Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0971400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:42855657:42857462:1 gene:Os01g0971400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cysteine proteinase. (Os01t0971400-01)
Sequence

ATGGCGGCTTCAATGAATTCGAAGCTTCCCCTGGCTCTTGTGCTCCTCCTGCTGTGCGGC
GGCGCATGCGTAGCGGTAGCCATGCCCAGTGAATTGTCCATAGTTGGCTACTCGGAGGAG
GATCTGGCGTCGCATGAGAGGCTGATGGAGCTGTTCGAGAAGTTCATGGCCAAGTACCGC
AAGGCCTACTCCAGCTTGGAGGAGAAGCTGAGGAGGTTCGAGGTGTTCAAGGACAACCTC
AACCACATCGACGAGGAGAACAAGAAGATCACCGGCTACTGGCTGGGCCTCAACGAGTTC
GCCGACCTCACCCACGACGAGTTCAAGGCTGCCTACCTCGGCCTCACCCTCACTCCGGCG
AGGAGGAACAGCAACGATCAGTTGTTCAGGTACGAGGAGGTGGAGGCGGCAAGTTTGCCG
AAGGAGGTGGACTGGAGGAAGAAGGGGGCGGTGACGGAGGTGAAGAACCAGGGGCAGTGC
GGCAGCTGCTGGGCGTTCTCGACGGTGGCGGCGGTGGAGGGGATCAACGCCATCGTGACC
GGCAACCTGACGCGCCTGTCGGAGCAGGAGCTCATCGACTGCGACACCGACGGCAACAAC
GGCTGCAGCGGCGGCCTCATGGACTACGCCTTCTCCTACATCGCCGCCAACGGCGGCCTC
CACACCGAGGAGTCCTACCCGTACCTGATGGAGGAAGGCACCTGCCGCCGCGGCAGCACG
GAGGGGGACGACGACGGCGAGGCGGCGGCGGCGGTGACCATCTCCGGGTACGAGGACGTG
CCGAGGAACAACGAGCAGGCCCTGCTCAAGGCCCTGGCCCACCAGCCCGTCAGCGTCGCC
ATCGAGGCCTCAGGCAGGAACTTCCAGTTCTACAGCGGGGGTGTGTTTGATGGTCCGTGC
GGCACGCGGCTGGATCATGGCGTGACGGCCGTTGGATACGGGACGGCCAGCAAGGGACAC
GATTACATCATCGTGAAGAACTCGTGGGGATCGCATTGGGGTGAGAAGGGGTACATCCGG
ATGAGGAGGGGCACCGGCAAGCACGACGGCCTCTGCGGCATCAACAAGATGGCCTCCTAC
CCAACCAAGAACGCTTAA

Peptide Sequence

PEP ID

Os01t0971400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:42855657:42857462:1 gene:Os01g0971400 transcript:Os01t0971400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cysteine proteinase. (Os01t0971400-01)
Sequence

MAASMNSKLPLALVLLLLCGGACVAVAMPSELSIVGYSEEDLASHERLMELFEKFMAKYR
KAYSSLEEKLRRFEVFKDNLNHIDEENKKITGYWLGLNEFADLTHDEFKAAYLGLTLTPA
RRNSNDQLFRYEEVEAASLPKEVDWRKKGAVTEVKNQGQCGSCWAFSTVAAVEGINAIVT
GNLTRLSEQELIDCDTDGNNGCSGGLMDYAFSYIAANGGLHTEESYPYLMEEGTCRRGST
EGDDDGEAAAAVTISGYEDVPRNNEQALLKALAHQPVSVAIEASGRNFQFYSGGVFDGPC
GTRLDHGVTAVGYGTASKGHDYIIVKNSWGSHWGEKGYIRMRRGTGKHDGLCGINKMASY
PTKNA

Transcript Sequence

Transcript ID

Os01t0971400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:42855657:42857462:1 gene:Os01g0971400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cysteine proteinase. (Os01t0971400-01)
Sequence

ATGCACAGCAGCAGCAGCTTGTATCATCCTACTAGTAGTAGCTTGCAACAATGGCGGCTT
CAATGAATTCGAAGCTTCCCCTGGCTCTTGTGCTCCTCCTGCTGTGCGGCGGCGCATGCG
TAGCGGTAGCCATGCCCAGTGAATTGTCCATAGTTGGCTACTCGGAGGAGGATCTGGCGT
CGCATGAGAGGCTGATGGAGCTGTTCGAGAAGTTCATGGCCAAGTACCGCAAGGCCTACT
CCAGCTTGGAGGAGAAGCTGAGGAGGTTCGAGGTGTTCAAGGACAACCTCAACCACATCG
ACGAGGAGAACAAGAAGATCACCGGCTACTGGCTGGGCCTCAACGAGTTCGCCGACCTCA
CCCACGACGAGTTCAAGGCTGCCTACCTCGGCCTCACCCTCACTCCGGCGAGGAGGAACA
GCAACGATCAGTTGTTCAGGTACGAGGAGGTGGAGGCGGCAAGTTTGCCGAAGGAGGTGG
ACTGGAGGAAGAAGGGGGCGGTGACGGAGGTGAAGAACCAGGGGCAGTGCGGCAGCTGCT
GGGCGTTCTCGACGGTGGCGGCGGTGGAGGGGATCAACGCCATCGTGACCGGCAACCTGA
CGCGCCTGTCGGAGCAGGAGCTCATCGACTGCGACACCGACGGCAACAACGGCTGCAGCG
GCGGCCTCATGGACTACGCCTTCTCCTACATCGCCGCCAACGGCGGCCTCCACACCGAGG
AGTCCTACCCGTACCTGATGGAGGAAGGCACCTGCCGCCGCGGCAGCACGGAGGGGGACG
ACGACGGCGAGGCGGCGGCGGCGGTGACCATCTCCGGGTACGAGGACGTGCCGAGGAACA
ACGAGCAGGCCCTGCTCAAGGCCCTGGCCCACCAGCCCGTCAGCGTCGCCATCGAGGCCT
CAGGCAGGAACTTCCAGTTCTACAGCGGGGGTGTGTTTGATGGTCCGTGCGGCACGCGGC
TGGATCATGGCGTGACGGCCGTTGGATACGGGACGGCCAGCAAGGGACACGATTACATCA
TCGTGAAGAACTCGTGGGGATCGCATTGGGGTGAGAAGGGGTACATCCGGATGAGGAGGG
GCACCGGCAAGCACGACGGCCTCTGCGGCATCAACAAGATGGCCTCCTACCCAACCAAGA
ACGCTTAAATTAAATCAGTTTCTTAATTTCAAGGATACAAAATAATAACACAAGAAGAGG
ACTCTCTTAATTCATCCTGCTTGTAAAGTTCGTTGTTGTTATCTCGGCACTTCCAAGTGT
TTCTCAGTACTCGTATTCATTGTTATTCATTTTCAATTCCCATCCACATTTCAAGATTGT
TTGTCTCTCATTATTTTTCATCGGTGAAAATTAAAGATGGTGATGGATAGATGTAATAAT
TACTGGGATTCCCTCTTTGTTTCTTTGTAATATTTATTAATAATCGGTGGCTACTTTGGG
GC