Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0952200-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:41920981:41925302:1 gene:Os01g0952200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 58 description:DNA/RNA helicase, C-terminal domain containing protein. (Os01t0952200-01);Similar to chromatin remodeling complex subunit. (Os01t0952200-02)
Sequence	GAGGTACATCAGATACCATCTGTATTGAATAATGATAAGTCGTTTGACCTGCATGAAATC TTCAAAACTCTACCTAGTGTTATGGTGGAGAAGAGGATGCAGATAACAAGAATAACACCA GATGAGGCAGCATCGGGAGTGGGTATTTGGTCTGTCCCTGATGATGTCTTGTATAAGGTG CTGGTTCGACTGAAACCCAGAGATTTGATTAGAGTTGCAGCTGCTTGTCATCATCTAAGG AATCTTTCTGCTTCTATCATGCCTTGCATGAAACTTAAGCTTTTTCCTCATCAAGAGGCA GCTGTTGAATGGATGCTAAGGAGGGAGCAGAACTTGCAGGTCCTAGAACATCCTCTATAC AAGGGTTTGTGCACCATGGATGGTTTCCCTTATTACATAAATGTTACCTCTGGTGAAATA TCCACTGGTAGTGCTCCAACTGTACATGATTTTTGTGGAGGTATGTTTTGTGATGAACCT GGGTTAGGGAAGACAGTGACTGCACTGTCTCTTATTCTGAAGACACATGGGACTCTGGCA GTCCCTCCACCAGGGATGAATGTTATGTGGTGCATGCATAAACCAGATAAAAAATATGGA TACTACGAGCTTAGTGCTAGCAACTCTTCTAATGGAAACATCTTTTTGTCGGGATCAAAA AAGTTGCGAAAGGACGTGATTAGAGAAGATACATGTTCAAGTGAGTCACTGAATAATGGT GGTTCAGTTGTTAGTACAAGGTCATCAAGAAAGAGAGGCAGGTTAGTAAACCCTGATTTG AATATGATCGCTGCACATCCGAGTGGGAAGTCGCCAATGTCAGCACCAACTGGTGCTCAT TCAACTCCAGCTACTCATGTGCTAAAGATTACCAAAAACTTGAAACATGTTAGGAAAAAC CTCATGGAGGCATATAGCGATGGTTCAGTTGGCAATAAAAGGAAGAGAGATGCCACCTCT GAGTTAAGTGAAACCTGGGTTCAATGCGATGCTTGCAGAAAGTGGCGGAGATTATTGGAC GGAACTGCACTTGATTCCAGTACAGCATGGTTTTGCAGCATGAACCCTGATTCTGCACGT CAGAAGTGCAGCATCCCAGAGGAATCTTGGGATTTAAAGCGAAAGATAACTTATTTGCCC GGATTTCACAAGAAAGGTACACCACCAGGAAACGAGCAAAATGCATCTTTTTTTACAAAC ATATTGAAAGAGCATGCTGCTTTGATCGATTCAGAAACCATGAAGGCTTTGTTGTGGTTG GCGAAACTTTCTCCCAAGAAACATATCGAGATGGAAGCAGTTGGTTTGACACGGCCAGTT CTAGATGCACGTGCTAACATAGGAAAGGGTGCCCGCCCGTATTACAAGATTTTTCAAGCA TTTGGCCTTGTGAGGAAGGTTGAGAAAGGCATAACTCGATGGTATTATCCATCTATGCTT GATGATTTGGCATTTGATTCGGCTGCACTTGGAATTGCCCTTGAAAAGCCGCTGGATTTG GTGAGGCTTTATTTGTCTAGGGCAACCTTGATAGTGGTACCTGCTAACTTAATTGATCAC TGGACAACACAGATACAGCGGCATGTTTCCTCGGACACACTTAATGTTTATGTATGGGGA GATCACAAGAAACCATCTGCTCACAACCTTGCATGGGACTATGACATTGTCATAACCACA TTTAGTAGATTAAGTGCAGAATGGGGTCCAAAGAAGAGAAGTGTTTTAAAGCAGATCCAT TGGTTTAGGGTAATATTAGATGAAGGACACACATTAGGTTCCAGTCTCGCCCTCACAAAC AAATTGCAGATGGCTGTTTCATTGGTTGCTTCTAATAGATGGATTCTAACTGGTACCCCT ACGCCAAACACACCAACTAGTCAAGTTGCTCACCTTCATCCCATGCTTAAGTTTCTTCAT GAGGAAGTTTACGGTCAAAACTACCAGTCATGGGACACTGGAATTCATAGGCCTTTTGAG