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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0962300-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:42417731:42418739:1 gene:Os01g0962300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment). (Os01t0962300-00)
Sequence

ATGTCTTCCACGTTCAACGGCGACGAGTTCGCCCCGTTCTTGGGCTTCATCGGCGCCGCC
CTCGCCCTCGTCTTCTCATGCATGGGGGCGGCGTACGGGACGGCTCGGAGCGGCGTCGGG
GTGGCGCACATGGGGGTGATGCGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGTG
ATGGCCGGAGTGCTGGGGATCTACGGCCTCATCATCGCTGTCATCATCACCACCGGCATC
AACCCGACGGCGATGCCGTACTACCACTTCGACGGCTCCGTCCACCTCGCCGCGGGGCTC
GCCACGGGGCTCTGCGCCCTCGCCGCCGGCCTCGCCATCGGCGTCGTCGGCGACGCCGGC
GTCAGGGCCAACGCGCAGCAGCCCAAGCTGTTCGTCGGCATGATCCTCATCCTCATCTTC
GCCGAGGCGCTTGGCCTCTACGGCCTCATCGTCGGCATCATCCTCTCCTCCCGCGCCGGC
CAGTCGCGCGCCCACTAA

Peptide Sequence

PEP ID

Os01t0962300-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:42417731:42418739:1 gene:Os01g0962300 transcript:Os01t0962300-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment). (Os01t0962300-00)
Sequence

MSSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVV
MAGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHLAAGLATGLCALAAGLAIGVVGDAG
VRANAQQPKLFVGMILILIFAEALGLYGLIVGIILSSRAGQSRAH

Transcript Sequence

Transcript ID

Os01t0962300-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:42417731:42418739:1 gene:Os01g0962300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment). (Os01t0962300-00)
Sequence

TCTCTCCCTCCCTCATCGATCGATCCATCGCCGGCGAAGAGCTACCTTAGCTATTAGTAT
CATCGATCATCTCCGGCGAGAAGACATGTCTTCCACGTTCAACGGCGACGAGTTCGCCCC
GTTCTTGGGCTTCATCGGCGCCGCCCTCGCCCTCGTCTTCTCATGCATGGGGGCGGCGTA
CGGGACGGCTCGGAGCGGCGTCGGGGTGGCGCACATGGGGGTGATGCGGCCGGAGCTGGT
GATGAAGTCGATCGTGCCGGTGGTGATGGCCGGAGTGCTGGGGATCTACGGCCTCATCAT
CGCTGTCATCATCACCACCGGCATCAACCCGACGGCGATGCCGTACTACCACTTCGACGG
CTCCGTCCACCTCGCCGCGGGGCTCGCCACGGGGCTCTGCGCCCTCGCCGCCGGCCTCGC
CATCGGCGTCGTCGGCGACGCCGGCGTCAGGGCCAACGCGCAGCAGCCCAAGCTGTTCGT
CGGCATGATCCTCATCCTCATCTTCGCCGAGGCGCTTGGCCTCTACGGCCTCATCGTCGG
CATCATCCTCTCCTCCCGCGCCGGCCAGTCGCGCGCCCACTAA