Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0966000-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:42593541:42597970:-1 gene:Os01g0966000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plasma membrane H+-ATPase (EC 3.6.1.3). (Os01t0966000-01);Similar to Plasma membrane H+-ATPase (EC 3.6.1.3). (Os01t0966000-02);Similar to predicted protein. (Os01t0966000-03);Similar to OXP1 (OXOPROLINASE 1); 5-oxoprolinase (ATP-hydrolyzing)/ hydrolase. (Os01t0966000-04)
Sequence	ATGGGTAGCACGGAGAAATTCAGATTCTGCATTGACAGGGGCGGCACATTCACCGACATC TACGCAGAGGTGCCCGGGAGGAGGGAAGGCTACGTGATGAAACTTCTCTCCGTCGACCCG TCGAACTACGACGACGCCCCCATCGAAGGGATCAGGAGGATCCTCCAGGAGTTCTCCGGG GAGAGGATCCCGCGGTCGTCCAAGATTCCCACGGGCAAGATTGATTGGATTCGGATGGGC ACCACGGTGGCCACGAATGCGCTTCTTGAGAGGAAGGGTGAAAGGATCGCGCTGTGTGTC ACCCGGGGATTCAGGGATTTGCTTCAGATTGGTAACCAGGCTCGGCCGAACATATTCGAT CTCAAGGTGTCAAAGCCGTCGAATTTGTATGAGGAGGTGGTTGAGGTTGATGAGAGGGTT GAACTTGTTGGTGGTGGTGATGGTGAGAGGGATGATGGTTTATCTGTTAAAGGGATCTCA GGGGAATTGGTCAGGGTGGCGAAGCCGGTTGATGTAGAAGCATTGAAGCCTTTGTTGAAA GGTTTGCTTGACAAAGGAATAAGATGTTTGGCAGTGGTTTTAATGCACTCATATACTTAT CCTCAGCATGAGCTTCTCATTGAGAAATTATCTCTTGAGATGGGATTCAAGCATGTATCG TTGTCTTCATCATTGACGCCGATGGTCCGTGCTGTGCCTCGTGGCTTGACAGCCAGTGTG GATGCTTATCTCACACCAGTCATCAAAGAGTACCTATCAGGATTCATGTCCAGGTTTGAA GGGGGAGGTGAGCAGGTGAATGTGCTGTTTATGCAGTCAGATGGTGGTCTGGCACCAGAG AGGAGATTCTCCGGGCACAAAGCAGTGTTGTCAGGTCCTGCAGGTGGTGTGGTTGGCTAC TCTCAGACCTTGTTTCAACTTGAGACATCAAAACCGCTGATTGGATTTGACATGGGTGGT ACATCCACAGATGTTAGCCGCTACGATGGAAGCTATGAACAAGTTCTGGAGACCCAAATT GCTGGGGCAATAATACAAGCTCCCCAGCTTGACATAAACACGGTGGCTGCTGGTGGTGGA TCGAAGCTTAAGTTTCAGTTTGGAGCTTTCAAGGTTGGGCCAGATTCTGTTGGAGCACAT CCTGGTCCTGTATGCTATAGAAAAGGTGGTGAGCTGGCAATAACTGATGCCAATTTGATT CTGGGAACTGTTATTCCTGAGTACTTCCCATCCATATTTGGTCCTAACGAAGATTTACCC CTTGATTATGACGCTACTAAAAAGGCATTTGAGATTCTTGCTGTTGAGATAAACTCTCAC CGAAAGAGTCAGGATCCATCAGCAAAGGACATGACGGTTGAGGAGATTGCCCTCGGTTTT GTTAATGTTGCAAATGAGGCGATGTGCCGACCTATAAGGCAGTTGACCGAAATGAAGGGG CATGACACTAAGAACCATGCTCTCGCATGCTTTGGTGGTGCTGGTCCTCAACATGCATGT GCTATGGCAAGATCCCTTGGCATGTCTGAGTTACTTATTCATCGCTACTGTGGCATATTG AGTGCATATGGAATGGGCCTTGCTGATGTTATTGAAGATTTGCAAGAGCCATACTCTGCT