Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0959600-00
CDS Infomation	cds chromosome:IRGSP-1.0:1:42297103:42299800:1 gene:Os01g0959600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Empty Pericarp5 description:Pentatricopeptide repeat domain containing protein. (Os01t0959600-00)
Sequence	ATGAGATTGAGTTTTTTTATAGAGGGAAGGGAGTATGTGTGTAGAAAAGTTCGATGTGAC GAAAAAGTTGGAAGTTTGAAAAAAAAATTAGAATCTAAACAGGAACTAACCCAAAAACTT ACTCGCGCCTCCTCTCGTGCGGAGGCGGGAGCAGAGATGCCGCCGCCGCCGCCGTTCCCG TCGCTGGACGCCTTCTACCTCCACCTCCTCCGCGCCTGCACCTCGCTGCGCCACGCCGCC GCCGTCCATGCCCACATCGCCCGCGCCCACCCGGCCGCCTCCCTTTTCCTCCGCAACACC CTCCTCGCCGCCTACTGCCGCCTCGGGGGCCCACTCCCCGCGCGCCGCCTGCTCGACGAA ATGCCCCGCCGCAACGCCGTCTCCTTCAACCTCCTCATCGACGCCTACTCCCGGGAAGGG CTCGCGCCCCTCTCTCTGGAGACCCTCGCGCGGGCGCGGCGCGCGGGGGTCGACGTCGAC CGGTTCTCGTACGCGGCCGCGCTCGCCGCGTGCTCGCGGGCGGGGCACCTGAGGGCCGGC AGGGCCGTGCACGCGCTGGCCATTCTTGATGGTCTCTCCAGCGGGGTGTTCGTCTCCAAT TCGCTTGTCAGCATGTACTCCAAGTGCGGCGAGATGGGCGAGGCGAGGCGTGTGTTCGAC GTTGCCGAGGAGAGGGATGATGTCTCCTGGAACTCGTTGGTCTCAGGGTATGTGCGCGCC GGCGCGCGCGAGGAGATGGTAAGGGTGTTTGCTATGATGCGCCGCGGTGGAATGGGTCTG AATTCATTTGCTCTTGGGAGTGTCATCAAGTGTTGCTCTGGCCGTGGAGATGGAACAATG GACATCGCTGAGGCAGTTCATGGATGTGTTATAAAGGCTGGGCTTGACTCTGATGTGTTT CTTGTGAGCGCCATGATTGACATGTATGCCAAGAAAGGTGCCTTAGTGGAAGCTGCCGCG CTCTTTCGGTCGGTGCAAGAGCCCAATGTGGTCATGTTCAACACTATGATTGCCGGTTTT TGTCGTACTGAGACTGTAATTGGTAAGGAAGTTGCAAGTGAAGCGCTAACTCTGTATTCA GAGGTGCAGAGTCGTGGAATGCAGCCTACTGAGTTCACATTCTCTAGTGTGTTACGGGCT TGCAACCTTGCTGGTTACCTTGAATTTGGAAAACAAATACATGGCCAAGTGATCAAGTAC ACTTTCCAGGAAGATGATTTCATCGGGAGTGCGCTTATTGACTTGTACTTCAACTCTGGC TGTATGGAAGATGGGTTTAGGTGCTTCAGATCCAGCCCCAAGCATGATATTGTTACCTGG ACAGCAATGGTTTCTGGGTGTGTTCAAAATGAACTTCATGAGAAGGCTCTGAGTTTGTTT CATGAATCTTTAGGTGCTGGATTGAAACCGGATCTTTTTACTATATCTAGTGTGATGAAT GCATGCGCAAGTTTAGCTGTTGCAAGGGCTGGTGAGCAGATCCAGTGCTTTGCCACGAAA TCTGGTTTTGACCGGTTCACTGTCATGGGGAACTCTTGCGTGCATATGTATGCTAGATCA GGGGATGTTGATGCTGCAACTCGGAGGTTTCAGGAAATGGAATCACACGATGTTGTCTCT TGGTCTGCAGTGATATCATGCCATGCACAGCATGGTTGTGCAAGGGATGCTTTACATTTT TTTGATGAAATGGTGGATGCAAAGGTGGTGCCAAATGAGATCACTTTTCTTGGTGTCCTT ACTGCCTGTAGCCATGGAGGATTGGTTGATGAGGGACTCAGGTATTATGAAACTATGACT AAGGATTATGGGTTGAGTCCAACCATAAAGCATTGCACTTGTGTTGTTGATCTCCTTGGA CGAGCTGGGAGACTAGCTGATGCTGAGGCTTTTATAAGCAATTCAATCTTCCATGCTGAC CCAGTCATTTGGCGGTCTTTGCTGGCCTCATGTCGAATTCATAGAGACCTGGAGAGAGGT