Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0952300-00
CDS Infomation	cds chromosome:IRGSP-1.0:1:41925865:41932899:-1 gene:Os01g0952300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ran GTPase binding / chromatin binding / zinc ion binding. (Os01t0952300-00)
Sequence	ATGTCGGACGCGTCGTCGGATCTCGCCGGCGGTCGGGCGGCCCCCCCCGTGGAGCGCGAC ATCGAGCAGGCTATCACCGCCCTTAAGAAAGGAGCTTACTTATTGAAGTATGGACGTAGG GGAAAACCAAAGTTCTGTCCATTTAGGTTATCCAATGACGAATCTGTACTGATATGGTTC TCAGGGAAAGAGGAGAAACATCTAAGGTTGAGCCAAGTGTCCAGGATAGTTCCTGGGCAA CGGACTGCAATTTTTCAGAGGTATCCACGACCTGAGAAGGAATGTCAGTCGTTTTCTCTG ATTTCACATGATAGATCATTGGACATCATTTGTAAAGATAAAGATGAGGCAGAAGTGTGG TTTGCTGGGCTGAAAACATTGATTTCACATAGCCATCAAAGAAAATGGAGAACAGAATCG AGAAGTGATATCATATCCTCTGGTGCAACTAGTCCAAGGACTTATACACGTCGGAGTTCT CCATTGAGTTCTCCCTTCAGTAGCAATGACAGTGTCCATAAGGATGGCAGTGATCATTAC CGACTCCGGAGTCCATTTGGGAGTCCACCAAAGAATGCATTGGATAAGGCCTTTTCTGAC GTTGTGTTATATGCAGTTCCTCCCAAGGGCTTCTTCCCATCAGATTCTAATGCCGGATCA GTCCACTCTATGTCGTCTGGACACTCAGATAACACAAATGGTCACCCAAGAGGCATCCCA ATGGATGCTTTTCGGGTCAGTTATTCAAGTGCTATCAGTTCGTCAAGTCATGGTTCAGGT CATGATGATGGGGATGCTTTAGGTGACGTTTTCATATGGGGAGAAGGAACTGGGGAAGGA ATTCTCGGTGGTGGTAGTTCAAGGGTTGGAAGCTCTTCTAGTGCAAAGATGGATTATCTT GTACCAAAACCATTAGAGTTCGCTGTGCGACTTGATGTGCAGAATATATCTTGTGGAGGA AGGCATGCTGCATTGGTCACTAAACAAGGGGAGATCTACTCTTGGGGTGAGGAATCAGGT GGCCGGCTTGGGCATGGTGTAGATTGTGATGTGGCACAACCAAAACTCATTGATTCTCTT GCTCACATGAACATAGAGCTGGTAGCATGCGGTGAATACCATACCTGTGCTGTTACACTA TCTGGAGATCTGTATACATGGGGGGATGGCACCTTTAAATTTGGGCTTTTGGGTCATGGA AATGATGTCAGTCACTGGGTACCAAAAAGGGTTGATGGGCCATTAGAGGGTATACATGTA TCATCAATTTCTTGTGGCCCTTGGCATACGGCCCTAGTAACTTCTGCTGGCCAGCTGTTC ACATTTGGAGATGGATCTTTTGGTGTTCTAGGGCATGGAGATCGTGCAAGTCTTTCAGTC CCCAGGGAAGTAGAATCCCTAAAAGGTCTACGAACGGTTCGGGCAGCTTGTGGTGTTTGG CACACTGCTGCTGTTGTAGAAGTCATGGTTGGGAATTCAAGTTCTAGCAATTGTTCATCT GGCAAGATATTTACTTGGGGTGATGGAGATAAAGGCCGTTTAGGACATGGTGACAAGGAC