Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0102800-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:146494:152581:1 gene:Os02g0102800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pleckstrin homology-type domain containing protein. (Os02t0102800-01);Similar to START domain-containing protein. (Os02t0102800-02)
Sequence

ATGATGCTGAGCTCGTCGGCGTCGAGGCGGGAGGTCGGCGGCGGCGGCGCCGCCTCCAGC
ACCAAGAGCGGCGAGCTGTCCCTGTCCAAGGTGGCCAGCGTGGCCATACGGGAGTCGTCG
GGCTCGGGCTCGGGCGGGATTTCCAAGAGCAGCGAATTGCTGTCGAGGGCAGGAACCATG
GCGGCGGCGAGGGAGGCGGCGGCGGCGGCGGTACACCACGAAGGATGGATGGTGCGCTAC
GGCCGGAGGAAGATCGGCAGGTCCTTCTTCCACACCCGCTACTTCGTCCTCGACAGCAGG
CTCCTCGCCTACTACAAGAAGAAACCCAAAGACAACATGGTGCCACTAAAATCGCTGCTG
ATAGACGGGAATTGCAGGGTGGAGGATAGAGGACTCAAAACACATCATGGACAAATGGTC
TATGTCCTGTGCGTTTATAATAAGAAAGAAAAGGAGCATCAGATCACGATGGGCGCGTAT
GATATTGAGGATGCTCTGGCCTGGAAAAAGAATATAGAACTCATTATCGATCAGCAAGAA
AATATGACCTCCAAAAACCGCAAGGCCTTTGCTTCAATGGACTTTGATACGGAACTAGGA
GGGCAGTTTATATTCTCAGACCATGACAGCGCAGCTGAAGATGAAGAGGAACGACCTATG
TTGATTCGCAGGACAACTATAGGGAATGGTCCCCCTGAATCAATACATGACTGGACCAAA
GAGCATGATATCGGTCCACCCAATCAGATTGACCCCATTCAAGTTAGCTCCAAGAAGAAT
TGGCGCCTACTTAGATGCCAAAATGGACTACGCATCTTTGAAGAACTTCTGGAATTCGAT
TATCTTGCAAGAAGCTGTAGCAGAGCTATGCGAGCTGTTGGTGTTGTGGAAGCCACATGC
GAAGCCATTTTTGGGCTGGTGATGAGCATGGATGTAACAAGATATGAGTGGGACTGCAGC
TTTCGCTATGGTAGTTTAGTTGAAGAGGTTGACGGCCACACCGCTATACTGTATCATAAG
TTGCAGTTGCACTGGTGCCCAATGTTAGTATGGCCTCGAGACCTATGTTATGTTCGCTAT
TGGCGGCGTAATGACGATGGAAGTTACGTTGTGCTGTTTCGATCTACAGAGCATCCAAAC
TGTGGACGTCAAAAAGGATATGTGAGGGCTTTTATTGAAAGTGGAGGTTTCAAGATTTCT
CCTCTCAAGTGTCGCAACGGAAGACCCCGCACTCAAGTTCAACACCTAATGCAGATTGAT
CTCAGGGGATGGCTCCTCAACTACTCTCCTTCCTTTCAGTATCATTCTTTGCTGCAGATA
CAAAACTGTGTAGCCGGCCTACGAGAATACTTCTCCCAAACAGACGAAACACATATAACT
CCAAGGATTCCTGTGATGGAAAACATGGTTGACACATCTGCAGTACAGAAAGATGACAAG
AAGAGTACCGAAGAAGTAGACTCCAAGACTAAAACACCAGATCGAGGACAAGCGGACAGT
AAAAACATGGGAATCATTGATGAAGAAACAGACGAGGATGAGGACTATCAGGTTCCTGAA
GCTAACATAGAGGAAGATCCTAACAAAGATGCTAAGCGTGCAGACGAACCACCAGAAAAG
ATTGATCTATCATGCTTTTCGGGCATTCTTCGTTGCGATGCGGATGAGAAAAGCCGAAAC
TGTTGGACAGTACCTGACAGCAAGCTGTTTAAAGTCCGTAGCAAGAACTTCCCGCATGAT
AAATCAAAGATACCTGCAGCGAGTTACCTGATGGAGCTTGCGGCCATTGACTGGTTTAAG
GACAGCAAGCGTATGGATAACGTAGGCAGGCAGAAAGGCTGTGTAGCCCAGGTAGCTGCT
GAGAAAGGGATGCATACATTTGTTGCCAACATACAGATCCCTGGATCAACTCATTACAGC
TTGGTGATGTACTTCGTGACAAAGTCGCTGAAGAAGGGATCACTGCTGCAGCGATTCTTC
GATGGGGATGATGAGTTCCGCAATAGCAGGCTGAAGCTGATACCCTCTGTACCCAAGGGA
TCATGGATAGTGCGGCAGAGTGTAGGGAGCACGCCGTGCTTGCTGGGGAAGGCGGTGGAT
TGCAGCTACGTGCGTGGAGCCGGATACCTGGAGGTGGACGTCGACATTGGGTCGTCGGCG
GTGGCCAACGGGGTGCTGGGTTTGGTGTTTGGTGTGGTGACGACGCTGGTGGTGGACATG
GCGTTCCTAATACAGGCCAACACCTACGAGGAGCTCCCCGAGCAGGTCATCGGCGCCGCC
CGTCTCGCTCACGTCGAACCCGCCGCCGCTATCGTCCCCCAGGACCTTACTCCCCCTCCT
CCTGCCCTTGCCGACGACGACAACGCCGCTGCTTCTTCCTCCGAGGATGATCATTTGTCC
AAGAAAACCAACTAA

