Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0970900-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:42840611:42842605:-1 gene:Os01g0970900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0970900-01);Pentatricopeptide repeat domain containing protein. (Os01t0970900-02)
Sequence

ATGGCGCCGCCGCCGCCGCCCACCGCCTTCTCCCGCCTCCGCCGCCTCTTCTCCACCGCC
GCCGCCACCGCCACCGCCCCGACCCCGGAATCCGTCCTCTACTCCCTCCGCACCCTCTCC
AAGGACCCCTCCGTCGCGCTCGCCTTCTTCCGCCGCTCCCAGGCCGGCGGCCACCCGCTG
GGATCCGCCGCCTACAACCTCATGCTCCGCACCCTCGCCTCCCACCCCACCTCCGCGCAC
TCCCACTTCTGGCCCTTCCTCCGCGACATGAACGACGCCGGCCACTCCATCGACCAGGGC
ACCTACCTCGCCGCCCTCGCCTCCTTCAAGAAGGCCAGCCTCACCGCCGACTACGCCTCC
CTCACCGCCCACTACGCCAAGGCCCAGGAGGACGCCAAGGGTGGGACCCCCACCTCCGCC
GCCGCCGACGCCGTCCGTGCCCTCGAGGATGGCTCGGATTCGGATGCTAGCGCGGAGCTC
GACGAGAAGCTGGAGGGCGTCGACCTGCCGCTAACGGAGACCGCCGTGGCCAGGGTGCTC
CGGGAGGTGAGGGACCATCCGATCAAGGCTCTAGCCTTCTTCAGGTGGGCGGGGCGTCAG
ATTGGGTACAAGCACGGTTCGGTGTCTTACAATGCCATGGTGAGGGTGCTCGGGCGAGAG
GAGTCCATGCGGGAGTTCTGGGACCTCATCCAAGAGATGAAGGCCGACGGGATTCATGTC
GATATCGACACCTATGTGAAGCTCTCGAGGCAGTTCCAGAAGCGCCACATGCTCACGGAG
GCCGTGGAGCTCTATGAGCTCATGATGGATGGTCCTTACAAGCCATCGAAGCAGGATGGT
CCGGTGCTCATCAGGCGCATTGCTCTGGGGCCTTCGCCGGACCTTGAGCTGGTCTATCGT
GTGGTTAGGAAGTTCGAGGCGGTGTGGGAGTTCAAGACTAAGGATGTTTTTGATGGCATC
CATAGGGCGCTGACGAGTAATGGGAGGTTTGATGAGGCTGCCGAGATCGTGAAGAGGATG
AAAGGCGAAGGTCATCAGCCAGACAATATTACGTATAGCCAACTGATCTTTGGGCTCTGC
AAGGCAAACAGGTTTGATGAAGCTCGCAAAGCGCTTGATGAAATGGAGGCTGAAGGGTGT
GTCCCCGACTTAAAGACTTGGACCATGTTGATCCAAGGTCACTGTGCGGCTGGGGAGGTG
GAAAAGGCCCTGCAGTACTTCACGGAAATGGTTGAGAAGAATTTGGAGGCAGATGCGGCT
TTGTTGGATGTAATGGTGAAAGGTCTCTGTAGCGATGATAAGATTGATGCGTCGTATGCT
TTCTTTGTTGAGATGGTAGACAAGGCCAACTTGAGCCCTTGGCAAGGCACTTACAAGCAT
ATAATTGGTGAATTGCTGAGGGTAAAGAAACTTGAGGAGGCTCTGGGTCTCCTGAGATCA
ATGAAAGCACGCAAGTTCCCACCTTTTGCAGACCCATTCCCTACTCACATCGCCAAGTAC
GGGACATTTGATGATGCAAGGCAGTTTCTCAAGGCCTTGACGGTGAATAACAAGTACCCA
TCACCCACTGCCTATCTGCATGTTTTCAAGTCATTTTTCACAGAGGGAAGATATTCAGAA
GCTCAGGATTTACTGTATAAATGCCCTTTCCATATCCGCAAGCATCCTGATGTCACCGAG
TTGTTTGAATCAATAAAAGTTGAAAGTGAGAGTGCGGCTTGA

Peptide Sequence

PEP ID

Os01t0970900-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:42840611:42842605:-1 gene:Os01g0970900 transcript:Os01t0970900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0970900-01);Pentatricopeptide repeat domain containing protein. (Os01t0970900-02)
Sequence

MAPPPPPTAFSRLRRLFSTAAATATAPTPESVLYSLRTLSKDPSVALAFFRRSQAGGHPL
GSAAYNLMLRTLASHPTSAHSHFWPFLRDMNDAGHSIDQGTYLAALASFKKASLTADYAS
LTAHYAKAQEDAKGGTPTSAAADAVRALEDGSDSDASAELDEKLEGVDLPLTETAVARVL
REVRDHPIKALAFFRWAGRQIGYKHGSVSYNAMVRVLGREESMREFWDLIQEMKADGIHV
DIDTYVKLSRQFQKRHMLTEAVELYELMMDGPYKPSKQDGPVLIRRIALGPSPDLELVYR
VVRKFEAVWEFKTKDVFDGIHRALTSNGRFDEAAEIVKRMKGEGHQPDNITYSQLIFGLC
KANRFDEARKALDEMEAEGCVPDLKTWTMLIQGHCAAGEVEKALQYFTEMVEKNLEADAA
LLDVMVKGLCSDDKIDASYAFFVEMVDKANLSPWQGTYKHIIGELLRVKKLEEALGLLRS
MKARKFPPFADPFPTHIAKYGTFDDARQFLKALTVNNKYPSPTAYLHVFKSFFTEGRYSE
AQDLLYKCPFHIRKHPDVTELFESIKVESESAA

