Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0942900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:41439358:41447125:1 gene:Os01g0942900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA clone:J023028M23, full insert sequence. (Os01t0942900-01)
Sequence

ATGTCGGAATCGGCCCTCGACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCA
GATGCTTTCATAGGAGAAAGTGTTGGTAAAGGTAAAGAAGATGGAGCAACCGTAGATAAC
ATGGACCCGTCCCGCCCTTTTCTAGTTATCAAGAAGTCTGATTTGGATAAGGCTGATGAG
TGGGTTAAAATAAAATATGCTTGGATGGCCAAGTCCTTAACAAATGATATAATCATCCCA
GACCCTACCCCTCAGGTGGTGCGGGATGCCTTCTTTGATATATCTCCCCGCTTGGACTCC
GTCTTGAGAAAGGACAGTGTCCGGTGCTTCTTCCGTTTGTTCGCGGAATGTACTGCGGCC
ATGGCATTTAAGTGTAACATCACCTCAGAAACCTTATCCTGCATTGTCAGGCATAATGCC
TTGCGATGTGCGAAAACTGTATTGGAGGGCAAGGCACCTCAGCTCAGTTGTATGCATGCC
AATCCAAACTGCATTAACCCATATGGAATTTTTCCACTCCATGAAGCTGCTGAACGGTTC
TCTGTTGACATGATCAAGTTGCTGTTCTGCCATGGTGCTTCAGCCAATTTACACACAGTC
AATGATGCTGGCATTCCCGGACTACTCCCGCTCCATGTTGCAGTTGGAAATACTTGCTTG
CATAAATATCTGGAGGACAATCTATCTCCTGTGCAGTATCATGAGGATTATATCTACAAG
CTCATTCATCTGCTGTGTCTACCTGAGATGAAGGTTTTTTTGGATACAGTTAGACTGCTT
GCTGAAAAAACAGATAATCTAGCTGATGAGCTCTGGAATTACATGAAGAATGACAAGCTT
GTAGAATCCGCAGTTTTACTCCTGGCAGCCCGAAAACATATCCGTGAGGGCAAACCTGAT
GGGTTCGACATTATCGCGCAACGTATATATGAGGACTATGATTCCCTAGTGTGTGATAAA
GGTGATACTGCAGAGGGGCAGAAGCTGCTGGAGGAAAGAAGAGCACTTTTGAAATGTAAA
TGTCTGATTGTCACTATAATTTCGCAAGCTGGTGAGGTTTTGGATAACTACATTCAAGCA
CATTCAGAGGTGCCCAATGTGGAGGTCCTTGCGCGTGTTTCATATATTCTTAAGGAATTC
GGGTTTTGCCCTAACGAAGAATACATTGACACCATGATCCTCTGTCCATATAACAAGATT
TCTTACAGCGACATAGTTCACAAAGATGTAACCAAGGCTGTTGCACAAATGTCTACTTCT
CTGCCTGCTGCAGAAAAAAAGGCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACA
TTCATAAAGAGAAATTTTTTCCCCTACTGGAGATCAGTATTAGGGGCCCAGCTGTCTGTA
TCCAATGGAGCAGCAGATGAGAAGTCAATGCTTCATCGTCCACAGTTCCGTAATTCAGTA
GTGAGTAACGAGTCTTCGAGTCTGAACCATAATATTAGTTTCTTGGGAAGAATTCAGCAA
CTGAGTGGTACTCATGAATCGAGAAGGTACAGTACTGCTGCATTCAGAATGCTCACGAAG
GTGCTAAAGACATGA

Peptide Sequence

PEP ID

Os01t0942900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:41439358:41447125:1 gene:Os01g0942900 transcript:Os01t0942900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA clone:J023028M23, full insert sequence. (Os01t0942900-01)
Sequence

MSESALDKHIVVKIPDHVLPDAFIGESVGKGKEDGATVDNMDPSRPFLVIKKSDLDKADE
WVKIKYAWMAKSLTNDIIIPDPTPQVVRDAFFDISPRLDSVLRKDSVRCFFRLFAECTAA
MAFKCNITSETLSCIVRHNALRCAKTVLEGKAPQLSCMHANPNCINPYGIFPLHEAAERF
SVDMIKLLFCHGASANLHTVNDAGIPGLLPLHVAVGNTCLHKYLEDNLSPVQYHEDYIYK
LIHLLCLPEMKVFLDTVRLLAEKTDNLADELWNYMKNDKLVESAVLLLAARKHIREGKPD
GFDIIAQRIYEDYDSLVCDKGDTAEGQKLLEERRALLKCKCLIVTIISQAGEVLDNYIQA
HSEVPNVEVLARVSYILKEFGFCPNEEYIDTMILCPYNKISYSDIVHKDVTKAVAQMSTS
LPAAEKKAARKKALKGWDPTFIKRNFFPYWRSVLGAQLSVSNGAADEKSMLHRPQFRNSV
VSNESSSLNHNISFLGRIQQLSGTHESRRYSTAAFRMLTKVLKT