Peptide Sequence

PEP ID

Os02t0102800-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:146494:152581:1 gene:Os02g0102800 transcript:Os02t0102800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pleckstrin homology-type domain containing protein. (Os02t0102800-01);Similar to START domain-containing protein. (Os02t0102800-02)
Sequence

MMLSSSASRREVGGGGAASSTKSGELSLSKVASVAIRESSGSGSGGISKSSELLSRAGTM
AAAREAAAAAVHHEGWMVRYGRRKIGRSFFHTRYFVLDSRLLAYYKKKPKDNMVPLKSLL
IDGNCRVEDRGLKTHHGQMVYVLCVYNKKEKEHQITMGAYDIEDALAWKKNIELIIDQQE
NMTSKNRKAFASMDFDTELGGQFIFSDHDSAAEDEEERPMLIRRTTIGNGPPESIHDWTK
EHDIGPPNQIDPIQVSSKKNWRLLRCQNGLRIFEELLEFDYLARSCSRAMRAVGVVEATC
EAIFGLVMSMDVTRYEWDCSFRYGSLVEEVDGHTAILYHKLQLHWCPMLVWPRDLCYVRY
WRRNDDGSYVVLFRSTEHPNCGRQKGYVRAFIESGGFKISPLKCRNGRPRTQVQHLMQID
LRGWLLNYSPSFQYHSLLQIQNCVAGLREYFSQTDETHITPRIPVMENMVDTSAVQKDDK
KSTEEVDSKTKTPDRGQADSKNMGIIDEETDEDEDYQVPEANIEEDPNKDAKRADEPPEK
IDLSCFSGILRCDADEKSRNCWTVPDSKLFKVRSKNFPHDKSKIPAASYLMELAAIDWFK
DSKRMDNVGRQKGCVAQVAAEKGMHTFVANIQIPGSTHYSLVMYFVTKSLKKGSLLQRFF
DGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCSYVRGAGYLEVDVDIGSSA
VANGVLGLVFGVVTTLVVDMAFLIQANTYEELPEQVIGAARLAHVEPAAAIVPQDLTPPP
PALADDDNAAASSSEDDHLSKKTN

Transcript Sequence

Transcript ID

Os02t0102800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:146494:152581:1 gene:Os02g0102800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pleckstrin homology-type domain containing protein. (Os02t0102800-01);Similar to START domain-containing protein. (Os02t0102800-02)
Sequence