ATTTATAATGTTGATTCTGCTGCAGAGGCATCTCGAAGAGTAGATCTTTTAGTTAAGCAG GTGAAAGAAAAGTTAATAGAGCAGGGTTTTGGAGAGGACAGCATCAGGACACATTCATAC TTGAACTTGAGGTACGAGGGAACCGATACAGCAATCATGGTTAAACAACCAGAGAGGGAA TCTGGAAGTGATTATGCTGATGAGTTTGTGAAACTGTTTCAGCAAGAGTATGGCTTCAAA TTATTAAACAGAAAAATACTCATATGTGATGTGAGGGTTCAGGGAGTTGGTGCTACAAAT ATCTTGCAGCCTCATGAACTGACACCAGTATCAACCAAACCTGTGCCAGAAAGTTCATGT CGAATTTATTTTTCATACGGATGGCAGGAAACACCACTTTACAAGCTTCAGAATTTGGGC TATGGGCATGTATTGAAGGGTCCTGCAGTTATAATGAATGGGAACAGTACAGTGATAGTA GAAAAAGACTGTAAAGCTATCATCACCAAGTATGGTAACATAAAAATTGAGATAAGTGCT GCTCCAAGCAGTGTAGAAGTATCAGAGACAGTTGCTGATGTGGTCCAACTTTCTATCTTC AATCATCGATTCATGGGTATTGCTGAACAGATGGGTCGAACACTTCAAAGAACTTCTATT TCTACCAATATAAAGGAAAGACTGGACTTTTCTTGTGCTCTCTTTGGTCCGGATGGTGGC CTTGTCGCAAATGCCCCTCATGTCCCTGTGCATTTGGGAGCCATGTCTAGCACCGTGCGT TGGCAACTCAAATATTGGGGTGATAATCTCCATGAGGGTGATGTTCTTGTAACGAATCAT CCATGTTCTGGGGGTAGCCATCTTCCAGACATAACAGTTGTCACACCTGTTTTCAATGAA GGTAAAGTTATCTTCTTTGTTGCTAGTAGAGGTCACCATGCAGAGATCGGTGGTATCACC CCAGGAAGCATGCCTCCTTTCTCAAAAAGCATCTGGGAGGAAGGTGCTGCCATCAAAGCA TTTAAACTTGTTGAGAGAGGTGTTTTCCAAGAGGAAGGAATAATTCACTTGCTACAGTCA CCGTCCTATGATGAACTTACAAACCATAAGATTCCAGGAACACGTAAGATCCAAGATAAT CTTTCTGACCTCCATGCTCAGGTGGCAGCAAACCAGCGGGGAATAACACTTATCAAAGAA CTGATAAATCAGTATGGTTTGATCACTGTTCAATCTTATATGAATCATGTCCAAAACAAT GCTGAAGAAGCTGTTAGAGAAATGCTTAAGGTAGTTGCATCGAGAGTTGAAAAGGAGAAT GGGTCTTGTGTCATCGAAGATGAAGATTACATGGATGATGGTTCTGTGCTCCATTTGAAG CTCACCCTTGATTCAAGTAAAGGCGAAGCAACCTTTGACTTTGAAGGCACCAGTCCTGAG GTGTATGGTAACTGGAATGCTCCTGAAGCAGTAACAGCGGCTGCTGTGATATACTGCTTA CGGTGCTTGGTCGACGTTGATATACCTCTAAATCAAGGCTGCCTAGCTCCTGTGAAGATC CTAATTCCTAAAGGCTCTTTCCTTTCTCCAAGTGACAAAGCTGCAGTGGTTGGTGGTAAT GTATTGACCTCTCAGAGAGTGACGGACGTAGTCCTAATGGCTTTCCAAGCATGCGCCTGC TCCCAGGGTTGCATGAACAATTTGACATTTGGAGACGACACCTTCGGTTACTATGAGACC ATTGGAGGCGGTTCAGGAGCTGGGGCGAGTTGGGATGGTACAAGTGGTGTTCAGTGTCAC ATGACAAACACAAGGATGACTGACCCAGAGATCTTTGAGCAGCGATACCCTGTTCTTTTA CATAGATTTAGCATCAGGGAGAACAGTGGAGGTTCTGGTTTCCACAGAGGTGGTGATGGC CTTGTGAGAGAGATTGAATTTTGCCAGCCTGTTGTTGTGAGCATTCTTTCAGAGAGAAGG GTGCATGCTCCCAGGGGACTGAAGGGAGGAAGAAATGGGGCCCGTGGTGCAAACTATCTC GTCAAGAAAGATGGTCGTAGAGTTTACCTTGGAGGGAAGAACACTGTTATGGTTAATGCT GGTGAGATTCTTCAGATTCTCACTCCTGGTGGTGGTGGTTTTGGCTCTCCTTGA