TCAAGATTTGTCCCAACATGTGTGGCTGCTTTGGTGGAGCCCAATTTTTGTCAAGTTGCT TGTGGGCATTGCTTGACAGTGGCTCTTACAACCTCAGGGCATGTATATACAATGGGTAGT GCTGTCTATGGTCAGCTTGGAAATCCACAAGCAGATGGTTTGCTTCCTGTACGTGTTGAA GGGAAGCTGCACAAAAACTTTGTAGAAGAAATTTCTTGTGGTGCTTATCATGTGGCTGTA TTGACATCCAGGACTGAGGTGTACACGTGGGGTAAAGGTGCAAATGGTCGGTTAGGTCAT GGTGGTACTGATGATAAGAATACTCCTACATTGGTTGAAGCATTGAAAGATAAGCAAGTC AGAAGTGTTGTGTGTGGAATTAACTTCACTGCAGCAATATGCATTCATAAATGGGTATCT GGAAGTGATCAGTCAATGTGCTCTGGATGCCGTCAGCCGTTTAACTTGAGGAGAAAACGT CATAATTGCTACAATTGTGCTCTAGTATTTTGTCATTCATGCAGCAGTAAAAAATCTTTG AAGGCTTCATTGGCGCCAAACCCGAACAAGCCTTACCGCGTCTGTGATAGTTGCTACAGC AAACTCACTAAGGGGCTTGAAACAGACACAAACTCCTCAACTAAGCGAGGCACTGTTGTA CAGGGATTCAGTGAAACTAATGAGGAGGAGCTGGAAACACGGTCAAATACCCAACTGTCG AGATTGTCTTCTATGGAATCTTTTAAGAACATGGACAGTAGATATTCGAAGAAAAACAAA AAGTTTGAATTCAACAGCACTCGTGTTTCCCCTGTTCCAAATGGCAGTTCACACTGGAGC GGGCTCAATATTTCAAGATCCTTCAATCCTGTATTTGGATCCTCAAAGAAGTTTTTTTCA GCATCTGTTCCTGGATCAAGAATTGTTTCTAGGGCAACATCACCTGTCTCAAGAAGAACA AGCCCTCCTAGATCGACAACCCCAACGCCTACTTTGGGTGGTCTAACTTCTCCTAGAGTT ATTGCCAATGATGCCAAGCCTACAAATGATAGTCTAAGCCACGAGGTCTTGAATTTGAGG TCCCAGGTGGAGAATCTTACTAGGAAGTCTCATCTTCTGGAAGTTGAGCTGGAGAGAACT ACGAAACAATTGAAGGAAGCAATTGTAATTGCTGGGGAGGAAACTGCCAAGTGCAAGGCT GCAAAAGAAGTAATCAAATCACTCACGGCACAAGTAAGATTGCATTTTTGTGAGCTTGCC GGAATGGCAGAGAGATTGCCTGGAGGAGTAACCAAGAATAGCAAACTGCCGCCCCTATCT GGATTTCCTATGCCAAGTGAGCTATCATCCATGGCTACAGAAAGTTTGGGTAGCCCAAGC AGTGTAGGAGAACAAATTTCAAATGGTCCTAATGGGCTGCTTGCTTCTAATGGACCAAGT TCTGTTAGAATCAAGGCAGGTCATCCAGAAGTTGGCAAAAATGGTAGTAGACTGCCTGAA GCAGAATCATGCCATGAGGCTGAATGGGTGGAGCAAGACGAACCAGGCGTTTACATCACT CTAACCGCCTTGCCTGGAGGTGCGAGAGATCTCAAGCGGGTTCGGTTCAGGTATATCCTG TTAATCCTGTGCAAGAATCAAAGTTTTGTTTGGTTCAGCTTTTCACTCTTGGTTTGTATG AATCCAGCCGGAAGAGATTCAGCGAGACCCAGGCAGAACAATGGTGGCAGGAGAACAGGA CAAGGGTATACCAGCATTACAATGTTCGGATGGTTGAAAAATCAGCCTCCAGTATCGATA ATGAGATTGCATCTCGGTGACATTAGATTTGACATTTGGACAAAAGGAGAGCTGAGATCC TTTACGATGTGA