GCACAAATGGAAGACGGACGCAGTCGTCTCCTGCAGCTACTTCAGAGGACTATGATTAGT GCAAGGAAACAAGACCTGAAAAACATTCCTCCTTGCATAAAAAAGATAACTTTCCTGGAC TTCAGTGAGGGGCATGCGAAAAGTTACAATGAACTGGCTGTTACTATCCGCAGAAATATA TTGATGGCTGATTGGAATGACCCTTCTCACGTGGAATCACTTCTGAACCCCAAGCAATGG AAATTCCGTACTACAACTATTAAGAATGTGCGCTTGTCTTGTTGTGTTGCGGGGCATATC AAAGTAGCAGAGGCTGGTCAAGATATACAGGAAACAATGGATGCATTAATGCAGCTGGGC CTTGATCCTTCTTCGGGGGAGTATCAGTCCATAAGATATGCTCTTTTAAATGGTGCCAGC TGTTTCAGGTGCAGAGATTGGTGCCGCTTGCCTGTTGTCACGCCCTGTCGGCATCTGTTG TGCCTTGATTGTGTAGCTCTTGATAGTGAGAAATGCACGTTACCTGGCTGTGGCAACCAT TATGAGATGCAGACTCCTGAAACTCGTGCACGGCCAGAAAATCCAAACCCAAAATGGCCA GTGCCCAAAGACCTAATTGAGTTGCAGCCTTCATATAAGCAGGATGACTGGGATCCAGAC TGGCAGTCGACAACAAGCAGCAAAGTTGCTTATTTGGTTAATAAGTTGAGAAGTTTGAAG GCAGAAAACATAAAACATGGGTACTCTAGGAACATGGCCAATGGTGCTTGCCTTTCTAGT CAATCTTCTTGTCAAGACCATAATAATGTGGAGGGCAGGTTACCACACACAATGCCTGAC AAAGTAATAATATTCTCTCAGTTTCTGGAGCATATCCATGTGATTGAGCAGCAGCTGACG ATTGGGGGCATAACATATGCTGGAATGTACAGTCCCATGCCATTAGGCAGTAAGAGAAGT TCACTGACGAAGTTCAAAGATGATCCAGCATGCATGGCCTTAGTCATGGATGGAACTGCA GCACTGGGCCTTGATTTGAGTTTTGTCTCTTATGTTTTTCTGATGGAACCAATATGGGAT AGGAGTATGGAGGAGCAAGTTATTAGTCGTGCACATCGTATGGGTGCTACTCGTCCCATA TTTGTTGAGACTTTGGCCATGCGTGGTACCATCGAAGAGCAAATGTTAAAACTTTTACAG GATTCCAATGCTTGCAGACAAATGGTGAATAAAGGAACAAGCAGCACTGATAATGAAGGT GCTCGGCCTCACCGGAGCCTGCATGATTTTGCGGAAAGCAGTTATCTGGCGCAACTCAGC TTTGTGAAAGGATCTGACGCGGCGGAAAAATTATAG

Peptide Sequence

PEP ID	Os01t0952200-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:41920981:41925302:1 gene:Os01g0952200 transcript:Os01t0952200-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 58 description:DNA/RNA helicase, C-terminal domain containing protein. (Os01t0952200-01);Similar to chromatin remodeling complex subunit. (Os01t0952200-02)
Sequence	EVHQIPSVLNNDKSFDLHEIFKTLPSVMVEKRMQITRITPDEAASGVGIWSVPDDVLYKV LVRLKPRDLIRVAAACHHLRNLSASIMPCMKLKLFPHQEAAVEWMLRREQNLQVLEHPLY KGLCTMDGFPYYINVTSGEISTGSAPTVHDFCGGMFCDEPGLGKTVTALSLILKTHGTLA VPPPGMNVMWCMHKPDKKYGYYELSASNSSNGNIFLSGSKKLRKDVIREDTCSSESLNNG GSVVSTRSSRKRGRLVNPDLNMIAAHPSGKSPMSAPTGAHSTPATHVLKITKNLKHVRKN LMEAYSDGSVGNKRKRDATSELSETWVQCDACRKWRRLLDGTALDSSTAWFCSMNPDSAR QKCSIPEESWDLKRKITYLPGFHKKGTPPGNEQNASFFTNILKEHAALIDSETMKALLWL AKLSPKKHIEMEAVGLTRPVLDARANIGKGARPYYKIFQAFGLVRKVEKGITRWYYPSML DDLAFDSAALGIALEKPLDLVRLYLSRATLIVVPANLIDHWTTQIQRHVSSDTLNVYVWG DHKKPSAHNLAWDYDIVITTFSRLSAEWGPKKRSVLKQIHWFRVILDEGHTLGSSLALTN