Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0106800-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:397365:403411:1 gene:Os02g0106800 gene_biotype:protein_coding transcript_biotype:protein_coding description:TMPIT-like family protein. (Os02t0106800-01)
Sequence

ATGGCGACCGACGGCGACGCCCTCGAGTCCCAGGCGGCGGCGGCGGCCGAGGCGGCGCGG
GAGCTGCGCGAGGCCGCCGCGTCCCTCGTCGCCCGCCGCTCCGCCGACGAGGACGCGCTC
CGCCGCCGCGCCACGGCGCTCGACGCCGACCTCCGCCGCCTCCAGGCCTCCCTCTCCACC
CTCGCCCCCACCACGCTCGACAAGGTTGAGGAGGAACTGGAGCGTGCCAGGGTAACAATC
TCAGATAGTGACGTGGCTGCATTTCTCCCAAGCAAGCGGAATGGGAAGTTCCTCAAGACC
TTTGTTGGCCCTGTAAATGTGCGGGTGGCGAGAAAAGAAGATAAGCTCAGAGTGAAGGAC
GAGTACAACAACTACAGGGATAGGGCTGCCTATATGTTTCTATTGTTCCCATCCATTCTC
CTCCTACTTAGATGGTGGATATGGGATGGATGCCTTCCAGCCTTGGCAGTTCAGATGTAC
CAGGCTTGGCTACTATTCCTTTACACAAGTTTTGCTCTGCGGGAGAATGTGTTGATTGTA
AATGGAAGTGATATTCGTCCTTGGTGGATATACCACCACTATTTAGCAATGCTAATGGCT
CTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGG
GTACAACTTTTCCTGCGGTGGGCAATCATGCAAGGAATTGCAATGCATCTACAGAATAGG
TACCAGCGTCAAAGATTGCGCACCCGGATAGCTCTAGGAAAGGCTAAAAGAATGGATGTT
GTTGCTGGAGAAACAGCTGGTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTC
ACATTACAGGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGG
CTTGCATCGGAATGGCAGGTTGTAGTTTGTGGGATCTTGCTGGTGGTAATGGCAGTCGGC
AACTTTGTCAACACGATGGAGACTTTGATGTTAAAATTGAGGTTCAAAGCAAAAATGAAA
AGAGCAAAGAGCAGGCAGGATCTCAGTCGCCAACACCAAAATTGA

Peptide Sequence

PEP ID

Os02t0106800-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:397365:403411:1 gene:Os02g0106800 transcript:Os02t0106800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:TMPIT-like family protein. (Os02t0106800-01)
Sequence

MATDGDALESQAAAAAEAARELREAAASLVARRSADEDALRRRATALDADLRRLQASLST
LAPTTLDKVEEELERARVTISDSDVAAFLPSKRNGKFLKTFVGPVNVRVARKEDKLRVKD
EYNNYRDRAAYMFLLFPSILLLLRWWIWDGCLPALAVQMYQAWLLFLYTSFALRENVLIV
NGSDIRPWWIYHHYLAMLMALVSLTWEIKGQPDCSSKQRGVQLFLRWAIMQGIAMHLQNR
YQRQRLRTRIALGKAKRMDVVAGETAGVEGQLLLLYPVLFTLQVFEGYVGVLLLKTALHG
LASEWQVVVCGILLVVMAVGNFVNTMETLMLKLRFKAKMKRAKSRQDLSRQHQN

Transcript Sequence

Transcript ID

Os02t0106800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:397365:403411:1 gene:Os02g0106800 gene_biotype:protein_coding transcript_biotype:protein_coding description:TMPIT-like family protein. (Os02t0106800-01)
Sequence

ACCACCGCTCGTCTCCACCGCGAGCGAAACCCAAAAAGGCAATGGCGACCGACGGCGACG
CCCTCGAGTCCCAGGCGGCGGCGGCGGCCGAGGCGGCGCGGGAGCTGCGCGAGGCCGCCG
CGTCCCTCGTCGCCCGCCGCTCCGCCGACGAGGACGCGCTCCGCCGCCGCGCCACGGCGC
TCGACGCCGACCTCCGCCGCCTCCAGGCCTCCCTCTCCACCCTCGCCCCCACCACGCTCG
ACAAGGTTGAGGAGGAACTGGAGCGTGCCAGGGTAACAATCTCAGATAGTGACGTGGCTG
CATTTCTCCCAAGCAAGCGGAATGGGAAGTTCCTCAAGACCTTTGTTGGCCCTGTAAATG
TGCGGGTGGCGAGAAAAGAAGATAAGCTCAGAGTGAAGGACGAGTACAACAACTACAGGG
ATAGGGCTGCCTATATGTTTCTATTGTTCCCATCCATTCTCCTCCTACTTAGATGGTGGA
TATGGGATGGATGCCTTCCAGCCTTGGCAGTTCAGATGTACCAGGCTTGGCTACTATTCC
TTTACACAAGTTTTGCTCTGCGGGAGAATGTGTTGATTGTAAATGGAAGTGATATTCGTC
CTTGGTGGATATACCACCACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGG
AGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGAGGGGGGTACAACTTTTCCTGCGGT
GGGCAATCATGCAAGGAATTGCAATGCATCTACAGAATAGGTACCAGCGTCAAAGATTGC
GCACCCGGATAGCTCTAGGAAAGGCTAAAAGAATGGATGTTGTTGCTGGAGAAACAGCTG
GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGGTTTTCGAAG
GATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGCTTGCATCGGAATGGCAGG
TTGTAGTTTGTGGGATCTTGCTGGTGGTAATGGCAGTCGGCAACTTTGTCAACACGATGG
AGACTTTGATGTTAAAATTGAGGTTCAAAGCAAAAATGAAAAGAGCAAAGAGCAGGCAGG
ATCTCAGTCGCCAACACCAAAATTGACAAAGTGACCCATAATGGTGACTCCATGCTTGGA
AACAGCGAATGCTGACACACCATCTCTCTTGTAAATCCCTTAATCCATAAACTGTTTTGG
CTGCCCATGATTTTGTGTTTTGGTAATTGTTTCACATTGAAGTTCATATTCTACGGTCAA
TGCACGATTAAAAACACTGTTAACTTTACCACAGATGGGAACGCTAAATTTATGTGATTT
GTATGTGCT