Peptide Sequence

PEP ID	Os01t0952300-00
PEP Infomation	pep chromosome:IRGSP-1.0:1:41925865:41932899:-1 gene:Os01g0952300 transcript:Os01t0952300-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ran GTPase binding / chromatin binding / zinc ion binding. (Os01t0952300-00)
Sequence	MSDASSDLAGGRAAPPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWF SGKEEKHLRLSQVSRIVPGQRTAIFQRYPRPEKECQSFSLISHDRSLDIICKDKDEAEVW FAGLKTLISHSHQRKWRTESRSDIISSGATSPRTYTRRSSPLSSPFSSNDSVHKDGSDHY RLRSPFGSPPKNALDKAFSDVVLYAVPPKGFFPSDSNAGSVHSMSSGHSDNTNGHPRGIP MDAFRVSYSSAISSSSHGSGHDDGDALGDVFIWGEGTGEGILGGGSSRVGSSSSAKMDYL VPKPLEFAVRLDVQNISCGGRHAALVTKQGEIYSWGEESGGRLGHGVDCDVAQPKLIDSL AHMNIELVACGEYHTCAVTLSGDLYTWGDGTFKFGLLGHGNDVSHWVPKRVDGPLEGIHV SSISCGPWHTALVTSAGQLFTFGDGSFGVLGHGDRASLSVPREVESLKGLRTVRAACGVW HTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDSRFVPTCVAALVEPNFCQVA CGHCLTVALTTSGHVYTMGSAVYGQLGNPQADGLLPVRVEGKLHKNFVEEISCGAYHVAV LTSRTEVYTWGKGANGRLGHGGTDDKNTPTLVEALKDKQVRSVVCGINFTAAICIHKWVS GSDQSMCSGCRQPFNLRRKRHNCYNCALVFCHSCSSKKSLKASLAPNPNKPYRVCDSCYS KLTKGLETDTNSSTKRGTVVQGFSETNEEELETRSNTQLSRLSSMESFKNMDSRYSKKNK KFEFNSTRVSPVPNGSSHWSGLNISRSFNPVFGSSKKFFSASVPGSRIVSRATSPVSRRT SPPRSTTPTPTLGGLTSPRVIANDAKPTNDSLSHEVLNLRSQVENLTRKSHLLEVELERT TKQLKEAIVIAGEETAKCKAAKEVIKSLTAQVRLHFCELAGMAERLPGGVTKNSKLPPLS GFPMPSELSSMATESLGSPSSVGEQISNGPNGLLASNGPSSVRIKAGHPEVGKNGSRLPE AESCHEAEWVEQDEPGVYITLTALPGGARDLKRVRFRYILLILCKNQSFVWFSFSLLVCM NPAGRDSARPRQNNGGRRTGQGYTSITMFGWLKNQPPVSIMRLHLGDIRFDIWTKGELRS FTM

Transcript Sequence

Transcript ID	Os01t0952300-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:41925865:41932899:-1 gene:Os01g0952300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ran GTPase binding / chromatin binding / zinc ion binding. (Os01t0952300-00)