CAACTTGTCGCGAATCGGATAATGGAACTAGAACCCACTTCGTCAGCGTCCTATGTAATT CTTTACAACATGTACCTGGATGCTGGGGAGCTCTCGTTGGCTTCAAAAACTAGGGATCTG ATGAAACAGCGAGGTGTGAAGAAAGAACCTGGCCTGAGTTGGATAGAACTGAAGTGTGGA GTTCACTCTTTTGTTGCTGGTGACAAGTCTCATCCAGAGAGCAGTGCAATATACACAAAA CTGGAAGAGATGCTTTCCAGGATCGAGAAGTTGGCGACCACTGATACTGAAATCTCTAAA AGGGAGCAAAATCTGATGAATTGCCATAGTGAAAAACTAGCTGTGGCATTAGGAATGATT CACTTGCCTCAGTCAGCACCTATAAGAGTAATGAAGAATCTGAGAGTTTGTCGTGATTGC CACTCAACAATGAAACTGATATCAAAGAGTGAAAACAGAGAGATCATATTGAGAGATCCA ATTCGCTTCCATCACTTTAGAGATGGTTCATGTTCTTGCGCTGATTATTGGTAG

Peptide Sequence

PEP ID	Os01t0959600-00
PEP Infomation	pep chromosome:IRGSP-1.0:1:42297103:42299800:1 gene:Os01g0959600 transcript:Os01t0959600-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Empty Pericarp5 description:Pentatricopeptide repeat domain containing protein. (Os01t0959600-00)
Sequence	MRLSFFIEGREYVCRKVRCDEKVGSLKKKLESKQELTQKLTRASSRAEAGAEMPPPPPFP SLDAFYLHLLRACTSLRHAAAVHAHIARAHPAASLFLRNTLLAAYCRLGGPLPARRLLDE MPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSRAGHLRAG RAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRA GAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVF LVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYS EVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSG CMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMN ACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVS WSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMT KDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRDLERG QLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCG VHSFVAGDKSHPESSAIYTKLEEMLSRIEKLATTDTEISKREQNLMNCHSEKLAVALGMI HLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRDGSCSCADYW

Transcript Sequence

Transcript ID	Os01t0959600-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:42297103:42299800:1 gene:Os01g0959600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Empty Pericarp5 description:Pentatricopeptide repeat domain containing protein. (Os01t0959600-00)
