Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0960500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:42350945:42355276:-1 gene:Os01g0960500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0960500-01)
Sequence

ATGTGGGGCGATCGGACTCATCACAAGCACTGGAATCAAGCTCATGTTCCCTCTGGAACT
TCTAAGGACAAATTCCAGGCCAAAGGGCAACCGAAGTTTATTCCTGACAATTACAGTTCA
GTGGATGAGGTTACTGCTGCGTTGAGAGACGCTGGTCTTGAGTCATCAAATCTGATTCTT
GGTATTGACTTCACCAAAAGCAATGAATGGTCAGGCAGATATTCCTTTGGAAGAAAATCT
CTGCATGCCATTAGTGCCACCCCTAATCCATATGAGCAAGCAATTTCTATAATTGGGCGA
ACACTGTCTCCTTTTGATGATGACAACTTGATACCATGTTTTGGATTTGGTGATGCTTCT
ACGCATGATCAGTCCGTCTTCAGCTTCTACCAAGACAGTCGTTCTTGCTGTGGTTTTGAA
GAGGTTCTTGAAAGATATAGGCAAATTGTCCCACATTTGAACCTTTCAGGACCGACTTCT
TTTGCTCCTCTTATCTACGCAGCAATTTCTGTTGTCGAAAATAGTAACTTGCAATACCAT
GTCCTCGTCATCATAGCTGATGGACAGGTGACCACCTCAAATACAAAGGATGGAAAATTA
AGTCCGCAAGAGCAAGCAACTATACAAGCAATTGTTGATGCAAGCTACTATCCTCTTTCA
ATTGTGATGGTTGGGGTGGGAGATGGGCCATGGGATGCGATGCAACACTTCGATGACTGT
ATTCCTGACAGAGCTTTTGACAATTTTCAGTTTGTGAACTTCACAGAGATTATGTCAACA
AGTAAGGATATGCCAAAGAAAGAGGCTGCATTTGCCCTTGCAGCCCTTATGGAAATACCT
TCTCAATATAAAGCAACTCAAGGCCTCCGACCACTGGAGAAGCATGCGGGTCATGTGGCC
AGTCATCTGAGGATTCTTCCTCCTCCAAACAAAGTTCTTGAGAACGACAACGCTGCAGCC
TCACGTCCTCCAACTGCAAGCTCCCAGTCAACTGGCTTCGGAAAGAATACCACTGATGAG
CAGGTTTGCCCAATCTGCTTAACCAATCCAAAGGACATGGCTTTTCAATGCGGTCACCTG
ACATGCAAGGAATGTGGCCCAACTCTATCAACATGCCCCTTATGCCGCGTGCCAATTACG
ATGCGTGTAAGGCTCTACTCGTGA

Peptide Sequence

PEP ID

Os01t0960500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:42350945:42355276:-1 gene:Os01g0960500 transcript:Os01t0960500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0960500-01)
Sequence

MWGDRTHHKHWNQAHVPSGTSKDKFQAKGQPKFIPDNYSSVDEVTAALRDAGLESSNLIL
GIDFTKSNEWSGRYSFGRKSLHAISATPNPYEQAISIIGRTLSPFDDDNLIPCFGFGDAS
THDQSVFSFYQDSRSCCGFEEVLERYRQIVPHLNLSGPTSFAPLIYAAISVVENSNLQYH
VLVIIADGQVTTSNTKDGKLSPQEQATIQAIVDASYYPLSIVMVGVGDGPWDAMQHFDDC
IPDRAFDNFQFVNFTEIMSTSKDMPKKEAAFALAALMEIPSQYKATQGLRPLEKHAGHVA
SHLRILPPPNKVLENDNAAASRPPTASSQSTGFGKNTTDEQVCPICLTNPKDMAFQCGHL
TCKECGPTLSTCPLCRVPITMRVRLYS

Transcript Sequence

Transcript ID

Os01t0960500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:42350945:42355276:-1 gene:Os01g0960500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0960500-01)
Sequence

