Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0104100-00
CDS Infomation

cds chromosome:IRGSP-1.0:2:199223:204482:1 gene:Os02g0104100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to MADS-box transcription factor TaAGL18. (Os02t0104100-00)
Sequence

ATGGCGGCGGCGGCTGCAGGCATGGGCGGCGGAGGAGGGGTGCAGCATCAGGAGACGACG
ACGACAGTGGTGCAGGTAGCGGCGGAGGCGAGTCGGAAGAAGGTGGAGGTGAGATCTGCA
GGGCGGCGCGGGCGGCGGGAGATGCGGCGGATCGAGGACGCGACGAGCAGGCAGGTGACG
TTCTCGAAGCGCCGGAGTGGGCTGCTGAAGAAGGCGTTCGAGCTGTCGGTGCTCTGCGAC
GCCGAGGTTGCTCTCATCGTCTTCTCCCCTCGCGGCCGCCTCTACCAGTTCGCTTCTGCC
TCCTCCGACTTGCAGAGGACAATCGATCGCTACCTGAACCACACAAAAAACTCATCTGCA
CATGAAGAAGGAGAGGAATCATGCGTCCAGAAGTGGAGATCGGAGGCTACAACCCTGGGA
AAGAAGATAGAAGCAATTGAGGGCTACAAGAGTAAGCTGTTGGGGGAAGGCCTGGGGTCG
TGTTCAGTGCAGGAGCTACAAGAGCTTGAAGTGCAGCTGGAGAAGAGCTTATGTAGCATC
AGGCAAAAGAAGCAAAAGATGCTGATGGATCAGATTTTGGAGCTCAGGGAGAAGGAGATG
AACCTCTTGAAGGAGAATATGGTACTCCGTGATCAGGTGTGCGTATATATATACATGGCT
ACATGCTTTGATGTGATTGAAAAACTCCAAATTGAATGCGAAGATATATATGTACACACA
GATGGAGTCACGCACGCGATGAATTATATATGTAATTATATATGCAGTGTAAGGCTCTGT
CATCGCCATGGTCGACGTCTGTGGGAGAGCTGA

Peptide Sequence

PEP ID

Os02t0104100-00
PEP Infomation

pep chromosome:IRGSP-1.0:2:199223:204482:1 gene:Os02g0104100 transcript:Os02t0104100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to MADS-box transcription factor TaAGL18. (Os02t0104100-00)
Sequence

MAAAAAGMGGGGGVQHQETTTTVVQVAAEASRKKVEVRSAGRRGRREMRRIEDATSRQVT
FSKRRSGLLKKAFELSVLCDAEVALIVFSPRGRLYQFASASSDLQRTIDRYLNHTKNSSA
HEEGEESCVQKWRSEATTLGKKIEAIEGYKSKLLGEGLGSCSVQELQELEVQLEKSLCSI
RQKKQKMLMDQILELREKEMNLLKENMVLRDQVCVYIYMATCFDVIEKLQIECEDIYVHT
DGVTHAMNYICNYICSVRLCHRHGRRLWES

Transcript Sequence

Transcript ID

Os02t0104100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:199223:204482:1 gene:Os02g0104100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to MADS-box transcription factor TaAGL18. (Os02t0104100-00)
Sequence

CATGGCGGCGGCGGCTGCAGGCATGGGCGGCGGAGGAGGGGTGCAGCATCAGGAGACGAC
GACGACAGTGGTGCAGGTAGCGGCGGAGGCGAGTCGGAAGAAGGTGGAGGTGAGATCTGC
AGGGCGGCGCGGGCGGCGGGAGATGCGGCGGATCGAGGACGCGACGAGCAGGCAGGTGAC
GTTCTCGAAGCGCCGGAGTGGGCTGCTGAAGAAGGCGTTCGAGCTGTCGGTGCTCTGCGA
CGCCGAGGTTGCTCTCATCGTCTTCTCCCCTCGCGGCCGCCTCTACCAGTTCGCTTCTGC
CTCCTCCGACTTGCAGAGGACAATCGATCGCTACCTGAACCACACAAAAAACTCATCTGC
ACATGAAGAAGGAGAGGAATCATGCGTCCAGAAGTGGAGATCGGAGGCTACAACCCTGGG
AAAGAAGATAGAAGCAATTGAGGGCTACAAGAGTAAGCTGTTGGGGGAAGGCCTGGGGTC
GTGTTCAGTGCAGGAGCTACAAGAGCTTGAAGTGCAGCTGGAGAAGAGCTTATGTAGCAT
CAGGCAAAAGAAGCAAAAGATGCTGATGGATCAGATTTTGGAGCTCAGGGAGAAGGAGAT
GAACCTCTTGAAGGAGAATATGGTACTCCGTGATCAGGTGTGCGTATATATATACATGGC
TACATGCTTTGATGTGATTGAAAAACTCCAAATTGAATGCGAAGATATATATGTACACAC
AGATGGAGTCACGCACGCGATGAATTATATATGTAATTATATATGCAGTGTAAGGCTCTG
TCATCGCCATGGTCGACGTCTGTGGGAGAGCTGA