Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0948500-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:41722524:41726196:-1 gene:Os01g0948500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os01t0948500-01)
Sequence	ATGCCGAGAACGGCGGCGGGGGTGGACGTGGAGGACCTCCTCGTCCGCGTCAAGAACGGC GCCGACGCCGAGCTCGCCGAGGTGGCGCGGGAGGTGGCGGCGCTCGCGGAGCAGGGGAGG CTCGGGGAGGACGACGACGAGGACGGGGTCCTGGTGCCGGCGCTGCTCGCGCGGCTCGCC GCCGCCGGGGGCGCGGAGGCCAGGGTCCGCGTCATGGCCGCGCTGCGGCGGCTCGCGCGC TGCGTTGGCTGCGAGAGCAAGGAGAGGTTAGCAAGCATCGAGGCACTTTCAAGCATTGTT CGTTCCTTGTCTAGAGATGTTGACGAGACAAGGGAAGCAATTGCATTGCTATTGGATTTG TCAGACATCCCGCAAGTTCGGCAGAGGATTGGCAGGATTAAAGGCAGTATAGTAATGCTA GTCACATTAAGAAATGCACATGAACCAGGTACCCATGATGATGCAGAGAAATTGCTGCAC ATGTTGTCATCCAATCCGCAAAATGTGCTCCTGATGGCCGAGGCTGGTTATTTTCGACCA TTGATACATTACCTGAAAGAAGGTTCTGATATGAACAAGATCCTAATGGCAACTGCTATT TCTAAAATGTTCCTCTCTGAGCCGATGAAATCTTCCCTTGGAGAAGATGGTGCAGTTGAG CCTCTAGTGGAAATGTTTAAATCCGGAAATCTTGAAGCCAAGCACTCGGCCCTAGGTGCC TTACTTAATCTCTCTAGCTCTCTACAAAATGCAGAAATTTTGATAAATTCTGGCATAACA GGACCACTGCTCCAACTTCTATTCTCTGTCACGTCAGTGTTAATGACCCTTAGAGAGCCA GCCTCAGCTATACTTGCAGCTATTGCACAATCTGAGCGTATCCTGCTTCATAAGGATGTA GCTCCTCAAATGCTCTCGCTTCTTAACTTATCGAGTCCAGTAATTCAACTTCACCTCCTA AGGGCCCTAAATAGTATTTCTGGGCACACAAATGCTAAAAGAGCTAGAGCTAAAATTAGA CAAAATGGTGGAGTGCAACTCCTCCTGCCCTTCCTGACAGAAAAGAATATTGATATCAAA ATTGCTGCTTTGAATTTTATTTCCAATCTGTCAAAAGATGCTTCACAGGAATTAGCTGAG CAGATTAGGGATACCCACCTTAATATTTTCGTGAAGATTATCTCTTCACCTACATCTGGA AATGAGAAGGCTGCAGCTATTGGTATCCTAAGCAACCTCCCAGTGACAGACAAGAAGATT ACTGAGTTACTCACTGAAGCAAACTTGCTTCCTCTCCTGATATCCTTACTTGAGATAAAC ATCACAGCGCCATTGACACCATTGAGAACGTCTTTACTTGAGGGCATTGCTGGCGTGTTA ATTCGGTTCACAGTCCCTTGGGATAAAAAATTACAAAGTTTAGCAGTTGGACATGGGGTG GTTCCTTGCCTTGTTAAGTTGCTTTCGGAAGGATCAATAAAAGCCAAGTCTAAAGCAGCA ACATCCTTGGCTCAACTGTCACAGAATTCACTAGCATTACGTAAGACAAAATTGCCAAGG TGGCTTTGTGTTGCCCCATCAGCTGAAACTTACTGTTTAGTTCACAACTCCCAGTGCACT GTCAAAAGCACTTTCTGCTTAGTGAAAGCTGGTGCTGTCAGTCCTCTGATCCAAATCTTA GAAGATGACAATCGTGAAGCAGATGGTGCAGTATTGGAAGCACTAGCTACCCTTATGCAG GATGAGATTTGGGAAAACGGGAGCAAGGTGATAGAAAAGGCATCAGGTGTTCATGCTCTG CTGAGAATTGCTGAGGCAGGAAACTCAACTTCCCAGGAGAAGGCGATATGGATGCTTGAG AGGATCTTCCGGCTTGAAGCCCACAGAGAGCGTTATGGTGAAATCGCACAAGCTTTGCTC ATTGATCTTGCTCAGAAAGGAGATCCTATCCTGAAACCAATGATTGGAAAGATACTTGCT CACCTTGAGCTACTTCAAACACAATCGAGCTACTTTTAA

