Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0949300-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:41818382:41819282:1 gene:Os01g0949300 gene_biotype:protein_coding transcript_biotype:protein_coding description:EF-Hand type domain containing protein. (Os01t0949300-01)
Sequence

ATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACG
TGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGC
GTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCG
GAGTCGTCCTCGGACGACGCGCTGATGGCGAGGTCGACACCGAGGTCGGTGCTCCCCGCG
GAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGAC
GACGAGGAGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGCGGGGAG
GACGAGCTGATGGAGGCGTTCAAGGTGTTCGACGCCGACGGCGACGGCCGCATCACCGCC
GAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTC
GACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTC
CAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGC
CCGAGATCGTGGTGA

Peptide Sequence

PEP ID

Os01t0949300-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:41818382:41819282:1 gene:Os01g0949300 transcript:Os01t0949300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:EF-Hand type domain containing protein. (Os01t0949300-01)
Sequence

MKLSIQSFARKLSLPSPKRTWSSGGGSSKRDGGMSKNGSGVKRAISRSEASSFASASSES
ESSSDDALMARSTPRSVLPAEISRRELEAVLRRLGHGEPDDEELDAVAAIAAEAEAGGGE
DELMEAFKVFDADGDGRITAEELRGVMVAILGGDGDGCSLDDCRRMIGGVDADGDGFVGF
QDFARMMMAATATATATADGPRSW

Transcript Sequence

Transcript ID

Os01t0949300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:41818382:41819282:1 gene:Os01g0949300 gene_biotype:protein_coding transcript_biotype:protein_coding description:EF-Hand type domain containing protein. (Os01t0949300-01)
Sequence

TTCCTCCTCATCTCATCAACCTCTCCAAATCTCTCGATCTCCCATTCGAGCGAGATGAAG
CTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGC
AGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAG
CGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCG
TCCTCGGACGACGCGCTGATGGCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATC
TCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAG
GAGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGCGGGGAGGACGAG
CTGATGGAGGCGTTCAAGGTGTTCGACGCCGACGGCGACGGCCGCATCACCGCCGAGGAG
CTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGAC
TGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGAC
TTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGA
TCGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGA
TGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAGCCAGCACTAC
TAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATTA
GCCTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTT
C