Sequence	AAGAAAAAAAAAGCATCACCCTCCCCCACTCTCTCCCTCTCCGTCTCCCTCCTCCGCGTC GCGATCTCTCTCTCTCTCCCTCCTCCACTCCCAAACCCCTCCTCCTCCGCCTCGAGCTCC GATCCGATCCCCCCCGCGGCAGCCGCCACCGCGGAAACCTCCGGTTGCGGCGAGCCACCT CCTCACGGACGGAGATACTCGCCGTCGGCGAGGCCCCCATTGGCGCTCGCGCCGCTGCCC GTGGTGGTGATTGCAGCGGCCATCAGGATAGAAGAGGCGCGCCGCTGCTGTGTAGAGGAG AAGGGCTGTGATGGTGTGGCGGCGGCGGCGGTGGCCGCGGGGTTGTTGATGCGCGCCGCG CGCGCCCATGTCGGACGCGTCGTCGGATCTCGCCGGCGGTCGGGCGGCCCCCCCCGTGGA GCGCGACATCGAGCAGGCTATCACCGCCCTTAAGAAAGGAGCTTACTTATTGAAGTATGG ACGTAGGGGAAAACCAAAGTTCTGTCCATTTAGGTTATCCAATGACGAATCTGTACTGAT ATGGTTCTCAGGGAAAGAGGAGAAACATCTAAGGTTGAGCCAAGTGTCCAGGATAGTTCC TGGGCAACGGACTGCAATTTTTCAGAGGTATCCACGACCTGAGAAGGAATGTCAGTCGTT TTCTCTGATTTCACATGATAGATCATTGGACATCATTTGTAAAGATAAAGATGAGGCAGA AGTGTGGTTTGCTGGGCTGAAAACATTGATTTCACATAGCCATCAAAGAAAATGGAGAAC AGAATCGAGAAGTGATATCATATCCTCTGGTGCAACTAGTCCAAGGACTTATACACGTCG GAGTTCTCCATTGAGTTCTCCCTTCAGTAGCAATGACAGTGTCCATAAGGATGGCAGTGA TCATTACCGACTCCGGAGTCCATTTGGGAGTCCACCAAAGAATGCATTGGATAAGGCCTT TTCTGACGTTGTGTTATATGCAGTTCCTCCCAAGGGCTTCTTCCCATCAGATTCTAATGC CGGATCAGTCCACTCTATGTCGTCTGGACACTCAGATAACACAAATGGTCACCCAAGAGG CATCCCAATGGATGCTTTTCGGGTCAGTTATTCAAGTGCTATCAGTTCGTCAAGTCATGG TTCAGGTCATGATGATGGGGATGCTTTAGGTGACGTTTTCATATGGGGAGAAGGAACTGG GGAAGGAATTCTCGGTGGTGGTAGTTCAAGGGTTGGAAGCTCTTCTAGTGCAAAGATGGA TTATCTTGTACCAAAACCATTAGAGTTCGCTGTGCGACTTGATGTGCAGAATATATCTTG TGGAGGAAGGCATGCTGCATTGGTCACTAAACAAGGGGAGATCTACTCTTGGGGTGAGGA ATCAGGTGGCCGGCTTGGGCATGGTGTAGATTGTGATGTGGCACAACCAAAACTCATTGA TTCTCTTGCTCACATGAACATAGAGCTGGTAGCATGCGGTGAATACCATACCTGTGCTGT TACACTATCTGGAGATCTGTATACATGGGGGGATGGCACCTTTAAATTTGGGCTTTTGGG TCATGGAAATGATGTCAGTCACTGGGTACCAAAAAGGGTTGATGGGCCATTAGAGGGTAT ACATGTATCATCAATTTCTTGTGGCCCTTGGCATACGGCCCTAGTAACTTCTGCTGGCCA GCTGTTCACATTTGGAGATGGATCTTTTGGTGTTCTAGGGCATGGAGATCGTGCAAGTCT TTCAGTCCCCAGGGAAGTAGAATCCCTAAAAGGTCTACGAACGGTTCGGGCAGCTTGTGG TGTTTGGCACACTGCTGCTGTTGTAGAAGTCATGGTTGGGAATTCAAGTTCTAGCAATTG TTCATCTGGCAAGATATTTACTTGGGGTGATGGAGATAAAGGCCGTTTAGGACATGGTGA CAAGGACTCAAGATTTGTCCCAACATGTGTGGCTGCTTTGGTGGAGCCCAATTTTTGTCA