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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0960000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:42315264:42317679:1 gene:Os01g0960000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit domain containing protein. (Os01t0960000-01)
Sequence

ATGGAGGCAAGGGTTGCCGGAGTGCCCGAAGACGAGGAATCCGGCCTCCTCCCCCGCCCG
TCCGCCGCCGGCCGCCGCCCATCCGTCGCCGCCGCGCGCCGCGCGCCTCCGCCTCCAGTC
TGGGCCACCGTGGACGGGCCCCTGGGGCTGCCGCTGGAGGAGGCGGAGGGCCACGCTCGC
CGCTTCTTCCTCTGGGGGTTCGCCTGCCTCCCCTTCCTCTGGGCCATCAACTGCTGCTAC
TTCTGGCCCGTCCTCCGCTCGCCGGCGACCTTCCCCTCTTCCGCCGCCTTCTCCCGAATC
CGCCCCTATGTTGTCCGGTCAGCAATTGGCTTTACCATTTTCTCGGTGGTTCTACTCACC
TGGGCCACAACATTTATAATTGGTGGCGAGCGATTATTTGGGCCAGGGTGGAACGATCTA
GTGATGTACAACGTTGCAGACAAGCTTGGTATCAGTGGGTTCATGGGATAG

Peptide Sequence

PEP ID

Os01t0960000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:42315264:42317679:1 gene:Os01g0960000 transcript:Os01t0960000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit domain containing protein. (Os01t0960000-01)
Sequence

MEARVAGVPEDEESGLLPRPSAAGRRPSVAAARRAPPPPVWATVDGPLGLPLEEAEGHAR
RFFLWGFACLPFLWAINCCYFWPVLRSPATFPSSAAFSRIRPYVVRSAIGFTIFSVVLLT
WATTFIIGGERLFGPGWNDLVMYNVADKLGISGFMG

Transcript Sequence

Transcript ID

Os01t0960000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:42315264:42317679:1 gene:Os01g0960000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit domain containing protein. (Os01t0960000-01)
Sequence

AAAAGAGGAAAAACAGTGATGGAGGCAAGGGTTGCCGGAGTGCCCGAAGACGAGGAATCC
GGCCTCCTCCCCCGCCCGTCCGCCGCCGGCCGCCGCCCATCCGTCGCCGCCGCGCGCCGC
GCGCCTCCGCCTCCAGTCTGGGCCACCGTGGACGGGCCCCTGGGGCTGCCGCTGGAGGAG
GCGGAGGGCCACGCTCGCCGCTTCTTCCTCTGGGGGTTCGCCTGCCTCCCCTTCCTCTGG
GCCATCAACTGCTGCTACTTCTGGCCCGTCCTCCGCTCGCCGGCGACCTTCCCCTCTTCC
GCCGCCTTCTCCCGAATCCGCCCCTATGTTGTCCGGTCAGCAATTGGCTTTACCATTTTC
TCGGTGGTTCTACTCACCTGGGCCACAACATTTATAATTGGTGGCGAGCGATTATTTGGG
CCAGGGTGGAACGATCTAGTGATGTACAACGTTGCAGACAAGCTTGGTATCAGTGGGTTC
ATGGGATAGCTTCCATTTTATGCCTCGTTTTGAGCAGTCTTCATCTGACCATTTGTCTCA
GTTCCTGTACTCTGTAAGACGATGTTTCCATCTGGTAAAGGTAGTAGCAGGTTTCACCCA
CATTGATAGACTTCCTGGTTCTTGATACAATTTGATGTAGTGTAATGTCAGCCATCAGTT
CATCACTAGTGGTTAGACTGAAGATCGCTGTGACTTGAGTTTGTAGAGAAAACAGATTGT
TCCTAAGTGCATATGTTTGTCACAAGATTATATGTCTATCTAACCTGAAACCTGTGCTAG
CTTTGAGATAAC