Peptide Sequence

PEP ID	Os01t0966000-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:42593541:42597970:-1 gene:Os01g0966000 transcript:Os01t0966000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plasma membrane H+-ATPase (EC 3.6.1.3). (Os01t0966000-01);Similar to Plasma membrane H+-ATPase (EC 3.6.1.3). (Os01t0966000-02);Similar to predicted protein. (Os01t0966000-03);Similar to OXP1 (OXOPROLINASE 1); 5-oxoprolinase (ATP-hydrolyzing)/ hydrolase. (Os01t0966000-04)
Sequence	MGSTEKFRFCIDRGGTFTDIYAEVPGRREGYVMKLLSVDPSNYDDAPIEGIRRILQEFSG ERIPRSSKIPTGKIDWIRMGTTVATNALLERKGERIALCVTRGFRDLLQIGNQARPNIFD LKVSKPSNLYEEVVEVDERVELVGGGDGERDDGLSVKGISGELVRVAKPVDVEALKPLLK GLLDKGIRCLAVVLMHSYTYPQHELLIEKLSLEMGFKHVSLSSSLTPMVRAVPRGLTASV DAYLTPVIKEYLSGFMSRFEGGGEQVNVLFMQSDGGLAPERRFSGHKAVLSGPAGGVVGY SQTLFQLETSKPLIGFDMGGTSTDVSRYDGSYEQVLETQIAGAIIQAPQLDINTVAAGGG SKLKFQFGAFKVGPDSVGAHPGPVCYRKGGELAITDANLILGTVIPEYFPSIFGPNEDLP LDYDATKKAFEILAVEINSHRKSQDPSAKDMTVEEIALGFVNVANEAMCRPIRQLTEMKG HDTKNHALACFGGAGPQHACAMARSLGMSELLIHRYCGILSAYGMGLADVIEDLQEPYSA IYNVDSAAEASRRVDLLVKQVKEKLIEQGFGEDSIRTHSYLNLRYEGTDTAIMVKQPERE SGSDYADEFVKLFQQEYGFKLLNRKILICDVRVQGVGATNILQPHELTPVSTKPVPESSC RIYFSYGWQETPLYKLQNLGYGHVLKGPAVIMNGNSTVIVEKDCKAIITKYGNIKIEISA APSSVEVSETVADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGG LVANAPHVPVHLGAMSSTVRWQLKYWGDNLHEGDVLVTNHPCSGGSHLPDITVVTPVFNE GKVIFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVERGVFQEEGIIHLLQS PSYDELTNHKIPGTRKIQDNLSDLHAQVAANQRGITLIKELINQYGLITVQSYMNHVQNN AEEAVREMLKVVASRVEKENGSCVIEDEDYMDDGSVLHLKLTLDSSKGEATFDFEGTSPE VYGNWNAPEAVTAAAVIYCLRCLVDVDIPLNQGCLAPVKILIPKGSFLSPSDKAAVVGGN VLTSQRVTDVVLMAFQACACSQGCMNNLTFGDDTFGYYETIGGGSGAGASWDGTSGVQCH MTNTRMTDPEIFEQRYPVLLHRFSIRENSGGSGFHRGGDGLVREIEFCQPVVVSILSERR VHAPRGLKGGRNGARGANYLVKKDGRRVYLGGKNTVMVNAGEILQILTPGGGGFGSP

Transcript Sequence

Transcript ID	Os01t0966000-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:42593541:42597970:-1 gene:Os01g0966000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plasma membrane H+-ATPase (EC 3.6.1.3). (Os01t0966000-01);Similar to Plasma membrane H+-ATPase (EC 3.6.1.3). (Os01t0966000-02);Similar to predicted protein. (Os01t0966000-03);Similar to OXP1 (OXOPROLINASE 1); 5-oxoprolinase (ATP-hydrolyzing)/ hydrolase. (Os01t0966000-04)
