Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0101100-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:59323:64707:1 gene:Os02g0101100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Initiation factor 3 family protein. (Os02t0101100-01)
Sequence	ATGATGATGGCTCTCCGCCGCGCCGTCGGAATTGGCTCCGCCGCCGCCCTCCGCTCTGCC GCCTACCTCCGCCGCGCCTCCCCCTCGCCGGCGCGGCCCCATCCCCTCGTCCCTCCACCG CCTGCCGCCCGAACCTTCGCCGCCCCGCCCCAGGTGATGAAGAGGAGCACCAAGGACGAC GACGACGATGGCCCTCGGATCAACAACGACATCACCTCTCCCTTTGTTCGACTCGTCACT GACCAAGGCCATAGTGTTGTCCCCAGGCACGAAGCTCTTCAGCTTGCGGCCAGGATGGAC TTGGACTTGGTCGAGGTCCACAGAAAATCAGACCCTCCTGTCTGTAAAATCATGGATTTT CACAAAGAGAAGTATAAGAAAGACGTTAAGGAGAAAGAACGCCTAAAAACTAAGTCTGCT ATTGTCTTACGCGGTGGGGAGAACAAAGAAGTGCGGTTTAAGGGTAAAACAGAACTAAAA GACTTGAAGGTGAAAGCAGATGGAATCACCAGATTAATGGAGCGAGGTTACAGGGTGAAG TGCATGGCGATGCCCTCAGGTAATGAAGAAGAAGATTTAGGAGGGCCACTATCTCGGTTG TTAGGACTTATACAAGATGTCTGCATAGTGGAAAGTGGCCCACATTTGGACTCGAAGCAT GCATACGTTATTGTTAGGCATGTGAAGTTTGCAACAAAGAAAGCTGGAAAGAAAGCTAGC AAGGCCATAGAAGATGTAGGCAAAGGTGCCCGCAAGAATGCCTCTGAATTGTCAACTGTT ACTGCCGATAGTGGAGATGAGACAAATGATTGTGGAAATGGGGCCATCTCAGATCAAATG GACAACGCTCCTGCTTACGTCTCCAATGAATTTTCCATGCAGAAAGATGCACATGATAGA GGCTCTAGAAGGGAGTTGAGTTGGTCGAAATCGAACCCGGGCAACTACGGTGAAAACATG CAAAATGTTGATGCTGGGGCACACAGAATTAGCTCTAGTCAGCGGGCAGCACAAACCTCA GAGGGTGGGTTTGGTTCCAATAATGTAAAATCTGGTATGGAAAAGCAAGAAAAGGCTAAT GAAGATGTGGTACCTGCAGAAACCAACAGATACGCCAGCCGAAGACAGCAGATAAGAGGA GATAACCAGGGTTTGAGCCAAGATAGATCCCCGCAAGGTCATAGAAGGAATGAAAATGAA GTTCGCTATCCGGTCAATGACTACCAAAGACCTCTGCAGCAGAACAACCGACAATCACCA AGGTTCAACGATGGTAGATTACCACAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATT CCGTTGAATAACAAACAAGGCCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGT AATGGTGCAGGCTATCCTACTCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAA CCTGCTACGTCTGAGTTGGGGAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTA CCTAAAAGCTATGGAATCTTTAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGA

Peptide Sequence

PEP ID	Os02t0101100-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:59323:64707:1 gene:Os02g0101100 transcript:Os02t0101100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Initiation factor 3 family protein. (Os02t0101100-01)
Sequence	MMMALRRAVGIGSAAALRSAAYLRRASPSPARPHPLVPPPPAARTFAAPPQVMKRSTKDD DDDGPRINNDITSPFVRLVTDQGHSVVPRHEALQLAARMDLDLVEVHRKSDPPVCKIMDF HKEKYKKDVKEKERLKTKSAIVLRGGENKEVRFKGKTELKDLKVKADGITRLMERGYRVK CMAMPSGNEEEDLGGPLSRLLGLIQDVCIVESGPHLDSKHAYVIVRHVKFATKKAGKKAS KAIEDVGKGARKNASELSTVTADSGDETNDCGNGAISDQMDNAPAYVSNEFSMQKDAHDR GSRRELSWSKSNPGNYGENMQNVDAGAHRISSSQRAAQTSEGGFGSNNVKSGMEKQEKAN EDVVPAETNRYASRRQQIRGDNQGLSQDRSPQGHRRNENEVRYPVNDYQRPLQQNNRQSP RFNDGRLPQEPRRNERGGHIPLNNKQGQFQQMNHPAESAGNGAGYPTPTAKSFGVFSTRK PATSELGKTNGASRTANSDVPKSYGIFSSPRRESGDKSS