KLQMAVSLVASNRWILTGTPTPNTPTSQVAHLHPMLKFLHEEVYGQNYQSWDTGIHRPFE AQMEDGRSRLLQLLQRTMISARKQDLKNIPPCIKKITFLDFSEGHAKSYNELAVTIRRNI LMADWNDPSHVESLLNPKQWKFRTTTIKNVRLSCCVAGHIKVAEAGQDIQETMDALMQLG LDPSSGEYQSIRYALLNGASCFRCRDWCRLPVVTPCRHLLCLDCVALDSEKCTLPGCGNH YEMQTPETRARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTTSSKVAYLVNKLRSLK AENIKHGYSRNMANGACLSSQSSCQDHNNVEGRLPHTMPDKVIIFSQFLEHIHVIEQQLT IGGITYAGMYSPMPLGSKRSSLTKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWD RSMEEQVISRAHRMGATRPIFVETLAMRGTIEEQMLKLLQDSNACRQMVNKGTSSTDNEG ARPHRSLHDFAESSYLAQLSFVKGSDAAEKL

Transcript Sequence

Transcript ID	Os01t0952200-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:41920981:41925302:1 gene:Os01g0952200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 58 description:DNA/RNA helicase, C-terminal domain containing protein. (Os01t0952200-01);Similar to chromatin remodeling complex subunit. (Os01t0952200-02)
Sequence	TGAGGTACATCAGATACCATCTGTATTGAATAATGATAAGTCGTTTGACCTGCATGAAAT CTTCAAAACTCTACCTAGTGTTATGGTGGAGAAGAGGATGCAGATAACAAGAATAACACC AGATGAGGCAGCATCGGGAGTGGGTATTTGGTCTGTCCCTGATGATGTCTTGTATAAGGT GCTGGTTCGACTGAAACCCAGAGATTTGATTAGAGTTGCAGCTGCTTGTCATCATCTAAG GAATCTTTCTGCTTCTATCATGCCTTGCATGAAACTTAAGCTTTTTCCTCATCAAGAGGC AGCTGTTGAATGGATGCTAAGGAGGGAGCAGAACTTGCAGGTCCTAGAACATCCTCTATA CAAGGGTTTGTGCACCATGGATGGTTTCCCTTATTACATAAATGTTACCTCTGGTGAAAT ATCCACTGGTAGTGCTCCAACTGTACATGATTTTTGTGGAGGTATGTTTTGTGATGAACC TGGGTTAGGGAAGACAGTGACTGCACTGTCTCTTATTCTGAAGACACATGGGACTCTGGC AGTCCCTCCACCAGGGATGAATGTTATGTGGTGCATGCATAAACCAGATAAAAAATATGG ATACTACGAGCTTAGTGCTAGCAACTCTTCTAATGGAAACATCTTTTTGTCGGGATCAAA AAAGTTGCGAAAGGACGTGATTAGAGAAGATACATGTTCAAGTGAGTCACTGAATAATGG TGGTTCAGTTGTTAGTACAAGGTCATCAAGAAAGAGAGGCAGGTTAGTAAACCCTGATTT GAATATGATCGCTGCACATCCGAGTGGGAAGTCGCCAATGTCAGCACCAACTGGTGCTCA TTCAACTCCAGCTACTCATGTGCTAAAGATTACCAAAAACTTGAAACATGTTAGGAAAAA CCTCATGGAGGCATATAGCGATGGTTCAGTTGGCAATAAAAGGAAGAGAGATGCCACCTC TGAGTTAAGTGAAACCTGGGTTCAATGCGATGCTTGCAGAAAGTGGCGGAGATTATTGGA CGGAACTGCACTTGATTCCAGTACAGCATGGTTTTGCAGCATGAACCCTGATTCTGCACG TCAGAAGTGCAGCATCCCAGAGGAATCTTGGGATTTAAAGCGAAAGATAACTTATTTGCC CGGATTTCACAAGAAAGGTACACCACCAGGAAACGAGCAAAATGCATCTTTTTTTACAAA CATATTGAAAGAGCATGCTGCTTTGATCGATTCAGAAACCATGAAGGCTTTGTTGTGGTT GGCGAAACTTTCTCCCAAGAAACATATCGAGATGGAAGCAGTTGGTTTGACACGGCCAGT TCTAGATGCACGTGCTAACATAGGAAAGGGTGCCCGCCCGTATTACAAGATTTTTCAAGC ATTTGGCCTTGTGAGGAAGGTTGAGAAAGGCATAACTCGATGGTATTATCCATCTATGCT