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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0971800-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:42874273:42875515:-1 gene:Os01g0971800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOCLOCK 1 description:Similar to Two-component response regulator ARR11 (Receiver-like protein 3). (Os01t0971800-00)
Sequence

ATGGGCGAGGAGGCGCCGGAGGAGTACGAGCTGGGCGGCGGGGAGGACGAGCGGGTGATG
GAGTGGGAGACGGGGCTGCCCGGCGCCGACGAGCTGACCCCGCTGTCGCAGCCGCTGGTG
CCGGCGGGGCTGGCGGCGGCGTTCCGCATCCCGCCGGAGCCCGGGCGCACGCTGCTCGAC
GTGCACCGCGCGTCGGCGGCGACGGTGTCCCGGTTGCGGCGCGCGTCGTCGTCGTCGTCG
AGCTCGTTCCCGGCGTTCGCGTCGAAGGGAGCGGGAACGGGAGCGGACGAGGCGGAGTCA
GGGGGAGGCGCGGATGGGGGGAACGGGAACACCAACAACAGCAGCAGCAAGAGGGCGCGG
CTGGTGTGGACGCCGCAGCTGCACAAGAGGTTCGTGGAGGTGGTGGCGCACCTGGGGATG
AAGAACGCGGTGCCCAAGACGATCATGCAGCTGATGAACGTGGAGGGCCTCACCCGGGAG
AACGTCGCCAGCCACCTCCAGAAGTATCGCCTCTACGTGAAGCGGATGCAGGGCCTCTCC
AACGAGGGCCCTTCCCCCTCCGACCACATCTTCGCCTCCACCCCCGTCCCCCACGCCTCC
CTCCACGACCAGGTTCCTTCTCCTTACCACCCCCACCCCCACCACCACTCCTACAACAAC
GCCGCCTATGCCGCCACCGTCTCCTCCTACCACCACTACCACCACGCCAACCACTGA

Peptide Sequence

PEP ID

Os01t0971800-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:42874273:42875515:-1 gene:Os01g0971800 transcript:Os01t0971800-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOCLOCK 1 description:Similar to Two-component response regulator ARR11 (Receiver-like protein 3). (Os01t0971800-00)
Sequence

MGEEAPEEYELGGGEDERVMEWETGLPGADELTPLSQPLVPAGLAAAFRIPPEPGRTLLD
VHRASAATVSRLRRASSSSSSSFPAFASKGAGTGADEAESGGGADGGNGNTNNSSSKRAR
LVWTPQLHKRFVEVVAHLGMKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYVKRMQGLS
NEGPSPSDHIFASTPVPHASLHDQVPSPYHPHPHHHSYNNAAYAATVSSYHHYHHANH

Transcript Sequence

Transcript ID

Os01t0971800-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:42874273:42875515:-1 gene:Os01g0971800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHYTOCLOCK 1 description:Similar to Two-component response regulator ARR11 (Receiver-like protein 3). (Os01t0971800-00)
Sequence

CCACCTCGACTCAACTCAACTCGCACAAATATCTTCTCTCTTCTCACCCACCGCCCGATT
CTTCGAGTCCCCGATTTGGTTCGGCCTGAAGAAGGGTCTGGGTCTCTCTAGAGAGTGAGT
AGCCATCGATTTGAGATTTGATTAGTAATTCGGAGGAGGAGGAACGAGTGGTTTTTTTGA
TTTGATTTGATTTGATTGAGAAGAAAATCCGAGTATTATGGGCGAGGAGGCGCCGGAGGA
GTACGAGCTGGGCGGCGGGGAGGACGAGCGGGTGATGGAGTGGGAGACGGGGCTGCCCGG
CGCCGACGAGCTGACCCCGCTGTCGCAGCCGCTGGTGCCGGCGGGGCTGGCGGCGGCGTT
CCGCATCCCGCCGGAGCCCGGGCGCACGCTGCTCGACGTGCACCGCGCGTCGGCGGCGAC
GGTGTCCCGGTTGCGGCGCGCGTCGTCGTCGTCGTCGAGCTCGTTCCCGGCGTTCGCGTC
GAAGGGAGCGGGAACGGGAGCGGACGAGGCGGAGTCAGGGGGAGGCGCGGATGGGGGGAA
CGGGAACACCAACAACAGCAGCAGCAAGAGGGCGCGGCTGGTGTGGACGCCGCAGCTGCA
CAAGAGGTTCGTGGAGGTGGTGGCGCACCTGGGGATGAAGAACGCGGTGCCCAAGACGAT
CATGCAGCTGATGAACGTGGAGGGCCTCACCCGGGAGAACGTCGCCAGCCACCTCCAGAA
GTATCGCCTCTACGTGAAGCGGATGCAGGGCCTCTCCAACGAGGGCCCTTCCCCCTCCGA
CCACATCTTCGCCTCCACCCCCGTCCCCCACGCCTCCCTCCACGACCAGGTTCCTTCTCC
TTACCACCCCCACCCCCACCACCACTCCTACAACAACGCCGCCTATGCCGCCACCGTCTC
CTCCTACCACCACTACCACCACGCCAACCACTGATCCATTCCTTCTCATCATCATTTCAT
TTCCACATCTATATACCACATACTACTCCATAACGAAGGTGTTTCATCAATAAGAGAAGA
GAAGAGAAGAGAATGCTCCCTCAACTGTAAACTCCTAATTCTAATTAAGGGCAAAGTGTA
TCCATCCATCCATCCACGCTGTTTGTTTGTAGCTGTTGTTAATTGAGCTGGATGCATGAC
ATGTATCTCTATGTACCTACCTGCGTGACAAAGGCATCATGCATATGTATGGTTCCCTTG
CAATTTGGGGAATCCAGAAATGATTCATACTTGTGATTCTTGC