Transcript Sequence

Transcript ID

Os01t0942900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:41439358:41447125:1 gene:Os01g0942900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cDNA clone:J023028M23, full insert sequence. (Os01t0942900-01)
Sequence

ATCGCCTCCGGCGAACTCTCCACCGCCCCCTTTCCTACATCCCACCACTATTTTATAAGC
CAGCCCTTCATCTCATCTGGAGATCTGGTTCTACTCATCCAGGAAAGCCCCAATCTTTAT
CATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGACAAACATATAGTGGTGAAAATTCCC
GATCATGTTCTGCCAGATGCTTTCATAGGAGAAAGTGTTGGTAAAGGTAAAGAAGATGGA
GCAACCGTAGATAACATGGACCCGTCCCGCCCTTTTCTAGTTATCAAGAAGTCTGATTTG
GATAAGGCTGATGAGTGGGTTAAAATAAAATATGCTTGGATGGCCAAGTCCTTAACAAAT
GATATAATCATCCCAGACCCTACCCCTCAGGTGGTGCGGGATGCCTTCTTTGATATATCT
CCCCGCTTGGACTCCGTCTTGAGAAAGGACAGTGTCCGGTGCTTCTTCCGTTTGTTCGCG
GAATGTACTGCGGCCATGGCATTTAAGTGTAACATCACCTCAGAAACCTTATCCTGCATT
GTCAGGCATAATGCCTTGCGATGTGCGAAAACTGTATTGGAGGGCAAGGCACCTCAGCTC
AGTTGTATGCATGCCAATCCAAACTGCATTAACCCATATGGAATTTTTCCACTCCATGAA
GCTGCTGAACGGTTCTCTGTTGACATGATCAAGTTGCTGTTCTGCCATGGTGCTTCAGCC
AATTTACACACAGTCAATGATGCTGGCATTCCCGGACTACTCCCGCTCCATGTTGCAGTT
GGAAATACTTGCTTGCATAAATATCTGGAGGACAATCTATCTCCTGTGCAGTATCATGAG
GATTATATCTACAAGCTCATTCATCTGCTGTGTCTACCTGAGATGAAGGTTTTTTTGGAT
ACAGTTAGACTGCTTGCTGAAAAAACAGATAATCTAGCTGATGAGCTCTGGAATTACATG
AAGAATGACAAGCTTGTAGAATCCGCAGTTTTACTCCTGGCAGCCCGAAAACATATCCGT
GAGGGCAAACCTGATGGGTTCGACATTATCGCGCAACGTATATATGAGGACTATGATTCC
CTAGTGTGTGATAAAGGTGATACTGCAGAGGGGCAGAAGCTGCTGGAGGAAAGAAGAGCA
CTTTTGAAATGTAAATGTCTGATTGTCACTATAATTTCGCAAGCTGGTGAGGTTTTGGAT
AACTACATTCAAGCACATTCAGAGGTGCCCAATGTGGAGGTCCTTGCGCGTGTTTCATAT
ATTCTTAAGGAATTCGGGTTTTGCCCTAACGAAGAATACATTGACACCATGATCCTCTGT
CCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAGATGTAACCAAGGCTGTTGCA
CAAATGTCTACTTCTCTGCCTGCTGCAGAAAAAAAGGCTGCGAGAAAAAAGGCACTTAAA
GGATGGGATCCAACATTCATAAAGAGAAATTTTTTCCCCTACTGGAGATCAGTATTAGGG
GCCCAGCTGTCTGTATCCAATGGAGCAGCAGATGAGAAGTCAATGCTTCATCGTCCACAG
TTCCGTAATTCAGTAGTGAGTAACGAGTCTTCGAGTCTGAACCATAATATTAGTTTCTTG
GGAAGAATTCAGCAACTGAGTGGTACTCATGAATCGAGAAGGTACAGTACTGCTGCATTC
AGAATGCTCACGAAGGTGCTAAAGACATGAGCAAAAAGGTGCCTAGTGGCATGTTGCTGT
TGATAACCATAGGTCTGCAAAGTATTATGCTGCGCACGTCTTTTGCGGACACCTTAAGAA
GGTTGCGAATATACATGTGACCACCAAAACCTTGTTCAAAGTGATGCTAAGTACTTTAAA
TTATGATGAAATGCAACATGCCGTGTGTTGTATTCGGCTTGAACCCTCGACCCGCGAGAT
GTGGACATGCGTGCCAGCATGTTGTACTTGTACCAGGTTCAACGTTAGCTTGAACACTGA
ACAAGTTAAATGTGTTGCAAAATGCCATTTTTCTTTATCAGCAATCTCTTCTACCTATAT
CAGGGT