Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0943800-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:41470321:41478321:1 gene:Os01g0943800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA, clone: J100054L12, full insert sequence. (Os01t0943800-01);Similar to cDNA clone:001-029-B04, full insert sequence. (Os01t0943800-02)
Sequence

ATGTCGGAATCGGCCCTCGACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCA
GATGCTTTCATAGGAGAAAGTGTTGGTAAAGGTAAAGAAGATGGAGCAACCGTAGATAAC
ATGGACCCGTCCCGCCCTTTTCTAGTTATCAAGAAGTCTGATTTGGATAAGGCTGGTGAG
TGGGTTAAAATAAAATATGCTTGGATGGCCAAGTCCTTAACAAATGATATAATCATCCCA
GACCCTACCCCTCAGGTGGTGCGGGATGCCTTCTTTGATATATCTCCCCGCTTGGACTCC
GTCTTGAGAAAGGACAGTGTCCGGTGCTTCTTCCGTTTGTTCGCGGAATGTACTGCGGCC
ATGGCATTTAAGTGTAACATCACCTCAGAAACCTTATCCTGCATTGTCAGGCATAATGCC
TTGCGATGTGCGAAAACTGTATTGGAGGGCAAGGCACCTCAGCTCAGTTGTATGCATGCC
AATCCAAACTGCATTAACCCATATGGAATTTTTCCACTCCATGGAGCTGCTGAACGGTTC
TCTGTTGACATGATCAAGTTGCTGTTCTGCCATGGTGCTTCAGCCAATTTACACACAGTC
AATGATGCTGGCATTCCCGGACTACTCCCGCTCCATGTTGCAGTTGGAAATACTTGCTTG
CATAAATATCTGGAGGACAATCTATCTCCTGTGCAGTATCATGAGGATTATATCTACAAG
CTCATTCATCTGCTGTGTCTACCTGAGATGAAGGTTTTTTTGGATACAGTTAGACTGCTT
GCTGAAAAAACAGATAATCTAGCTGATGAGCTCTGGAATTACATGAAGAATGACAAGCTT
GTAGAATCCGCAGTTTTACTCCTGGCAGCCCGAAAACATATCCGTGAGGGCAAACCTGAT
GGGTTCGACATTATCGCGCAACGTATATATGAGGACTATGATTCCCTAGTGTGTGATAAA
GGTGATACTGCAGAGGGGCAGAAGCTGCTGGAGGAAAGAAGAGCACTTTTGAAATGTAAA
TGTCTGATTGTCACTATAATTTCGCAAGCTGGTGAGGTTTTGGATAACTACATTCAAGCA
CATTCAGAGGTGCCCAATGTGGAGGTCCTTGCGCGTGTTTCATATATTCTTAAGGAATTC
GGGTTTTGCCCTAACGAAGAATACATTGACACCATGATCCTGTACTGCTCTTTTTGTATT
CAATATAATATTTTTTTTCTATGCAAATGTTTGTTGTTTATTAATTATTTCTTAAACTTG
TTATTGAAGCTGTCCATATAA

Peptide Sequence

PEP ID

Os01t0943800-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:41470321:41478321:1 gene:Os01g0943800 transcript:Os01t0943800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA, clone: J100054L12, full insert sequence. (Os01t0943800-01);Similar to cDNA clone:001-029-B04, full insert sequence. (Os01t0943800-02)
Sequence

MSESALDKHIVVKIPDHFLPDAFIGESVGKGKEDGATVDNMDPSRPFLVIKKSDLDKAGE
WVKIKYAWMAKSLTNDIIIPDPTPQVVRDAFFDISPRLDSVLRKDSVRCFFRLFAECTAA
MAFKCNITSETLSCIVRHNALRCAKTVLEGKAPQLSCMHANPNCINPYGIFPLHGAAERF
SVDMIKLLFCHGASANLHTVNDAGIPGLLPLHVAVGNTCLHKYLEDNLSPVQYHEDYIYK
LIHLLCLPEMKVFLDTVRLLAEKTDNLADELWNYMKNDKLVESAVLLLAARKHIREGKPD
GFDIIAQRIYEDYDSLVCDKGDTAEGQKLLEERRALLKCKCLIVTIISQAGEVLDNYIQA
HSEVPNVEVLARVSYILKEFGFCPNEEYIDTMILYCSFCIQYNIFFLCKCLLFINYFLNL
LLKLSI

Transcript Sequence

Transcript ID

Os01t0943800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:41470321:41478321:1 gene:Os01g0943800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA, clone: J100054L12, full insert sequence. (Os01t0943800-01);Similar to cDNA clone:001-029-B04, full insert sequence. (Os01t0943800-02)
Sequence