AGTTGCTTGTGGGCATTGCTTGACAGTGGCTCTTACAACCTCAGGGCATGTATATACAAT GGGTAGTGCTGTCTATGGTCAGCTTGGAAATCCACAAGCAGATGGTTTGCTTCCTGTACG TGTTGAAGGGAAGCTGCACAAAAACTTTGTAGAAGAAATTTCTTGTGGTGCTTATCATGT GGCTGTATTGACATCCAGGACTGAGGTGTACACGTGGGGTAAAGGTGCAAATGGTCGGTT AGGTCATGGTGGTACTGATGATAAGAATACTCCTACATTGGTTGAAGCATTGAAAGATAA GCAAGTCAGAAGTGTTGTGTGTGGAATTAACTTCACTGCAGCAATATGCATTCATAAATG GGTATCTGGAAGTGATCAGTCAATGTGCTCTGGATGCCGTCAGCCGTTTAACTTGAGGAG AAAACGTCATAATTGCTACAATTGTGCTCTAGTATTTTGTCATTCATGCAGCAGTAAAAA ATCTTTGAAGGCTTCATTGGCGCCAAACCCGAACAAGCCTTACCGCGTCTGTGATAGTTG CTACAGCAAACTCACTAAGGGGCTTGAAACAGACACAAACTCCTCAACTAAGCGAGGCAC TGTTGTACAGGGATTCAGTGAAACTAATGAGGAGGAGCTGGAAACACGGTCAAATACCCA ACTGTCGAGATTGTCTTCTATGGAATCTTTTAAGAACATGGACAGTAGATATTCGAAGAA AAACAAAAAGTTTGAATTCAACAGCACTCGTGTTTCCCCTGTTCCAAATGGCAGTTCACA CTGGAGCGGGCTCAATATTTCAAGATCCTTCAATCCTGTATTTGGATCCTCAAAGAAGTT TTTTTCAGCATCTGTTCCTGGATCAAGAATTGTTTCTAGGGCAACATCACCTGTCTCAAG AAGAACAAGCCCTCCTAGATCGACAACCCCAACGCCTACTTTGGGTGGTCTAACTTCTCC TAGAGTTATTGCCAATGATGCCAAGCCTACAAATGATAGTCTAAGCCACGAGGTCTTGAA TTTGAGGTCCCAGGTGGAGAATCTTACTAGGAAGTCTCATCTTCTGGAAGTTGAGCTGGA GAGAACTACGAAACAATTGAAGGAAGCAATTGTAATTGCTGGGGAGGAAACTGCCAAGTG CAAGGCTGCAAAAGAAGTAATCAAATCACTCACGGCACAAGTAAGATTGCATTTTTGTGA GCTTGCCGGAATGGCAGAGAGATTGCCTGGAGGAGTAACCAAGAATAGCAAACTGCCGCC CCTATCTGGATTTCCTATGCCAAGTGAGCTATCATCCATGGCTACAGAAAGTTTGGGTAG CCCAAGCAGTGTAGGAGAACAAATTTCAAATGGTCCTAATGGGCTGCTTGCTTCTAATGG ACCAAGTTCTGTTAGAATCAAGGCAGGTCATCCAGAAGTTGGCAAAAATGGTAGTAGACT GCCTGAAGCAGAATCATGCCATGAGGCTGAATGGGTGGAGCAAGACGAACCAGGCGTTTA CATCACTCTAACCGCCTTGCCTGGAGGTGCGAGAGATCTCAAGCGGGTTCGGTTCAGGTA TATCCTGTTAATCCTGTGCAAGAATCAAAGTTTTGTTTGGTTCAGCTTTTCACTCTTGGT TTGTATGAATCCAGCCGGAAGAGATTCAGCGAGACCCAGGCAGAACAATGGTGGCAGGAG AACAGGACAAGGGTATACCAGCATTACAATGTTCGGATGGTTGAAAAATCAGCCTCCAGT ATCGATAATGAGATTGCATCTCGGTGACATTAGATTTGACATTTGGACAAAAGGAGAGCT GAGATCCTTTACGATGTGA