Sequence	ATGAGATTGAGTTTTTTTATAGAGGGAAGGGAGTATGTGTGTAGAAAAGTTCGATGTGAC GAAAAAGTTGGAAGTTTGAAAAAAAAATTAGAATCTAAACAGGAACTAACCCAAAAACTT ACTCGCGCCTCCTCTCGTGCGGAGGCGGGAGCAGAGATGCCGCCGCCGCCGCCGTTCCCG TCGCTGGACGCCTTCTACCTCCACCTCCTCCGCGCCTGCACCTCGCTGCGCCACGCCGCC GCCGTCCATGCCCACATCGCCCGCGCCCACCCGGCCGCCTCCCTTTTCCTCCGCAACACC CTCCTCGCCGCCTACTGCCGCCTCGGGGGCCCACTCCCCGCGCGCCGCCTGCTCGACGAA ATGCCCCGCCGCAACGCCGTCTCCTTCAACCTCCTCATCGACGCCTACTCCCGGGAAGGG CTCGCGCCCCTCTCTCTGGAGACCCTCGCGCGGGCGCGGCGCGCGGGGGTCGACGTCGAC CGGTTCTCGTACGCGGCCGCGCTCGCCGCGTGCTCGCGGGCGGGGCACCTGAGGGCCGGC AGGGCCGTGCACGCGCTGGCCATTCTTGATGGTCTCTCCAGCGGGGTGTTCGTCTCCAAT TCGCTTGTCAGCATGTACTCCAAGTGCGGCGAGATGGGCGAGGCGAGGCGTGTGTTCGAC GTTGCCGAGGAGAGGGATGATGTCTCCTGGAACTCGTTGGTCTCAGGGTATGTGCGCGCC GGCGCGCGCGAGGAGATGGTAAGGGTGTTTGCTATGATGCGCCGCGGTGGAATGGGTCTG AATTCATTTGCTCTTGGGAGTGTCATCAAGTGTTGCTCTGGCCGTGGAGATGGAACAATG GACATCGCTGAGGCAGTTCATGGATGTGTTATAAAGGCTGGGCTTGACTCTGATGTGTTT CTTGTGAGCGCCATGATTGACATGTATGCCAAGAAAGGTGCCTTAGTGGAAGCTGCCGCG CTCTTTCGGTCGGTGCAAGAGCCCAATGTGGTCATGTTCAACACTATGATTGCCGGTTTT TGTCGTACTGAGACTGTAATTGGTAAGGAAGTTGCAAGTGAAGCGCTAACTCTGTATTCA GAGGTGCAGAGTCGTGGAATGCAGCCTACTGAGTTCACATTCTCTAGTGTGTTACGGGCT TGCAACCTTGCTGGTTACCTTGAATTTGGAAAACAAATACATGGCCAAGTGATCAAGTAC ACTTTCCAGGAAGATGATTTCATCGGGAGTGCGCTTATTGACTTGTACTTCAACTCTGGC TGTATGGAAGATGGGTTTAGGTGCTTCAGATCCAGCCCCAAGCATGATATTGTTACCTGG ACAGCAATGGTTTCTGGGTGTGTTCAAAATGAACTTCATGAGAAGGCTCTGAGTTTGTTT CATGAATCTTTAGGTGCTGGATTGAAACCGGATCTTTTTACTATATCTAGTGTGATGAAT GCATGCGCAAGTTTAGCTGTTGCAAGGGCTGGTGAGCAGATCCAGTGCTTTGCCACGAAA TCTGGTTTTGACCGGTTCACTGTCATGGGGAACTCTTGCGTGCATATGTATGCTAGATCA GGGGATGTTGATGCTGCAACTCGGAGGTTTCAGGAAATGGAATCACACGATGTTGTCTCT TGGTCTGCAGTGATATCATGCCATGCACAGCATGGTTGTGCAAGGGATGCTTTACATTTT TTTGATGAAATGGTGGATGCAAAGGTGGTGCCAAATGAGATCACTTTTCTTGGTGTCCTT ACTGCCTGTAGCCATGGAGGATTGGTTGATGAGGGACTCAGGTATTATGAAACTATGACT AAGGATTATGGGTTGAGTCCAACCATAAAGCATTGCACTTGTGTTGTTGATCTCCTTGGA CGAGCTGGGAGACTAGCTGATGCTGAGGCTTTTATAAGCAATTCAATCTTCCATGCTGAC CCAGTCATTTGGCGGTCTTTGCTGGCCTCATGTCGAATTCATAGAGACCTGGAGAGAGGT CAACTTGTCGCGAATCGGATAATGGAACTAGAACCCACTTCGTCAGCGTCCTATGTAATT CTTTACAACATGTACCTGGATGCTGGGGAGCTCTCGTTGGCTTCAAAAACTAGGGATCTG ATGAAACAGCGAGGTGTGAAGAAAGAACCTGGCCTGAGTTGGATAGAACTGAAGTGTGGA GTTCACTCTTTTGTTGCTGGTGACAAGTCTCATCCAGAGAGCAGTGCAATATACACAAAA CTGGAAGAGATGCTTTCCAGGATCGAGAAGTTGGCGACCACTGATACTGAAATCTCTAAA AGGGAGCAAAATCTGATGAATTGCCATAGTGAAAAACTAGCTGTGGCATTAGGAATGATT CACTTGCCTCAGTCAGCACCTATAAGAGTAATGAAGAATCTGAGAGTTTGTCGTGATTGC CACTCAACAATGAAACTGATATCAAAGAGTGAAAACAGAGAGATCATATTGAGAGATCCA ATTCGCTTCCATCACTTTAGAGATGGTTCATGTTCTTGCGCTGATTATTGGTAGTG