Peptide Sequence

PEP ID	Os01t0948500-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:41722524:41726196:-1 gene:Os01g0948500 transcript:Os01t0948500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os01t0948500-01)
Sequence	MPRTAAGVDVEDLLVRVKNGADAELAEVAREVAALAEQGRLGEDDDEDGVLVPALLARLA AAGGAEARVRVMAALRRLARCVGCESKERLASIEALSSIVRSLSRDVDETREAIALLLDL SDIPQVRQRIGRIKGSIVMLVTLRNAHEPGTHDDAEKLLHMLSSNPQNVLLMAEAGYFRP LIHYLKEGSDMNKILMATAISKMFLSEPMKSSLGEDGAVEPLVEMFKSGNLEAKHSALGA LLNLSSSLQNAEILINSGITGPLLQLLFSVTSVLMTLREPASAILAAIAQSERILLHKDV APQMLSLLNLSSPVIQLHLLRALNSISGHTNAKRARAKIRQNGGVQLLLPFLTEKNIDIK IAALNFISNLSKDASQELAEQIRDTHLNIFVKIISSPTSGNEKAAAIGILSNLPVTDKKI TELLTEANLLPLLISLLEINITAPLTPLRTSLLEGIAGVLIRFTVPWDKKLQSLAVGHGV VPCLVKLLSEGSIKAKSKAATSLAQLSQNSLALRKTKLPRWLCVAPSAETYCLVHNSQCT VKSTFCLVKAGAVSPLIQILEDDNREADGAVLEALATLMQDEIWENGSKVIEKASGVHAL LRIAEAGNSTSQEKAIWMLERIFRLEAHRERYGEIAQALLIDLAQKGDPILKPMIGKILA HLELLQTQSSYF

Transcript Sequence

Transcript ID	Os01t0948500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:41722524:41726196:-1 gene:Os01g0948500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os01t0948500-01)
Sequence	CTCGGGCCGCGTCTCCATGGTCGACTTGACCTCTTCTTCCTCTTCCTCCTCCTCCTCCGC TTACTCCAATCCTTCTCTCCTCCCGCGACGCCGCTGCCCACTCACCATAGCCCCGACCTC CGCAGCCACCTGACGCGCGCTCGCTCGCTTCTTGGTGGTGTTCGGTTTGGCGCTGCTGCT GCTGCTATGCCGAGAACGGCGGCGGGGGTGGACGTGGAGGACCTCCTCGTCCGCGTCAAG AACGGCGCCGACGCCGAGCTCGCCGAGGTGGCGCGGGAGGTGGCGGCGCTCGCGGAGCAG GGGAGGCTCGGGGAGGACGACGACGAGGACGGGGTCCTGGTGCCGGCGCTGCTCGCGCGG CTCGCCGCCGCCGGGGGCGCGGAGGCCAGGGTCCGCGTCATGGCCGCGCTGCGGCGGCTC GCGCGCTGCGTTGGCTGCGAGAGCAAGGAGAGGTTAGCAAGCATCGAGGCACTTTCAAGC ATTGTTCGTTCCTTGTCTAGAGATGTTGACGAGACAAGGGAAGCAATTGCATTGCTATTG GATTTGTCAGACATCCCGCAAGTTCGGCAGAGGATTGGCAGGATTAAAGGCAGTATAGTA