TGATGATTTGGCATTTGATTCGGCTGCACTTGGAATTGCCCTTGAAAAGCCGCTGGATTT GGTGAGGCTTTATTTGTCTAGGGCAACCTTGATAGTGGTACCTGCTAACTTAATTGATCA CTGGACAACACAGATACAGCGGCATGTTTCCTCGGACACACTTAATGTTTATGTATGGGG AGATCACAAGAAACCATCTGCTCACAACCTTGCATGGGACTATGACATTGTCATAACCAC ATTTAGTAGATTAAGTGCAGAATGGGGTCCAAAGAAGAGAAGTGTTTTAAAGCAGATCCA TTGGTTTAGGGTAATATTAGATGAAGGACACACATTAGGTTCCAGTCTCGCCCTCACAAA CAAATTGCAGATGGCTGTTTCATTGGTTGCTTCTAATAGATGGATTCTAACTGGTACCCC TACGCCAAACACACCAACTAGTCAAGTTGCTCACCTTCATCCCATGCTTAAGTTTCTTCA TGAGGAAGTTTACGGTCAAAACTACCAGTCATGGGACACTGGAATTCATAGGCCTTTTGA GGCACAAATGGAAGACGGACGCAGTCGTCTCCTGCAGCTACTTCAGAGGACTATGATTAG TGCAAGGAAACAAGACCTGAAAAACATTCCTCCTTGCATAAAAAAGATAACTTTCCTGGA CTTCAGTGAGGGGCATGCGAAAAGTTACAATGAACTGGCTGTTACTATCCGCAGAAATAT ATTGATGGCTGATTGGAATGACCCTTCTCACGTGGAATCACTTCTGAACCCCAAGCAATG GAAATTCCGTACTACAACTATTAAGAATGTGCGCTTGTCTTGTTGTGTTGCGGGGCATAT CAAAGTAGCAGAGGCTGGTCAAGATATACAGGAAACAATGGATGCATTAATGCAGCTGGG CCTTGATCCTTCTTCGGGGGAGTATCAGTCCATAAGATATGCTCTTTTAAATGGTGCCAG CTGTTTCAGGTGCAGAGATTGGTGCCGCTTGCCTGTTGTCACGCCCTGTCGGCATCTGTT GTGCCTTGATTGTGTAGCTCTTGATAGTGAGAAATGCACGTTACCTGGCTGTGGCAACCA TTATGAGATGCAGACTCCTGAAACTCGTGCACGGCCAGAAAATCCAAACCCAAAATGGCC AGTGCCCAAAGACCTAATTGAGTTGCAGCCTTCATATAAGCAGGATGACTGGGATCCAGA CTGGCAGTCGACAACAAGCAGCAAAGTTGCTTATTTGGTTAATAAGTTGAGAAGTTTGAA GGCAGAAAACATAAAACATGGGTACTCTAGGAACATGGCCAATGGTGCTTGCCTTTCTAG TCAATCTTCTTGTCAAGACCATAATAATGTGGAGGGCAGGTTACCACACACAATGCCTGA CAAAGTAATAATATTCTCTCAGTTTCTGGAGCATATCCATGTGATTGAGCAGCAGCTGAC GATTGGGGGCATAACATATGCTGGAATGTACAGTCCCATGCCATTAGGCAGTAAGAGAAG TTCACTGACGAAGTTCAAAGATGATCCAGCATGCATGGCCTTAGTCATGGATGGAACTGC AGCACTGGGCCTTGATTTGAGTTTTGTCTCTTATGTTTTTCTGATGGAACCAATATGGGA TAGGAGTATGGAGGAGCAAGTTATTAGTCGTGCACATCGTATGGGTGCTACTCGTCCCAT ATTTGTTGAGACTTTGGCCATGCGTGGTACCATCGAAGAGCAAATGTTAAAACTTTTACA GGATTCCAATGCTTGCAGACAAATGGTGAATAAAGGAACAAGCAGCACTGATAATGAAGG TGCTCGGCCTCACCGGAGCCTGCATGATTTTGCGGAAAGCAGTTATCTGGCGCAACTCAG CTTTGTGAAAGGATCTGACGCGGCGGAAAAATTATAGTTGCTAACACTAACAAAAATTTC TTTCTTGATTACCTCTGTTTCCTTCAATATTGAGGCCCTTCAATTCTTTTGATATAGAAA TGAGTCCTTTTGTTTCCTGCCTTTTTTTGTTTTATTTTTATGGGGAGCTTATCGTGGCCG ATCCGGGCTGTAATGTAGCTCGGGCTCGTTTGGAGTTGCCTGCTGCCTTGTGGGATGACG CCACGTCGCCCGGTCCATTGCCGGTCAGAACTGAAGGGCAGGCAAGGCTATTCCAAGGCT CTGATTATAAAAACAGCCGGTGAGAATTTAGAAAAGTCAAGTTTCTTAGCTTGTTTCTGG TTTAATGTTTGATTGTGAATAGGGTGGGTGAAAATTTGAACCGTTTGAGGGAGCTAGTGA GAATTTAAAAAAAGACGAGCTTCATATCTTCTTGCTTCC