Sequence	AGAGCCAGAGGCTGCTTCCTCCCTCCTTCTCTCGGTGCGACGGTTTAGGCGGCAGCGCAC GGTGACGGCGGCAGCACGGCGCACGGCAACTGGGGCGACGCAGCACGGTGACGGTGGCAG GGTTGGAGCACGGTGGCGAGCAGAGCAGGGGAGGGGATCCTGAGGACGCAGATTCTGAGA GTACCTCGAAGTTAGGATGGGTAGCACGGAGAAATTCAGATTCTGCATTGACAGGGGCGG CACATTCACCGACATCTACGCAGAGGTGCCCGGGAGGAGGGAAGGCTACGTGATGAAACT TCTCTCCGTCGACCCGTCGAACTACGACGACGCCCCCATCGAAGGGATCAGGAGGATCCT CCAGGAGTTCTCCGGGGAGAGGATCCCGCGGTCGTCCAAGATTCCCACGGGCAAGATTGA TTGGATTCGGATGGGCACCACGGTGGCCACGAATGCGCTTCTTGAGAGGAAGGGTGAAAG GATCGCGCTGTGTGTCACCCGGGGATTCAGGGATTTGCTTCAGATTGGTAACCAGGCTCG GCCGAACATATTCGATCTCAAGGTGTCAAAGCCGTCGAATTTGTATGAGGAGGTGGTTGA GGTTGATGAGAGGGTTGAACTTGTTGGTGGTGGTGATGGTGAGAGGGATGATGGTTTATC TGTTAAAGGGATCTCAGGGGAATTGGTCAGGGTGGCGAAGCCGGTTGATGTAGAAGCATT GAAGCCTTTGTTGAAAGGTTTGCTTGACAAAGGAATAAGATGTTTGGCAGTGGTTTTAAT GCACTCATATACTTATCCTCAGCATGAGCTTCTCATTGAGAAATTATCTCTTGAGATGGG ATTCAAGCATGTATCGTTGTCTTCATCATTGACGCCGATGGTCCGTGCTGTGCCTCGTGG CTTGACAGCCAGTGTGGATGCTTATCTCACACCAGTCATCAAAGAGTACCTATCAGGATT CATGTCCAGGTTTGAAGGGGGAGGTGAGCAGGTGAATGTGCTGTTTATGCAGTCAGATGG TGGTCTGGCACCAGAGAGGAGATTCTCCGGGCACAAAGCAGTGTTGTCAGGTCCTGCAGG TGGTGTGGTTGGCTACTCTCAGACCTTGTTTCAACTTGAGACATCAAAACCGCTGATTGG ATTTGACATGGGTGGTACATCCACAGATGTTAGCCGCTACGATGGAAGCTATGAACAAGT TCTGGAGACCCAAATTGCTGGGGCAATAATACAAGCTCCCCAGCTTGACATAAACACGGT GGCTGCTGGTGGTGGATCGAAGCTTAAGTTTCAGTTTGGAGCTTTCAAGGTTGGGCCAGA TTCTGTTGGAGCACATCCTGGTCCTGTATGCTATAGAAAAGGTGGTGAGCTGGCAATAAC TGATGCCAATTTGATTCTGGGAACTGTTATTCCTGAGTACTTCCCATCCATATTTGGTCC TAACGAAGATTTACCCCTTGATTATGACGCTACTAAAAAGGCATTTGAGATTCTTGCTGT TGAGATAAACTCTCACCGAAAGAGTCAGGATCCATCAGCAAAGGACATGACGGTTGAGGA GATTGCCCTCGGTTTTGTTAATGTTGCAAATGAGGCGATGTGCCGACCTATAAGGCAGTT GACCGAAATGAAGGGGCATGACACTAAGAACCATGCTCTCGCATGCTTTGGTGGTGCTGG TCCTCAACATGCATGTGCTATGGCAAGATCCCTTGGCATGTCTGAGTTACTTATTCATCG CTACTGTGGCATATTGAGTGCATATGGAATGGGCCTTGCTGATGTTATTGAAGATTTGCA AGAGCCATACTCTGCTATTTATAATGTTGATTCTGCTGCAGAGGCATCTCGAAGAGTAGA TCTTTTAGTTAAGCAGGTGAAAGAAAAGTTAATAGAGCAGGGTTTTGGAGAGGACAGCAT CAGGACACATTCATACTTGAACTTGAGGTACGAGGGAACCGATACAGCAATCATGGTTAA