ATTCCACCGCCATCGCCTCCGGCGAACTCTCCACCGCCCCCTTTCCTACATCCCACCACT
ATTTTATAAGCCAGCCCTTCATCTCATCTGGAGATCTGGTTCTACTCATCCAGGAAAGCC
CCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGACAAACATATAGTGG
TGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCATAGGAGAAAGTGTTGGTAAAGGTA
AAGAAGATGGAGCAACCGTAGATAACATGGACCCGTCCCGCCCTTTTCTAGTTATCAAGA
AGTCTGATTTGGATAAGGCTGGTGAGTGGGTTAAAATAAAATATGCTTGGATGGCCAAGT
CCTTAACAAATGATATAATCATCCCAGACCCTACCCCTCAGGTGGTGCGGGATGCCTTCT
TTGATATATCTCCCCGCTTGGACTCCGTCTTGAGAAAGGACAGTGTCCGGTGCTTCTTCC
GTTTGTTCGCGGAATGTACTGCGGCCATGGCATTTAAGTGTAACATCACCTCAGAAACCT
TATCCTGCATTGTCAGGCATAATGCCTTGCGATGTGCGAAAACTGTATTGGAGGGCAAGG
CACCTCAGCTCAGTTGTATGCATGCCAATCCAAACTGCATTAACCCATATGGAATTTTTC
CACTCCATGGAGCTGCTGAACGGTTCTCTGTTGACATGATCAAGTTGCTGTTCTGCCATG
GTGCTTCAGCCAATTTACACACAGTCAATGATGCTGGCATTCCCGGACTACTCCCGCTCC
ATGTTGCAGTTGGAAATACTTGCTTGCATAAATATCTGGAGGACAATCTATCTCCTGTGC
AGTATCATGAGGATTATATCTACAAGCTCATTCATCTGCTGTGTCTACCTGAGATGAAGG
TTTTTTTGGATACAGTTAGACTGCTTGCTGAAAAAACAGATAATCTAGCTGATGAGCTCT
GGAATTACATGAAGAATGACAAGCTTGTAGAATCCGCAGTTTTACTCCTGGCAGCCCGAA
AACATATCCGTGAGGGCAAACCTGATGGGTTCGACATTATCGCGCAACGTATATATGAGG
ACTATGATTCCCTAGTGTGTGATAAAGGTGATACTGCAGAGGGGCAGAAGCTGCTGGAGG
AAAGAAGAGCACTTTTGAAATGTAAATGTCTGATTGTCACTATAATTTCGCAAGCTGGTG
AGGTTTTGGATAACTACATTCAAGCACATTCAGAGGTGCCCAATGTGGAGGTCCTTGCGC
GTGTTTCATATATTCTTAAGGAATTCGGGTTTTGCCCTAACGAAGAATACATTGACACCA
TGATCCTGTACTGCTCTTTTTGTATTCAATATAATATTTTTTTTCTATGCAAATGTTTGT
TGTTTATTAATTATTTCTTAAACTTGTTATTGAAGCTGTCCATATAACAAGATTTCTTAC
AGCGACATAGTTCACAAAGATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCT
GCTGCAGAAAAAAAGGCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATA
AAGAGAAATTTTTTCCCCTACTGGAGATCAGTATTAGGGGCCCAGCTGTCTGTATCCAAT
GGAGCAGCAGATGAGAAGTCAATGCTTCATCGTCCACAGTTCCGTAATTCAGTAGTGAGT
AACGAGTCTTCGAGTCTGAACCATAATATTAGTTTCTTGGGAAGAATTCAGCAACTGAGT
GGTACTCATGAATCGAGAAGGTACAGTACTGCTGCATTCAGAATGCTCACGAAGGTGCTA
AAGACATGAGCAAAAAGGTGCCTAGTGGCATGTTGCTGTTGATAACCATAGGTCTGCAAA
GTATTATGCTGCGCACGTCTTTTGCGGACACCTTAAGAAGGTTGCGAATATACATGTGAC
CACCAAAACCTTGTTCAAAGTGATGCTAAGTACTTTAAATTATGATGAAATGCAACATGC
CGTGTGTTGTATTCGGCTTGAACCCTCGACCCGCGAGATGTGGACATGCGTGCCAGCATG
TTGTACTTGTACCAGGTTCAACGTTAGCTTGAACACTGAACAAGTTAAATGTGTTGCAAA
ATGCCATTTTTCTTTATCAGCAATCTCTTCTACCTATATCAGGGTCATGATTCTAGAATG
TTATTGGGCCACGTGGCAGCCTGAAAAATTAGCTAAACATCACCAAAATTTTTGCCACGT
GTCAATCAGATATAAGCTCTTGTGATGTCCCTTGCACATCAGAATCTCTAGAAAACCCAT
TACTTTACCTATCTCTTTGCACTAATGCAGTTGATAAGTATCGACCAATAAAATAATAAA
GAGAGTTAATAAGTGCTTCACTTTTGCC