Transcript Sequence

Transcript ID	Os02t0101100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:59323:64707:1 gene:Os02g0101100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Initiation factor 3 family protein. (Os02t0101100-01)
Sequence	ACTCCAGTATTGTTTTGTTGGGTCGGCGGCGGCGGGTGAGAGTGGAGAATGATGATGGCT CTCCGCCGCGCCGTCGGAATTGGCTCCGCCGCCGCCCTCCGCTCTGCCGCCTACCTCCGC CGCGCCTCCCCCTCGCCGGCGCGGCCCCATCCCCTCGTCCCTCCACCGCCTGCCGCCCGA ACCTTCGCCGCCCCGCCCCAGGTGATGAAGAGGAGCACCAAGGACGACGACGACGATGGC CCTCGGATCAACAACGACATCACCTCTCCCTTTGTTCGACTCGTCACTGACCAAGGCCAT AGTGTTGTCCCCAGGCACGAAGCTCTTCAGCTTGCGGCCAGGATGGACTTGGACTTGGTC GAGGTCCACAGAAAATCAGACCCTCCTGTCTGTAAAATCATGGATTTTCACAAAGAGAAG TATAAGAAAGACGTTAAGGAGAAAGAACGCCTAAAAACTAAGTCTGCTATTGTCTTACGC GGTGGGGAGAACAAAGAAGTGCGGTTTAAGGGTAAAACAGAACTAAAAGACTTGAAGGTG AAAGCAGATGGAATCACCAGATTAATGGAGCGAGGTTACAGGGTGAAGTGCATGGCGATG CCCTCAGGTAATGAAGAAGAAGATTTAGGAGGGCCACTATCTCGGTTGTTAGGACTTATA CAAGATGTCTGCATAGTGGAAAGTGGCCCACATTTGGACTCGAAGCATGCATACGTTATT GTTAGGCATGTGAAGTTTGCAACAAAGAAAGCTGGAAAGAAAGCTAGCAAGGCCATAGAA GATGTAGGCAAAGGTGCCCGCAAGAATGCCTCTGAATTGTCAACTGTTACTGCCGATAGT GGAGATGAGACAAATGATTGTGGAAATGGGGCCATCTCAGATCAAATGGACAACGCTCCT GCTTACGTCTCCAATGAATTTTCCATGCAGAAAGATGCACATGATAGAGGCTCTAGAAGG GAGTTGAGTTGGTCGAAATCGAACCCGGGCAACTACGGTGAAAACATGCAAAATGTTGAT GCTGGGGCACACAGAATTAGCTCTAGTCAGCGGGCAGCACAAACCTCAGAGGGTGGGTTT GGTTCCAATAATGTAAAATCTGGTATGGAAAAGCAAGAAAAGGCTAATGAAGATGTGGTA CCTGCAGAAACCAACAGATACGCCAGCCGAAGACAGCAGATAAGAGGAGATAACCAGGGT TTGAGCCAAGATAGATCCCCGCAAGGTCATAGAAGGAATGAAAATGAAGTTCGCTATCCG GTCAATGACTACCAAAGACCTCTGCAGCAGAACAACCGACAATCACCAAGGTTCAACGAT GGTAGATTACCACAAGAACCAAGAAGAAATGAAAGGGGAGGCCATATTCCGTTGAATAAC AAACAAGGCCAATTTCAGCAAATGAATCATCCTGCTGAATCAGCGGGTAATGGTGCAGGC TATCCTACTCCGACGGCCAAGAGTTTTGGAGTTTTCAGTACCAGAAAACCTGCTACGTCT GAGTTGGGGAAAACAAATGGTGCTAGTAGGACTGCTAATTCTGATGTACCTAAAAGCTAT GGAATCTTTAGTTCTCCTAGAAGGGAATCTGGTGATAAAAGCTCATGAATGAAACTATCA GCAGATAAGCCTATAAACAGCAGGTCTACATCAAAGTTTGTCGTATTTGGAATTGGCACA ATAAGCCTCGAAATGTAAGGATCAGCATGTGGGTCTCATGTTTCAGTTTTTGTTGATCAT TGACTATTATTCATTCAGCCTGAGCATATCTACGTGGCGGTGGCACGGTGAGAAAGCCAA CTGCAAGCTTGAGAGGTACTGTACTACTCCTATTTGTTAAGTAGCTTTTGGGTCCACTTG TATTGTTATCATTTGATTGGAAGAATCACACCTGTTTAGACTAGAATAGCCCTTTTACTT GTCAGGTTGATCGAATAGTGAAAAATAATGTCATGAGTGGTCGGATCCATTTGATTGTGA TAGCATTTTTTAC