Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0103300-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:168443:169528:-1 gene:Os02g0103300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os02t0103300-01)
Sequence

ATGTCGATTCGATTCGATCCGATGGAGAGCAGAAGCAGCAGCAGCAGCAGAAGCGTGGTG
ATGATGTGCTGCGTGCTGATGTTGATGATTGCGGCGGCGGCGCATGCGGGCGAGCAGGAG
GCGGAGGAGTGCGCTAGCCCGATGAGCATCGAGGAGGCGTGCCGGGGGGCATCGGAGACG
CACCACGCGGTGGCCTACGACCACTGCGTGGCGTCGCTGACGGCGGACCCGCGCAGCAGC
AGCAGCGAGGCCCGCAGCCTGCACGGGCTCGCCATGCTCGCCACCCGTATGGCCATCGAC
CACGCCACCAGCACCGTCTGCAAGATGGACGACCTCGCGGAGCTGGAGCCCGAGGATTCT
TCGTCGCCGTCGGACGCGCGCGCACGGTTCGAGCACTGCCTTGAGCAGTACGGCGGCGCC
GCCGACCTCCTCCGCGACGCCCTGGACAACCTCAAGGTCCGCATCTACGGGACGGCCATG
GAGCAGCTGTCCGCCGCGCTGGGCGCCGCCGAGAGCTGCGAGGACGCGTGGAAGGGCGAC
GAGGGCAACATCCCCATCGCCGCCCACGACAGGGAGTACGGCAGGATGGCCCACATCGCC
ATCGGCTTCACCCACGCCGCCGCCTAA

Peptide Sequence

PEP ID

Os02t0103300-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:168443:169528:-1 gene:Os02g0103300 transcript:Os02t0103300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os02t0103300-01)
Sequence

MSIRFDPMESRSSSSSRSVVMMCCVLMLMIAAAAHAGEQEAEECASPMSIEEACRGASET
HHAVAYDHCVASLTADPRSSSSEARSLHGLAMLATRMAIDHATSTVCKMDDLAELEPEDS
SSPSDARARFEHCLEQYGGAADLLRDALDNLKVRIYGTAMEQLSAALGAAESCEDAWKGD
EGNIPIAAHDREYGRMAHIAIGFTHAAA

Transcript Sequence

Transcript ID

Os02t0103300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:168443:169528:-1 gene:Os02g0103300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os02t0103300-01)
Sequence

TAGCCAGCTAATTACACGATCCATCCATTTGCATCATCGTCGTCGTCTTCTTCGATCGAT
CGGCTGATCCAGTAATTCCTCGATCGGTGGACGTACGCCACGCTACTATCATCATATCAA
TCCCCGATCGACAGGTTAACATCGATCGATCATCCAAGCCAGCCATCGATCCATCAGAAT
AAGCAGCTAGCTTGGAGACCGATCGATCGATCGATCATATGTCGATTCGATTCGATCCGA
TGGAGAGCAGAAGCAGCAGCAGCAGCAGAAGCGTGGTGATGATGTGCTGCGTGCTGATGT
TGATGATTGCGGCGGCGGCGCATGCGGGCGAGCAGGAGGCGGAGGAGTGCGCTAGCCCGA
TGAGCATCGAGGAGGCGTGCCGGGGGGCATCGGAGACGCACCACGCGGTGGCCTACGACC
ACTGCGTGGCGTCGCTGACGGCGGACCCGCGCAGCAGCAGCAGCGAGGCCCGCAGCCTGC
ACGGGCTCGCCATGCTCGCCACCCGTATGGCCATCGACCACGCCACCAGCACCGTCTGCA
AGATGGACGACCTCGCGGAGCTGGAGCCCGAGGATTCTTCGTCGCCGTCGGACGCGCGCG
CACGGTTCGAGCACTGCCTTGAGCAGTACGGCGGCGCCGCCGACCTCCTCCGCGACGCCC
TGGACAACCTCAAGGTCCGCATCTACGGGACGGCCATGGAGCAGCTGTCCGCCGCGCTGG
GCGCCGCCGAGAGCTGCGAGGACGCGTGGAAGGGCGACGAGGGCAACATCCCCATCGCCG
CCCACGACAGGGAGTACGGCAGGATGGCCCACATCGCCATCGGCTTCACCCACGCCGCCG
CCTAATCTTCCTCCATTTCTTCCTTACTTCCATCTATCGCCTGCCTGCCTCTGCCTAATT
TTATTTCTACTACTCCTTATTAATTTGCATTCTCATCGATCGATCATCCGCTGGAATTTC
TTCTTCTTTTACTTAAATTATTATTATTATTATTATTAATTGCTGATTGAATTGAATATG
TACTGTAGGATTTAATTGTTCATCAGATGAAAGACGAATGAATAATAACACGATTAATTT
ACTGTG