GGGTGTTATATTCTGAAAATTCTCCTTCCACTGCCACCGCACAAGCAAGGGCAAAGCTTA
GCTTAGCTTCGCTGGTAGTGGTGGTGGCTGTGCCGTCCAGCCGCTGCCATCTTCCTCACC
AGCAGCAGCTAGCAGCGGCGCCCTTCTCCGGCCTCTCCGTGCTTTGCTGTTCTTTGCTTT
GGTTCGGGGATCCGATTTCCATTCCATCCATCTCTTGCTCCCGCGGGTCTCGTCTCTGTC
TGTGTTTCCCTGATCATTCATTACTGGTCATGTGGGGCGATCGGACTCATCACAAGCACT
GGAATCAAGCTCATGTTCCCTCTGGAACTTCTAAGGACAAATTCCAGGCCAAAGGGCAAC
CGAAGTTTATTCCTGACAATTACAGTTCAGTGGATGAGGTTACTGCTGCGTTGAGAGACG
CTGGTCTTGAGTCATCAAATCTGATTCTTGGTATTGACTTCACCAAAAGCAATGAATGGT
CAGGCAGATATTCCTTTGGAAGAAAATCTCTGCATGCCATTAGTGCCACCCCTAATCCAT
ATGAGCAAGCAATTTCTATAATTGGGCGAACACTGTCTCCTTTTGATGATGACAACTTGA
TACCATGTTTTGGATTTGGTGATGCTTCTACGCATGATCAGTCCGTCTTCAGCTTCTACC
AAGACAGTCGTTCTTGCTGTGGTTTTGAAGAGGTTCTTGAAAGATATAGGCAAATTGTCC
CACATTTGAACCTTTCAGGACCGACTTCTTTTGCTCCTCTTATCTACGCAGCAATTTCTG
TTGTCGAAAATAGTAACTTGCAATACCATGTCCTCGTCATCATAGCTGATGGACAGGTGA
CCACCTCAAATACAAAGGATGGAAAATTAAGTCCGCAAGAGCAAGCAACTATACAAGCAA
TTGTTGATGCAAGCTACTATCCTCTTTCAATTGTGATGGTTGGGGTGGGAGATGGGCCAT
GGGATGCGATGCAACACTTCGATGACTGTATTCCTGACAGAGCTTTTGACAATTTTCAGT
TTGTGAACTTCACAGAGATTATGTCAACAAGTAAGGATATGCCAAAGAAAGAGGCTGCAT
TTGCCCTTGCAGCCCTTATGGAAATACCTTCTCAATATAAAGCAACTCAAGGCCTCCGAC
CACTGGAGAAGCATGCGGGTCATGTGGCCAGTCATCTGAGGATTCTTCCTCCTCCAAACA
AAGTTCTTGAGAACGACAACGCTGCAGCCTCACGTCCTCCAACTGCAAGCTCCCAGTCAA
CTGGCTTCGGAAAGAATACCACTGATGAGCAGGTTTGCCCAATCTGCTTAACCAATCCAA
AGGACATGGCTTTTCAATGCGGTCACCTGACATGCAAGGAATGTGGCCCAACTCTATCAA
CATGCCCCTTATGCCGCGTGCCAATTACGATGCGTGTAAGGCTCTACTCGTGAGGTCATC
TGACCTTCTAGAATGCAGGAACAAAGGACTCAATTCAATCAGTATAGTGTATATGGTGTC
GAACAGTAAGGAGATGAAGAACTCGGAAGCACAAGGACTCTCAATTCATGCCAAGATGCG
GATGGCGTGAAAACTATGTGAAAAAAAAGGCTAAATTAAACTATGCTGGATTAGTTTCAG
TTTCAAAGGACAGGTATATCCTTTGGGATATTGTATTTGTTTCTTTTTCTTGTATGTAGT
AGGAATAAGCTGACCTGTGATGCTTGGCCCAAAGAACTTACCGAAGGCAGTTGCGGAGAT
GGCTTTGCTGCTGCATTGTTGATCTTCAGAGACAATCCTAATTGGGACGATTTCAAGTAG
TGAAGTACCAATACATCCTTTCCTTTTGTCTTGCAGATCAAATTCCCTGTGACTGCAATC
GACCTGTTCTAATTGCAGGGATATAAAAGTGTGAAACAATGGGAGAAACACACGGTACCA
GTCATCTTATTCTGAAACTCGTAATGGAGGTCGATCTGAATGGATCAGCTACGTTACGTG
CTCAGCTCGTTGTAATCTATTTTAGCAGCTGATTGTGTTATTTACTTCATCTTTTCAATT
TCTACTCCCTAGTTTTTGGTCC