Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0973000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:42954163:42956626:1 gene:Os01g0973000 gene_biotype:protein_coding transcript_biotype:protein_coding description:HAD-superfamily hydrolase, subfamily IA, variant 3 domain containing protein. (Os01t0973000-01)
Sequence

ATGGAGTGCGAGAGCAACTACAGCAAGGAGCAGAGGCTCAACGGCGACAGCCTCGTCTTC
GACCTTGATGACACGCTGTATCCGGTGACCTCCGGCATTGGAGCCGACGTCGTAAGGAAC
ATCCAAGCTTATATGATCGAAAAGCTTGGTGTGGAAGAGAGCATCAGTTTGGAGCTATGC
GTCCTCCTCTACAAGCAGTATGGAACTACCATGGCCGGTTTGAGGGCTGTTGGGTACCAG
TTTGATTATGACGACTTCCACAGCTATGTTCATGGAAGGTTGGCTTATGAGAAAATTAAG
CCTGATCCAGTACTTAGGAACATTCTCCTAAGCTTGCCAATCCGCAAAGTTGTCTTCACA
AATGGTGACAGAATTCATGCTTCAAGGGCCCTCAAGAGGCTAGGAATAGAAGATTGCTTT
GAAAGAGTTGTGTGCTTTGAGACACTGAACCCAACATCATCCTCTCTTTCGGCAGCTGGT
CAGGTTGAAATTTTTGATATAATGAAGCATCTGGCTCATCCAGAGCCTGGGGTTGAACTA
CCAAAGTCGCCAATCCTGTGCAAGCCAAATATAGATGCCATGCGGCAAGCTCTCAAGGTT
GCCTCCATCAATCCGAAGACATCGATATTGTTTGATGACAGCGCCAGGAACATCCAGGCT
GCGAAGCTAATAGGAATGTATACTGTCCTGGTTGGAACTTCTGAAAGAATAAAGGGTGCT
GACCATGCGTTGGAAAGCCTTCACAACATGAAGGAAGCATTGCCTGAGCTGTGGGATGAA
GCTGTGAAGGATGAGGATGTCAGGAAGTCAAGCAAAGTCGGAATTGAGACATCTGTGATC
GCTTAA

Peptide Sequence

PEP ID

Os01t0973000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:42954163:42956626:1 gene:Os01g0973000 transcript:Os01t0973000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:HAD-superfamily hydrolase, subfamily IA, variant 3 domain containing protein. (Os01t0973000-01)
Sequence

MECESNYSKEQRLNGDSLVFDLDDTLYPVTSGIGADVVRNIQAYMIEKLGVEESISLELC
VLLYKQYGTTMAGLRAVGYQFDYDDFHSYVHGRLAYEKIKPDPVLRNILLSLPIRKVVFT
NGDRIHASRALKRLGIEDCFERVVCFETLNPTSSSLSAAGQVEIFDIMKHLAHPEPGVEL
PKSPILCKPNIDAMRQALKVASINPKTSILFDDSARNIQAAKLIGMYTVLVGTSERIKGA
DHALESLHNMKEALPELWDEAVKDEDVRKSSKVGIETSVIA

Transcript Sequence

Transcript ID

Os01t0973000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:42954163:42956626:1 gene:Os01g0973000 gene_biotype:protein_coding transcript_biotype:protein_coding description:HAD-superfamily hydrolase, subfamily IA, variant 3 domain containing protein. (Os01t0973000-01)
Sequence

CCCTTTCCTTCTCATTCCTCGCGGGGAGGGGCGGCGCCGACGCCTCATCGACTAGTTCAC
TCCATCTCCATCTCCATCTCCATCTCCATCTACATATACGGCCGCTTCCAACTGCAATCT
CCTGCCTGCCCAGCGATTCTTCCCACGATTTCCTTTCCTGCTTTTCTCATCCCTTTTGTT
TCTTCACTCCGGCTCACCGCGCGAACCAATCTTCTGCCTTCACACAACCAATTCATCAAG
CAGATCGAGATGGAGTGCGAGAGCAACTACAGCAAGGAGCAGAGGCTCAACGGCGACAGC
CTCGTCTTCGACCTTGATGACACGCTGTATCCGGTGACCTCCGGCATTGGAGCCGACGTC
GTAAGGAACATCCAAGCTTATATGATCGAAAAGCTTGGTGTGGAAGAGAGCATCAGTTTG
GAGCTATGCGTCCTCCTCTACAAGCAGTATGGAACTACCATGGCCGGTTTGAGGGCTGTT
GGGTACCAGTTTGATTATGACGACTTCCACAGCTATGTTCATGGAAGGTTGGCTTATGAG
AAAATTAAGCCTGATCCAGTACTTAGGAACATTCTCCTAAGCTTGCCAATCCGCAAAGTT
GTCTTCACAAATGGTGACAGAATTCATGCTTCAAGGGCCCTCAAGAGGCTAGGAATAGAA
GATTGCTTTGAAAGAGTTGTGTGCTTTGAGACACTGAACCCAACATCATCCTCTCTTTCG
GCAGCTGGTCAGGTTGAAATTTTTGATATAATGAAGCATCTGGCTCATCCAGAGCCTGGG
GTTGAACTACCAAAGTCGCCAATCCTGTGCAAGCCAAATATAGATGCCATGCGGCAAGCT
CTCAAGGTTGCCTCCATCAATCCGAAGACATCGATATTGTTTGATGACAGCGCCAGGAAC
ATCCAGGCTGCGAAGCTAATAGGAATGTATACTGTCCTGGTTGGAACTTCTGAAAGAATA
AAGGGTGCTGACCATGCGTTGGAAAGCCTTCACAACATGAAGGAAGCATTGCCTGAGCTG
TGGGATGAAGCTGTGAAGGATGAGGATGTCAGGAAGTCAAGCAAAGTCGGAATTGAGACA
TCTGTGATCGCTTAAAACTCCCATGAATGTTTCTGATGGAGAACAGCATGAGATGAGTGG
ATCATTTTTCAGAGCTCATCTCTGCACTTTCTTATGTCTGAAAGTAGATGTGCTAATTTA
GGGGAGATTTTACTCTTCTTCATGTACTGTGTGAGTGTGTGACTGCCTGTAATAAATAAA
TAAATAAATGCCATCTATGAACTGACAATACAATTCCTGG