Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0109100-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:496768:500351:-1 gene:Os02g0109100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to diphosphomevalonate decarboxylase. (Os02t0109100-01)
Sequence

ATGGCGGCGGCGGAGGAGGGGCAGTGGGTGCTCATGGCCACCGGCCGATCTCCCACCAAC
ATCGCCGTCATCAAGTACTGGGGGAAGAGGGACGAGGCGCTCATCCTCCCCGTCAACGAC
AGCATCAGCGTCACCCTCGACCCCGACCACCTCTCCGCCACCACCACCGTCGCCGTCAGC
CCTTCCTTCCCCTCCGACCGCATGTGGCTCAACGGCAAGGAGATCTCCTTGTCAGGAGGG
AGGTTTCAGAGCTGCCTGAGGGAGATCCGGAAGCGTGCTCAAGATGTCGAGGATGAGAAG
AAGGGGATCAGGATCAAGAAAGAGGACTGGGGGAAGCTACATGTACACATAGCATCGTTC
AACAACTTCCCCACTGCTGCTGGTTTGGCCTCTTCGGCTGCTGGCTTGGCTTGTTTTGTT
TTCACCCTTGGAAAGCTAATGAATGTGAAAGAAGATCATGGTGAACTTTCTTCCATAGCA
AGGCAAGGGTCTGGAAGTGCATGCCGCAGTATATATGGGGGATTCGTGAAATGGTGTATG
GGAAAAAATAATGATGGAAGCGACAGCATAGCTGTACAACTTGCTGATGAGGCACACTGG
AATGATCTTGTTATTATCATAGCGGTGGTCAGTTCAAAGCAGAAGGAAACAAGTAGCACT
AGTGGGATGCGAGACAGTGTTGAAACAAGTCCCCTTTTGCAATATAGGGCCCAGACTGTA
GTTCCAGAACGGGTGTTGAAAATGGAAGAGGCTATCAAGTCTCGTAATTTTGAGTCCTTT
GCCAGGTTAACTTGTGCAGATAGCAACCAATTTCATGCTGTATGTTTGGACACGAGCCCT
CCCATCTTCTATATGAACGATACATCACACAGGATAATTAGCCTTGTGGAGAAGTGGAAC
CAGTCAGAAGGAACCCCACAGGTTGCTTACACCTTCGATGCTGGGCCCAATGCTGTCCTA
ATCGCACCAAACCGCAAAAATGCAACCATTCTCCTTCAGAAGCTCTTGTATTATTTCCCT
CCTCAAGATAATGATCTCAGCAGCTATATGGTTGGCGACAAGTCGATTCTAAGCGATGCT
GGACTGAAATCGATAGAAGATGTGGAGGCCCTCCCAGCTCCTGCCGAGACGAAGATGCCG
AGCCAAAAATTCAAGGGAGATGTGAGCTACTTCATCTGTAGCAGGCTTGGAGCTGGCCCA
AAAGTTGTCACTGACGAAAGCCTAGCATTGATCGATTCGGTCACGGGGCTCCCCAAGGGA
GTGTAG

Peptide Sequence

PEP ID

Os02t0109100-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:496768:500351:-1 gene:Os02g0109100 transcript:Os02t0109100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to diphosphomevalonate decarboxylase. (Os02t0109100-01)
Sequence

MAAAEEGQWVLMATGRSPTNIAVIKYWGKRDEALILPVNDSISVTLDPDHLSATTTVAVS
PSFPSDRMWLNGKEISLSGGRFQSCLREIRKRAQDVEDEKKGIRIKKEDWGKLHVHIASF
NNFPTAAGLASSAAGLACFVFTLGKLMNVKEDHGELSSIARQGSGSACRSIYGGFVKWCM
GKNNDGSDSIAVQLADEAHWNDLVIIIAVVSSKQKETSSTSGMRDSVETSPLLQYRAQTV
VPERVLKMEEAIKSRNFESFARLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISLVEKWN
QSEGTPQVAYTFDAGPNAVLIAPNRKNATILLQKLLYYFPPQDNDLSSYMVGDKSILSDA
GLKSIEDVEALPAPAETKMPSQKFKGDVSYFICSRLGAGPKVVTDESLALIDSVTGLPKG
V

