRDSFSRVLWYAVTNYRTWIFVLLYGYSMGVELTTD
NVIAEYFYDRFDLDLRVAGIIAASFGMANIVARPTGGLLSDLGARYFGMRARLWNIWILQ
TAGGAFCLLLGRASTLPTSVVCMVLFSFCAQAACGAIFGVIPFVSRRSLGIISGMTGAGG
NFGAGLTQLLFFTSSRYSTGTGLEYMGIMIMACTLPVVLVHFPQWGSMFLPPNAGAEEEH
YYGSEWSEQEKSKGLHGASLKFAENSRSERGRRNVINAAAAAATPPNNSPEHA

Transcript Sequence

Transcript ID

Os02t0112600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:667264:669053:-1 gene:Os02g0112600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIGH AFFINITY NITRATE TRANSPORTER description:High-affinity nitrate transporter, Nitrate uptake, Nitrate transport (Os02t0112600-01)
Sequence

AAGCAACAGCAGCAGAAGTGCACTTTTGCATTCTATTTCCAATCAATCCAAGAGGCTAGA
GCTAGCGGCCAAGATCATCGTCACCGGCGGCATGGACTCGTCGACGGTGGGCGCTCCGGG
GAGCTCGCTGCACGGCGTGACGGGGCGCGAGCCGGCGTTCGCGTTCTCGACGGAGGTGGG
CGGCGAGGACGCGGCGGCGGCGAGCAAGTTCGACTTGCCGGTGGACTCGGAGCACAAGGC
GAAGACGATCAGGTTGCTGTCGTTCGCGAACCCGCATATGAGGACGTTCCACCTATCATG
GATCTCCTTCTTCTCCTGCTTCGTCTCCACCTTCGCCGCCGCCCCTCTCGTCCCCATCAT
CCGCGACAACCTCAACCTCACCAAGGCCGACATCGGCAACGCCGGCGTCGCCTCCGTCTC
CGGCTCCATCTTCTCCAGGCTCGCCATGGGCGCCATCTGCGACATGCTCGGCCCGCGCTA
CGGCTGCGCCTTCCTCATCATGCTCGCCGCGCCCACCGTCTTCTGCATGTCGCTCATCGA
CTCCGCCGCGGGGTACATCGCCGTGCGCTTCCTCATCGGCTTCTCCCTCGCCACCTTCGT
GTCATGCCAGTACTGGATGAGCACCATGTTCAACAGCAAGATCATCGGCCTCGTCAACGG
CCTCGCCGCCGGGTGGGGAAACATGGGCGGCGGCGCGACGCAGCTCATCATGCCGCTCGT
CTACGACGTGATCCGCAAGTGCGGCGCGACGCCGTTCACGGCGTGGAGGCTGGCCTACTT
CGTGCCGGGGACGCTGCACGTGGTGATGGGCGTGCTGGTGCTGACGCTGGGGCAGGACCT
CCCCGACGGCAACCTGCGCAGCCTGCAGAAGAAGGGTGACGTCAACAGGGACAGCTTCTC
CAGGGTGCTCTGGTACGCCGTCACCAACTACCGCACCTGGATCTTCGTCCTCCTCTACGG
CTACTCCATGGGCGTCGAGCTCACCACCGACAACGTCATCGCCGAGTACTTCTACGATCG
CTTCGACCTCGACCTCCGCGTCGCCGGCATCATCGCCGCATCCTTCGGCATGGCCAACAT
CGTCGCGCGCCCCACCGGCGGCCTCCTCTCGGACCTCGGCGCGCGCTACTTCGGCATGCG
CGCCCGCCTCTGGAACATTTGGATCCTCCAGACCGCCGGCGGCGCGTTCTGCCTCCTGCT
CGGCCGCGCATCCACCCTCCCCACCTCCGTCGTCTGCATGGTCCTCTTCTCCTTCTGCGC
GCAGGCCGCCTGCGGCGCCATCTTCGGCGTCATCCCCTTCGTCTCCCGCCGCTCGCTCGG
CATCATCTCCGGCATGACCGGCGCCGGCGGCAACTTCGGCGCCGGGCTCACGCAGCTGCT
CTTCTTCACGTCGTCGAGGTACTCCACGGGCACGGGGCTGGAGTACATGGGCATCATGAT
CATGGCGTGCACGCTGCCGGTGGTGCTCGTCCATTTCCCGCAGTGGGGCTCCATGTTCCT
CCCGCCCAACGCCGGCGCCGAGGAGGAGCACTACTACGGCTCCGAGTGGAGCGAACAGGA
GAAGAGCAAGGGCCTCCACGGTGCAAGTCTCAAGTTCGCCGAGAACTCCCGCTCCGAGCG
TGGCCGCCGCAACGTCATCAACGCCGCCGCCGCCGCCGCCACGCCGCCCAACAACTCGCC
GGAGCACGCCTAATTAAGAGGCCAAGTTAATTAATTATGCATGCATGTATAAACTGTTGA
ACGTTTTGTTACCGTTTTCTTTATACTATCTAGAGTATGTCGTCATGGAG