Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0953500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:42000362:42002680:-1 gene:Os01g0953500 gene_biotype:protein_coding transcript_biotype:protein_coding description:C2 calcium-dependent membrane targeting domain containing protein. (Os01t0953500-01)
Sequence

ATGATGGAGTCGGCGAGGTTTGTGTACGAGCTGGATCATGGGGGAGAAGGCGAGGAGGAG
GAAGAGGAGGACGCCTGCTTCTTGGACATCTACGTGCACGGCGCGCGCGGCATCCACAAC
ATCTGCATCTACGCGGCGCAGGACGTGTACGCCAGGCTCGCGCTCACGTCCAGCCCGGAC
GACGCGCCGGCGCTCGACACGCGCGTCGCGGCGGGCGGCGGCGCCAACCCGCGCTTCGAC
GAGCGCCTCCCGCCGCTGCGCGTCAGGCGGGCGCGCCTCGGCACCGACGTGCTCAAGTGC
GAGATATGGATGCGGAGCTGCGCCAGGCGGCTGCTCGACGACCAGCTCCTCGGCTTCGCG
CTCGTGCCGCTCGCCGCCGTCGCGGCCGCCGACGGCGCGCGGCTCGCGCAGGACTTCTCG
CTGTCGTCCACCGACCTCTTCCACTCGCCGGCGGGGACCATACGGCTCTCGCTCGCCCTC
CACTCCGGACCACCCGGCGACGCGTGCCCGCCGCCGGAGCGCGCCGCCGCCGAGCCGTCG
ATCACGTCGGAGGTGGTGATCCTCGAGCCAGCGCCACCGGTGGACTACGCGAGGATCGAG
TTCCCTGACCTTAACGCGGTGAAAGAAAACGACGACATGGCCGTGCAGTACCTGCCGTTC
TTGCACCTCGCCGACGCGCAGGCCATGGACGACGACGACTGCGAGATGGCCACGAGCCCG
CGCGAGGAGAAGCCGGCGTCCTCGGACGACGGGAGCAAGAACGCCTCGACGTCGACGACC
ACCGCCGTCAGCGACGACAACAGGGCGGTGACGCGCAAGGCGCGGCCCGACGCCGACGAC
GCCGCCACCGCGCCGATGTCGTGCCGCTCGCCGGACACGCCGACGTCCAACGGCGGCAAG
CCGTCGTCGTCGGACAAGGAGAAGGGCGCCGCGGAAGACGTGTTCGACTCGCCGCCCCTG
CGCGATATCGACATGGAGGCGGAGCAGAGCGCGATGCAGCGGCAGATCATGGAGATGTAC
ATGAAGAGCATGCAGCAGTTCACCGAATCGCTGTCCAAGATGAAGCTGCCGATGGAGCTC
GACGGCGACAATGGCGTCGTCGTCCAGAAGGAGGAGAAGCCGGAGGCAGAGGTGAAGCTG
CAGCCCAAGAAGGATGGTGCAAGGGTGTTCTACGGAAGCAGAGCTTTCTTCTGA

Peptide Sequence

PEP ID

Os01t0953500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:42000362:42002680:-1 gene:Os01g0953500 transcript:Os01t0953500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:C2 calcium-dependent membrane targeting domain containing protein. (Os01t0953500-01)
Sequence

MMESARFVYELDHGGEGEEEEEEDACFLDIYVHGARGIHNICIYAAQDVYARLALTSSPD
DAPALDTRVAAGGGANPRFDERLPPLRVRRARLGTDVLKCEIWMRSCARRLLDDQLLGFA
LVPLAAVAAADGARLAQDFSLSSTDLFHSPAGTIRLSLALHSGPPGDACPPPERAAAEPS
ITSEVVILEPAPPVDYARIEFPDLNAVKENDDMAVQYLPFLHLADAQAMDDDDCEMATSP
REEKPASSDDGSKNASTSTTTAVSDDNRAVTRKARPDADDAATAPMSCRSPDTPTSNGGK
PSSSDKEKGAAEDVFDSPPLRDIDMEAEQSAMQRQIMEMYMKSMQQFTESLSKMKLPMEL
DGDNGVVVQKEEKPEAEVKLQPKKDGARVFYGSRAFF