ACAACCAGAGAGGGAATCTGGAAGTGATTATGCTGATGAGTTTGTGAAACTGTTTCAGCA AGAGTATGGCTTCAAATTATTAAACAGAAAAATACTCATATGTGATGTGAGGGTTCAGGG AGTTGGTGCTACAAATATCTTGCAGCCTCATGAACTGACACCAGTATCAACCAAACCTGT GCCAGAAAGTTCATGTCGAATTTATTTTTCATACGGATGGCAGGAAACACCACTTTACAA GCTTCAGAATTTGGGCTATGGGCATGTATTGAAGGGTCCTGCAGTTATAATGAATGGGAA CAGTACAGTGATAGTAGAAAAAGACTGTAAAGCTATCATCACCAAGTATGGTAACATAAA AATTGAGATAAGTGCTGCTCCAAGCAGTGTAGAAGTATCAGAGACAGTTGCTGATGTGGT CCAACTTTCTATCTTCAATCATCGATTCATGGGTATTGCTGAACAGATGGGTCGAACACT TCAAAGAACTTCTATTTCTACCAATATAAAGGAAAGACTGGACTTTTCTTGTGCTCTCTT TGGTCCGGATGGTGGCCTTGTCGCAAATGCCCCTCATGTCCCTGTGCATTTGGGAGCCAT GTCTAGCACCGTGCGTTGGCAACTCAAATATTGGGGTGATAATCTCCATGAGGGTGATGT TCTTGTAACGAATCATCCATGTTCTGGGGGTAGCCATCTTCCAGACATAACAGTTGTCAC ACCTGTTTTCAATGAAGGTAAAGTTATCTTCTTTGTTGCTAGTAGAGGTCACCATGCAGA GATCGGTGGTATCACCCCAGGAAGCATGCCTCCTTTCTCAAAAAGCATCTGGGAGGAAGG TGCTGCCATCAAAGCATTTAAACTTGTTGAGAGAGGTGTTTTCCAAGAGGAAGGAATAAT TCACTTGCTACAGTCACCGTCCTATGATGAACTTACAAACCATAAGATTCCAGGAACACG TAAGATCCAAGATAATCTTTCTGACCTCCATGCTCAGGTGGCAGCAAACCAGCGGGGAAT AACACTTATCAAAGAACTGATAAATCAGTATGGTTTGATCACTGTTCAATCTTATATGAA TCATGTCCAAAACAATGCTGAAGAAGCTGTTAGAGAAATGCTTAAGGTAGTTGCATCGAG AGTTGAAAAGGAGAATGGGTCTTGTGTCATCGAAGATGAAGATTACATGGATGATGGTTC TGTGCTCCATTTGAAGCTCACCCTTGATTCAAGTAAAGGCGAAGCAACCTTTGACTTTGA AGGCACCAGTCCTGAGGTGTATGGTAACTGGAATGCTCCTGAAGCAGTAACAGCGGCTGC TGTGATATACTGCTTACGGTGCTTGGTCGACGTTGATATACCTCTAAATCAAGGCTGCCT AGCTCCTGTGAAGATCCTAATTCCTAAAGGCTCTTTCCTTTCTCCAAGTGACAAAGCTGC AGTGGTTGGTGGTAATGTATTGACCTCTCAGAGAGTGACGGACGTAGTCCTAATGGCTTT CCAAGCATGCGCCTGCTCCCAGGGTTGCATGAACAATTTGACATTTGGAGACGACACCTT CGGTTACTATGAGACCATTGGAGGCGGTTCAGGAGCTGGGGCGAGTTGGGATGGTACAAG TGGTGTTCAGTGTCACATGACAAACACAAGGATGACTGACCCAGAGATCTTTGAGCAGCG ATACCCTGTTCTTTTACATAGATTTAGCATCAGGGAGAACAGTGGAGGTTCTGGTTTCCA CAGAGGTGGTGATGGCCTTGTGAGAGAGATTGAATTTTGCCAGCCTGTTGTTGTGAGCAT TCTTTCAGAGAGAAGGGTGCATGCTCCCAGGGGACTGAAGGGAGGAAGAAATGGGGCCCG TGGTGCAAACTATCTCGTCAAGAAAGATGGTCGTAGAGTTTACCTTGGAGGGAAGAACAC TGTTATGGTTAATGCTGGTGAGATTCTTCAGATTCTCACTCCTGGTGGTGGTGGTTTTGG CTCTCCTTGATGGCTATTCTTGTGGACGATCATCTACCTCGCTTCTGGGTATTGTCATTT CTACTTCTTTAGTCCTACTTTTATCCACAAATAAAACATGCAGAAGGCAGAAACTTGC