GTTCTCTCCTCCCTAGCTGCGGACGGACTTGGATCCATCCATCTCCCATTCATTCATTCA
TTCATTCATGTGGCCATCCATCCACCATCTTGCATGCTAGCTAGCTACCCTGCAGGCCCA
TAACGACATTATTCAATTCGAATTAATTCCATCATCATATAATAATATATATGATGCTGA
GCTCGTCGGCGTCGAGGCGGGAGGTCGGCGGCGGCGGCGCCGCCTCCAGCACCAAGAGCG
GCGAGCTGTCCCTGTCCAAGGTGGCCAGCGTGGCCATACGGGAGTCGTCGGGCTCGGGCT
CGGGCGGGATTTCCAAGAGCAGCGAATTGCTGTCGAGGGCAGGAACCATGGCGGCGGCGA
GGGAGGCGGCGGCGGCGGCGGTACACCACGAAGGATGGATGGTGCGCTACGGCCGGAGGA
AGATCGGCAGGTCCTTCTTCCACACCCGCTACTTCGTCCTCGACAGCAGGCTCCTCGCCT
ACTACAAGAAGAAACCCAAAGACAACATGGTGCCACTAAAATCGCTGCTGATAGACGGGA
ATTGCAGGGTGGAGGATAGAGGACTCAAAACACATCATGGACAAATGGTCTATGTCCTGT
GCGTTTATAATAAGAAAGAAAAGGAGCATCAGATCACGATGGGCGCGTATGATATTGAGG
ATGCTCTGGCCTGGAAAAAGAATATAGAACTCATTATCGATCAGCAAGAAAATATGACCT
CCAAAAACCGCAAGGCCTTTGCTTCAATGGACTTTGATACGGAACTAGGAGGGCAGTTTA
TATTCTCAGACCATGACAGCGCAGCTGAAGATGAAGAGGAACGACCTATGTTGATTCGCA
GGACAACTATAGGGAATGGTCCCCCTGAATCAATACATGACTGGACCAAAGAGCATGATA
TCGGTCCACCCAATCAGATTGACCCCATTCAAGTTAGCTCCAAGAAGAATTGGCGCCTAC
TTAGATGCCAAAATGGACTACGCATCTTTGAAGAACTTCTGGAATTCGATTATCTTGCAA
GAAGCTGTAGCAGAGCTATGCGAGCTGTTGGTGTTGTGGAAGCCACATGCGAAGCCATTT
TTGGGCTGGTGATGAGCATGGATGTAACAAGATATGAGTGGGACTGCAGCTTTCGCTATG
GTAGTTTAGTTGAAGAGGTTGACGGCCACACCGCTATACTGTATCATAAGTTGCAGTTGC
ACTGGTGCCCAATGTTAGTATGGCCTCGAGACCTATGTTATGTTCGCTATTGGCGGCGTA
ATGACGATGGAAGTTACGTTGTGCTGTTTCGATCTACAGAGCATCCAAACTGTGGACGTC
AAAAAGGATATGTGAGGGCTTTTATTGAAAGTGGAGGTTTCAAGATTTCTCCTCTCAAGT
GTCGCAACGGAAGACCCCGCACTCAAGTTCAACACCTAATGCAGATTGATCTCAGGGGAT
GGCTCCTCAACTACTCTCCTTCCTTTCAGTATCATTCTTTGCTGCAGATACAAAACTGTG
TAGCCGGCCTACGAGAATACTTCTCCCAAACAGACGAAACACATATAACTCCAAGGATTC
CTGTGATGGAAAACATGGTTGACACATCTGCAGTACAGAAAGATGACAAGAAGAGTACCG
AAGAAGTAGACTCCAAGACTAAAACACCAGATCGAGGACAAGCGGACAGTAAAAACATGG
GAATCATTGATGAAGAAACAGACGAGGATGAGGACTATCAGGTTCCTGAAGCTAACATAG
AGGAAGATCCTAACAAAGATGCTAAGCGTGCAGACGAACCACCAGAAAAGATTGATCTAT
CATGCTTTTCGGGCATTCTTCGTTGCGATGCGGATGAGAAAAGCCGAAACTGTTGGACAG
TACCTGACAGCAAGCTGTTTAAAGTCCGTAGCAAGAACTTCCCGCATGATAAATCAAAGA
TACCTGCAGCGAGTTACCTGATGGAGCTTGCGGCCATTGACTGGTTTAAGGACAGCAAGC
GTATGGATAACGTAGGCAGGCAGAAAGGCTGTGTAGCCCAGGTAGCTGCTGAGAAAGGGA
TGCATACATTTGTTGCCAACATACAGATCCCTGGATCAACTCATTACAGCTTGGTGATGT
ACTTCGTGACAAAGTCGCTGAAGAAGGGATCACTGCTGCAGCGATTCTTCGATGGGGATG
ATGAGTTCCGCAATAGCAGGCTGAAGCTGATACCCTCTGTACCCAAGGGATCATGGATAG
TGCGGCAGAGTGTAGGGAGCACGCCGTGCTTGCTGGGGAAGGCGGTGGATTGCAGCTACG
TGCGTGGAGCCGGATACCTGGAGGTGGACGTCGACATTGGGTCGTCGGCGGTGGCCAACG
GGGTGCTGGGTTTGGTGTTTGGTGTGGTGACGACGCTGGTGGTGGACATGGCGTTCCTAA
TACAGGCCAACACCTACGAGGAGCTCCCCGAGCAGGTCATCGGCGCCGCCCGTCTCGCTC
ACGTCGAACCCGCCGCCGCTATCGTCCCCCAGGACCTTACTCCCCCTCCTCCTGCCCTTG
CCGACGACGACAACGCCGCTGCTTCTTCCTCCGAGGATGATCATTTGTCCAAGAAAACCA
ACTAAGCTAGCACCTCTCTCAACGCACGCACTGCAACTTATCAATCATTTATCTTCTTGT
AATTTCTAATTATTTCCGAGGCTCATAGCAAGCTTTGTTTTTTTTCTTTTCATCTTTTTT
TTTATCTCGTTAAGTTGTTTGCAAAGTACAGCTGGTTTTCTTCTACGTAGGAACAAAGAT
AAATCTAGCTAGTGACAGTATTTCGTTGGAACCTAATATTATAGACTGAGATATTTTGTT
TAGGCTTAGATTTGCTGTCTTTGGCTTTAAGTCAGACTTTTAATTAACTTACACTCCCTC
CATTTTTTTAATTGACGACGCCATTGACTTTTGAACACATGTTTGACCATTCGCTTTATT
TAAAAATTTTAT