Transcript Sequence

Transcript ID

Os01t0953500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:42000362:42002680:-1 gene:Os01g0953500 gene_biotype:protein_coding transcript_biotype:protein_coding description:C2 calcium-dependent membrane targeting domain containing protein. (Os01t0953500-01)
Sequence

ACTGCTGCTGTTCATGTTCTCATGTTGTAACTAACTGATTTGTACGTGAAGAGTCTGAAA
CTGTTGGATTTTGTTGGAAGGTAGTGGTGATCGATGATGGAGTCGGCGAGGTTTGTGTAC
GAGCTGGATCATGGGGGAGAAGGCGAGGAGGAGGAAGAGGAGGACGCCTGCTTCTTGGAC
ATCTACGTGCACGGCGCGCGCGGCATCCACAACATCTGCATCTACGCGGCGCAGGACGTG
TACGCCAGGCTCGCGCTCACGTCCAGCCCGGACGACGCGCCGGCGCTCGACACGCGCGTC
GCGGCGGGCGGCGGCGCCAACCCGCGCTTCGACGAGCGCCTCCCGCCGCTGCGCGTCAGG
CGGGCGCGCCTCGGCACCGACGTGCTCAAGTGCGAGATATGGATGCGGAGCTGCGCCAGG
CGGCTGCTCGACGACCAGCTCCTCGGCTTCGCGCTCGTGCCGCTCGCCGCCGTCGCGGCC
GCCGACGGCGCGCGGCTCGCGCAGGACTTCTCGCTGTCGTCCACCGACCTCTTCCACTCG
CCGGCGGGGACCATACGGCTCTCGCTCGCCCTCCACTCCGGACCACCCGGCGACGCGTGC
CCGCCGCCGGAGCGCGCCGCCGCCGAGCCGTCGATCACGTCGGAGGTGGTGATCCTCGAG
CCAGCGCCACCGGTGGACTACGCGAGGATCGAGTTCCCTGACCTTAACGCGGTGAAAGAA
AACGACGACATGGCCGTGCAGTACCTGCCGTTCTTGCACCTCGCCGACGCGCAGGCCATG
GACGACGACGACTGCGAGATGGCCACGAGCCCGCGCGAGGAGAAGCCGGCGTCCTCGGAC
GACGGGAGCAAGAACGCCTCGACGTCGACGACCACCGCCGTCAGCGACGACAACAGGGCG
GTGACGCGCAAGGCGCGGCCCGACGCCGACGACGCCGCCACCGCGCCGATGTCGTGCCGC
TCGCCGGACACGCCGACGTCCAACGGCGGCAAGCCGTCGTCGTCGGACAAGGAGAAGGGC
GCCGCGGAAGACGTGTTCGACTCGCCGCCCCTGCGCGATATCGACATGGAGGCGGAGCAG
AGCGCGATGCAGCGGCAGATCATGGAGATGTACATGAAGAGCATGCAGCAGTTCACCGAA
TCGCTGTCCAAGATGAAGCTGCCGATGGAGCTCGACGGCGACAATGGCGTCGTCGTCCAG
AAGGAGGAGAAGCCGGAGGCAGAGGTGAAGCTGCAGCCCAAGAAGGATGGTGCAAGGGTG
TTCTACGGAAGCAGAGCTTTCTTCTGAACAAAAAGCAAACAAAAAAAAATTGCAGAGAGA
AACAAATTAAGATGATCTCTTCTTGCAATTGCAAAAGTTATATCTCAGCAATTCAATGCC
ATGTACGAAGCAAAATGCCAAAGAACAAAACAGAAGTTAGTGGTTGCTGTTTCTACATCG
ACTTCAACGCGACTAACACCACGATCAGTTCTCCTGATTACAATGGACTGCCATGAACTT
TCATTGCAAATAGCTTCGAAATGCCAATGTACAAGTCCAACATTTCTGCCGGTCGTACAC
TTCAGTTCCTGAAGAAGCTGGGAGACAGTCTTCAGTCGTCACAAGAAATTTGGTACTTGT
GTAGTACTCTGTATGAACAATGACTTATTAGTATGAGATTTATTAAAGAAGACGAAAACT
TCAGAC