ATGCTAGTCACATTAAGAAATGCACATGAACCAGGTACCCATGATGATGCAGAGAAATTG CTGCACATGTTGTCATCCAATCCGCAAAATGTGCTCCTGATGGCCGAGGCTGGTTATTTT CGACCATTGATACATTACCTGAAAGAAGGTTCTGATATGAACAAGATCCTAATGGCAACT GCTATTTCTAAAATGTTCCTCTCTGAGCCGATGAAATCTTCCCTTGGAGAAGATGGTGCA GTTGAGCCTCTAGTGGAAATGTTTAAATCCGGAAATCTTGAAGCCAAGCACTCGGCCCTA GGTGCCTTACTTAATCTCTCTAGCTCTCTACAAAATGCAGAAATTTTGATAAATTCTGGC ATAACAGGACCACTGCTCCAACTTCTATTCTCTGTCACGTCAGTGTTAATGACCCTTAGA GAGCCAGCCTCAGCTATACTTGCAGCTATTGCACAATCTGAGCGTATCCTGCTTCATAAG GATGTAGCTCCTCAAATGCTCTCGCTTCTTAACTTATCGAGTCCAGTAATTCAACTTCAC CTCCTAAGGGCCCTAAATAGTATTTCTGGGCACACAAATGCTAAAAGAGCTAGAGCTAAA ATTAGACAAAATGGTGGAGTGCAACTCCTCCTGCCCTTCCTGACAGAAAAGAATATTGAT ATCAAAATTGCTGCTTTGAATTTTATTTCCAATCTGTCAAAAGATGCTTCACAGGAATTA GCTGAGCAGATTAGGGATACCCACCTTAATATTTTCGTGAAGATTATCTCTTCACCTACA TCTGGAAATGAGAAGGCTGCAGCTATTGGTATCCTAAGCAACCTCCCAGTGACAGACAAG AAGATTACTGAGTTACTCACTGAAGCAAACTTGCTTCCTCTCCTGATATCCTTACTTGAG ATAAACATCACAGCGCCATTGACACCATTGAGAACGTCTTTACTTGAGGGCATTGCTGGC GTGTTAATTCGGTTCACAGTCCCTTGGGATAAAAAATTACAAAGTTTAGCAGTTGGACAT GGGGTGGTTCCTTGCCTTGTTAAGTTGCTTTCGGAAGGATCAATAAAAGCCAAGTCTAAA GCAGCAACATCCTTGGCTCAACTGTCACAGAATTCACTAGCATTACGTAAGACAAAATTG CCAAGGTGGCTTTGTGTTGCCCCATCAGCTGAAACTTACTGTTTAGTTCACAACTCCCAG TGCACTGTCAAAAGCACTTTCTGCTTAGTGAAAGCTGGTGCTGTCAGTCCTCTGATCCAA ATCTTAGAAGATGACAATCGTGAAGCAGATGGTGCAGTATTGGAAGCACTAGCTACCCTT ATGCAGGATGAGATTTGGGAAAACGGGAGCAAGGTGATAGAAAAGGCATCAGGTGTTCAT GCTCTGCTGAGAATTGCTGAGGCAGGAAACTCAACTTCCCAGGAGAAGGCGATATGGATG CTTGAGAGGATCTTCCGGCTTGAAGCCCACAGAGAGCGTTATGGTGAAATCGCACAAGCT TTGCTCATTGATCTTGCTCAGAAAGGAGATCCTATCCTGAAACCAATGATTGGAAAGATA CTTGCTCACCTTGAGCTACTTCAAACACAATCGAGCTACTTTTAAGCATGTTTGGGGTGC AACTGTCCATGCTGAAACTAGCAAAATGGCATGTGTAACTGGCCTTTTGCAAGTTATGCT GCGCAATGCATGTTGAGCATACGCTTGAATGATGTCTGATCCAGGTTTGCCAGGCAGTGA TCTTCTCCACCAAATGTTACTGTGGACCAATTTGAAGAATGTTTCAACTGTGACATTGTA CCTCCGGAAGAAGTGATTTTGTGGGGTTACAGACTTCCAGTTGTGGCTGTACAAATAGCA ATCTAGCAGAGCAAAGGGTGATTGTGCATCGTGGACAGCAATCTTGTGTTGGTCTGTCAT TTTTGTTAGTTCGTGGATTATATAGTGTTTAAAGGAGATAGATTGCAAGTTGTATAGTTA GTCATGTGCCATTTCTTCTTTTGTGTATAAAATGGTGATATGAATC