Transcript Sequence

Transcript ID

Os02t0109100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:496768:500351:-1 gene:Os02g0109100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to diphosphomevalonate decarboxylase. (Os02t0109100-01)
Sequence

AAGATTCGGTCTCACTCTCGTCTTCCTCGGTGTCTCCGCCCCGCCGTCTCCGATCTCCCG
CCCTCCCGCCTCCGCCGCCGCCGGCGACTGCTCCCGCTCCCCGTCGTTGCTTCCGTTCCG
ATCGGTCTCCTTCCATGGCGGCGGCGGAGGAGGGGCAGTGGGTGCTCATGGCCACCGGCC
GATCTCCCACCAACATCGCCGTCATCAAGTACTGGGGGAAGAGGGACGAGGCGCTCATCC
TCCCCGTCAACGACAGCATCAGCGTCACCCTCGACCCCGACCACCTCTCCGCCACCACCA
CCGTCGCCGTCAGCCCTTCCTTCCCCTCCGACCGCATGTGGCTCAACGGCAAGGAGATCT
CCTTGTCAGGAGGGAGGTTTCAGAGCTGCCTGAGGGAGATCCGGAAGCGTGCTCAAGATG
TCGAGGATGAGAAGAAGGGGATCAGGATCAAGAAAGAGGACTGGGGGAAGCTACATGTAC
ACATAGCATCGTTCAACAACTTCCCCACTGCTGCTGGTTTGGCCTCTTCGGCTGCTGGCT
TGGCTTGTTTTGTTTTCACCCTTGGAAAGCTAATGAATGTGAAAGAAGATCATGGTGAAC
TTTCTTCCATAGCAAGGCAAGGGTCTGGAAGTGCATGCCGCAGTATATATGGGGGATTCG
TGAAATGGTGTATGGGAAAAAATAATGATGGAAGCGACAGCATAGCTGTACAACTTGCTG
ATGAGGCACACTGGAATGATCTTGTTATTATCATAGCGGTGGTCAGTTCAAAGCAGAAGG
AAACAAGTAGCACTAGTGGGATGCGAGACAGTGTTGAAACAAGTCCCCTTTTGCAATATA
GGGCCCAGACTGTAGTTCCAGAACGGGTGTTGAAAATGGAAGAGGCTATCAAGTCTCGTA
ATTTTGAGTCCTTTGCCAGGTTAACTTGTGCAGATAGCAACCAATTTCATGCTGTATGTT
TGGACACGAGCCCTCCCATCTTCTATATGAACGATACATCACACAGGATAATTAGCCTTG
TGGAGAAGTGGAACCAGTCAGAAGGAACCCCACAGGTTGCTTACACCTTCGATGCTGGGC
CCAATGCTGTCCTAATCGCACCAAACCGCAAAAATGCAACCATTCTCCTTCAGAAGCTCT
TGTATTATTTCCCTCCTCAAGATAATGATCTCAGCAGCTATATGGTTGGCGACAAGTCGA
TTCTAAGCGATGCTGGACTGAAATCGATAGAAGATGTGGAGGCCCTCCCAGCTCCTGCCG
AGACGAAGATGCCGAGCCAAAAATTCAAGGGAGATGTGAGCTACTTCATCTGTAGCAGGC
TTGGAGCTGGCCCAAAAGTTGTCACTGACGAAAGCCTAGCATTGATCGATTCGGTCACGG
GGCTCCCCAAGGGAGTGTAGCTGAAACTATGTCATTCGGAGAGTTTGTACTGAGAGCGCA
AAGCGAATTCAACTTTTGTAGGGTCATAAACTCGGCTTTGATGATGTAATATTTTTCTCC
CGTTGACACTGGCTGTTATTGCTGCTCCAAGGACAATACTGGTAATAAAAAAATGATGAA
ATAAATTG