Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0945800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:41573942:41578783:-1 gene:Os01g0945800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os01t0945800-01)
Sequence

ATGGCCACAAAACTTGTGGTTCTTGGAATCCCATGGGATGTGGACACTGAAGGATTAAGA
GAGTACATGGGCAAGTTTGGACCCCTAGATGATTGCGTCGTCATGAAGGAGCGTTCGTCT
GGTCGATCTCGTGGGTTTGGTTATGTAACGTTCTCATCAGCTGATGATGCCAAGAATGTT
CTTGAGTGTGAGCATGTTCTCGGAAACCGAACTCTAGAAGTGAAGATAGCCACTCCTAAG
GAAGAAATGAAATCACAGGGATCAAAAAAGGCTACTAGAATATTTGTTGCTCGAATTCCG
CAGTCCGTGGATGAGTCCATGTTTCGTAGGCATTTTGAAGCCTATGGAGAAATCACTGAT
CTTTACATGCCAAAGGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTT
CAGAGTGCAGAATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACA
GTAGTTGTTGACCGCGCCACTCCTAAGGATGAAGAAGTCAGATATCCTCCAAGCAGGGGG
GCATCTCAGGGTGGCTATGGTGCATATAATGCATACATTTCAGCAGCTACCAGATATGCA
GCTTTGGGTGCACCTACTCTGTATGACCATCCAGGGTCAGCTTATGGAAGAGGAGGATAC
TATGGATCCTCCCAAGGAATGGGCAACAAAAAGATATTTGTTGGCAGGCTTCCACAAGAG
GCAAACACGGAGGACCTAAGGCATTACTTTGGCAAATTTGGCCGAATTGTGGATGCATAT
ATCCCAAAGGACCCTAAAAGAAGTGGACATCGAGGTTTTGGTTTTGTCACCTTTGCTGAT
GAGGGTGTGGCAGATCGGGTAGCTCGCAGAAGTCATGAAATTCTAGGACATGAGGTTGCA
ATAGACACTGCTGCACCACTTGAGGGTGACTCTGGTGGTGGTTACATGGAACCCATGGAT
CTTTATGGGGCTTATGGTTCAATGCGAACTTATGGCAGGTTCTGCAGTGGTATCGACTAT
GATTACGGTTATGGTCACAGCGGAAGTAGCAGTAGCAGATCAAGGGCTGATTGGCGATAC
CGACCTTACTGA

Peptide Sequence

PEP ID

Os01t0945800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:41573942:41578783:-1 gene:Os01g0945800 transcript:Os01t0945800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os01t0945800-01)
Sequence

MATKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNV
LECEHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITD
LYMPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRG
ASQGGYGAYNAYISAATRYAALGAPTLYDHPGSAYGRGGYYGSSQGMGNKKIFVGRLPQE
ANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFADEGVADRVARRSHEILGHEVA
IDTAAPLEGDSGGGYMEPMDLYGAYGSMRTYGRFCSGIDYDYGYGHSGSSSSRSRADWRY
RPY

Transcript Sequence

Transcript ID

Os01t0945800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:41573942:41578783:-1 gene:Os01g0945800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os01t0945800-01)
Sequence

AAGCCAATTTGCGACGAACCCTAACCGCCCACCAAATCCTCTCCTCCTTCCCCAACGGCG
AGCGTCCCCGGCGAATCCGCCTTGACGGAGGCACCCCGGCGAGCTCACCTTCCCGGAGGA
ATCCCAGCTCAGCCTCATCGTCTTCGGTGAGGGAAATATCTTGGTGATTCTTGGGAACCT
TCAGAAAGACCACTTAATAGTTTTCCTTGGCCCAGAAAGGCTTGAGGCTTGAGAGCTGAA
AAGTTCTGCTGGAGCTAGTGCTATAATGGCCACAAAACTTGTGGTTCTTGGAATCCCATG
GGATGTGGACACTGAAGGATTAAGAGAGTACATGGGCAAGTTTGGACCCCTAGATGATTG
CGTCGTCATGAAGGAGCGTTCGTCTGGTCGATCTCGTGGGTTTGGTTATGTAACGTTCTC
ATCAGCTGATGATGCCAAGAATGTTCTTGAGTGTGAGCATGTTCTCGGAAACCGAACTCT
AGAAGTGAAGATAGCCACTCCTAAGGAAGAAATGAAATCACAGGGATCAAAAAAGGCTAC
TAGAATATTTGTTGCTCGAATTCCGCAGTCCGTGGATGAGTCCATGTTTCGTAGGCATTT
TGAAGCCTATGGAGAAATCACTGATCTTTACATGCCAAAGGAACATGGTTCAAAGGGTCA
TCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGAATCTGTGGACAGTATCATGCAAGA
TTCACATGAACTGGATGGCACAACAGTAGTTGTTGACCGCGCCACTCCTAAGGATGAAGA
AGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTATGGTGCATATAATGCATA
CATTTCAGCAGCTACCAGATATGCAGCTTTGGGTGCACCTACTCTGTATGACCATCCAGG
GTCAGCTTATGGAAGAGGAGGATACTATGGATCCTCCCAAGGAATGGGCAACAAAAAGAT
ATTTGTTGGCAGGCTTCCACAAGAGGCAAACACGGAGGACCTAAGGCATTACTTTGGCAA
ATTTGGCCGAATTGTGGATGCATATATCCCAAAGGACCCTAAAAGAAGTGGACATCGAGG
TTTTGGTTTTGTCACCTTTGCTGATGAGGGTGTGGCAGATCGGGTAGCTCGCAGAAGTCA
TGAAATTCTAGGACATGAGGTTGCAATAGACACTGCTGCACCACTTGAGGGTGACTCTGG
TGGTGGTTACATGGAACCCATGGATCTTTATGGGGCTTATGGTTCAATGCGAACTTATGG
CAGGTTCTGCAGTGGTATCGACTATGATTACGGTTATGGTCACAGCGGAAGTAGCAGTAG
CAGATCAAGGGCTGATTGGCGATACCGACCTTACTGAGCCTGCTGTCTTGTTACTGTTAA
TGATGTTTTAGTTTACCTCCAAGGGAACTGTGGAAACGGAGAAAAGAACAACTCCATAAA
GAATGCCAGGTTGTACTATGTTAATCTTAAGCGGGACGGGACATACGTGGAATCTGTATT
TCAGTTCATCCTGTAAATTTTTCTTTGCCATTAGAACGCATTAATGCGGTTTCTGTGCCA
GGATGCCATGAGATCGAGGCAGCAGTGTAGTTATCATTATTGTGGAAGTACCATATGTAA
TAACAATCTTTCTTCTACACATGTAAACGGTGGTTCTGGTTTTTGAGCCTCTCGTGCCTG
ATCCTGCTTTCTTGTCTG