Transcript Sequence

Transcript ID

Os01t0970900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:42840611:42842605:-1 gene:Os01g0970900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0970900-01);Pentatricopeptide repeat domain containing protein. (Os01t0970900-02)
Sequence

AACCAAAAGCCCTAGAGAAACCCCAACTGAGAGAGAGATGGCGCCGCCGCCGCCGCCCAC
CGCCTTCTCCCGCCTCCGCCGCCTCTTCTCCACCGCCGCCGCCACCGCCACCGCCCCGAC
CCCGGAATCCGTCCTCTACTCCCTCCGCACCCTCTCCAAGGACCCCTCCGTCGCGCTCGC
CTTCTTCCGCCGCTCCCAGGCCGGCGGCCACCCGCTGGGATCCGCCGCCTACAACCTCAT
GCTCCGCACCCTCGCCTCCCACCCCACCTCCGCGCACTCCCACTTCTGGCCCTTCCTCCG
CGACATGAACGACGCCGGCCACTCCATCGACCAGGGCACCTACCTCGCCGCCCTCGCCTC
CTTCAAGAAGGCCAGCCTCACCGCCGACTACGCCTCCCTCACCGCCCACTACGCCAAGGC
CCAGGAGGACGCCAAGGGTGGGACCCCCACCTCCGCCGCCGCCGACGCCGTCCGTGCCCT
CGAGGATGGCTCGGATTCGGATGCTAGCGCGGAGCTCGACGAGAAGCTGGAGGGCGTCGA
CCTGCCGCTAACGGAGACCGCCGTGGCCAGGGTGCTCCGGGAGGTGAGGGACCATCCGAT
CAAGGCTCTAGCCTTCTTCAGGTGGGCGGGGCGTCAGATTGGGTACAAGCACGGTTCGGT
GTCTTACAATGCCATGGTGAGGGTGCTCGGGCGAGAGGAGTCCATGCGGGAGTTCTGGGA
CCTCATCCAAGAGATGAAGGCCGACGGGATTCATGTCGATATCGACACCTATGTGAAGCT
CTCGAGGCAGTTCCAGAAGCGCCACATGCTCACGGAGGCCGTGGAGCTCTATGAGCTCAT
GATGGATGGTCCTTACAAGCCATCGAAGCAGGATGGTCCGGTGCTCATCAGGCGCATTGC
TCTGGGGCCTTCGCCGGACCTTGAGCTGGTCTATCGTGTGGTTAGGAAGTTCGAGGCGGT
GTGGGAGTTCAAGACTAAGGATGTTTTTGATGGCATCCATAGGGCGCTGACGAGTAATGG
GAGGTTTGATGAGGCTGCCGAGATCGTGAAGAGGATGAAAGGCGAAGGTCATCAGCCAGA
CAATATTACGTATAGCCAACTGATCTTTGGGCTCTGCAAGGCAAACAGGTTTGATGAAGC
TCGCAAAGCGCTTGATGAAATGGAGGCTGAAGGGTGTGTCCCCGACTTAAAGACTTGGAC
CATGTTGATCCAAGGTCACTGTGCGGCTGGGGAGGTGGAAAAGGCCCTGCAGTACTTCAC
GGAAATGGTTGAGAAGAATTTGGAGGCAGATGCGGCTTTGTTGGATGTAATGGTGAAAGG
TCTCTGTAGCGATGATAAGATTGATGCGTCGTATGCTTTCTTTGTTGAGATGGTAGACAA
GGCCAACTTGAGCCCTTGGCAAGGCACTTACAAGCATATAATTGGTGAATTGCTGAGGGT
AAAGAAACTTGAGGAGGCTCTGGGTCTCCTGAGATCAATGAAAGCACGCAAGTTCCCACC
TTTTGCAGACCCATTCCCTACTCACATCGCCAAGTACGGGACATTTGATGATGCAAGGCA
GTTTCTCAAGGCCTTGACGGTGAATAACAAGTACCCATCACCCACTGCCTATCTGCATGT
TTTCAAGTCATTTTTCACAGAGGGAAGATATTCAGAAGCTCAGGATTTACTGTATAAATG
CCCTTTCCATATCCGCAAGCATCCTGATGTCACCGAGTTGTTTGAATCAATAAAAGTTGA
AAGTGAGAGTGCGGCTTGATGAAGTGCAAGAAATTATTGGTGAGATTACGGCAAGCACCT
ACCTTTTTATACTCACTAGATGTTGTTTAGTAATCATGGTGTGATAGTTGCCACATCTAA
AGGATATTTTTGCTGAATTAACTTTCCTGTGCCACACTTGTTTCTTTTACTGTTGACAGT
ATCATTGCAGCTACATAGATGGCCTTTCCTAAAGTTACCATTCAAATTAAAGCACATCTG
CACATTTTTTTGGTG