Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0940000-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:41300203:41302983:1 gene:Os01g0940000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYTOKININ OXIDASE/DEHYDROGENASE 4 description:Cytokinin oxidase/dehydrogenase, Crown root formation (Os01t0940000-01)
Sequence	ATGCGGGGAGCCATGAAGCCGTCGATCGTGCACTGCCTCAAGCTGCTCATGCTGCTGGCG CTCGGCGGGGTCACCATGCACGTCCCCGACGAGGACGACGTGGTCGCGTCGCTCGGGGCG CTGCGCCTCGACGGCCATTTCAGCTTCGACGACGCCCACGCCGCCGCCCGGGACTTCGGC AACCGGTGCAGCCTCCTGCCGGCGGCCGTGCTCCACCCTGGCTCGGTGTCCGACGTCGCC GCCACCGTCAGGCGCGTGTTCCAGCTGGGCAGGAGCTCGCCGCTCACCGTCGCGGCGCGC GGGCACGGCCACTCGCTCCTCGGCCAGTCCCAGGCCGCCGGCGGGATCGTCGTCAAGATG GAGTCCCTCGCCGCCGCCGCAGCCAGGGCGGTGCGGGTGCACGGCGGCGCGTCGCCCCAC GTGGACGCCCCGGGCGGCGAGCTCTGGATCAACGTGCTGCATGAGACGCTCAAGCACGGG CTGGCGCCCAGGTCATGGACCGACTACCTCCATCTCACAGTCGGTGGCACCTTGTCGAAT GCGGGGGTCAGCGGGCAGGCGTTCCGGCATGGACCGCAGGTCAGCAATGTCAACCAACTG GAGATTGTGACAGGGAGGGGAGAAGTTGTCACCTGCTCGCACGAGGTGAACTCTGATCTC TTCTACGCTGCTCTTGGCGGCCTGGGCCAGTTTGGGATCATCACCAGGGCTCGGATTGCT CTTGAACCTGCTCCAAAGATGGTGCGGTGGATACGTGTTCTCTACTCGGACTTTGAGACC TTCACCGAGGACCAGGAGAAGCTGATCGCGTCTGAGAAGACCTTCGACTACATCGAAGGG TTTGTGATCATAAACAGGACAGGCATCCTCAACAACTGGAGGACGTCGTTCAAGCCACAG GACCCAGTGCAGGCAAGCCAGTTCCAGTCGGATGGAAGAGTGCTATACTGCCTTGAGCTG ACGATGAACTTCAACCACGATGAGGCTGACATCATGGAACAGGAAGTTGGTGCGCTGCTA TCTCGACTCAGATACATATCGTCCACTCTATTCTACACCGATGTCACATACCTGGAGTTC TTGGACAGGGTGCACACTTCTGAGCTGAAGCTGAGGGCTCAAGGCCTCTGGGAAGTCCCA CACCCGTGGCTGAATCTTCTGATCCCAAGGAGCACAGTCCACAAATTTGCAAAGGAAGTC TTCGGCAAGATCCTAAAAGATAGCAACAATGGTCCCATACTGCTTTACCCAGTGAACAGA ACCAAGTGGGACAACAGAACATCAGTGGTCATACCAGATGAAGAAATTTTCTACCTGGTT GGGTTCCTATCTTCAGCACCATCATCCTCAGGTCATGGTAGTGTCGAACATGCAATGAAC CTGAACAACAAAATAGTGGACTTCTGTGAAAAGAATGGTGTTGGGATGAAACAGTATCTA GCACCCTACACTACACAGAAGCAGTGGAAAGCCCACTTCGGAGCAAGGTGGGAGACATTT GAACGGAGGAAACACACGTACGATCCCCTAGCAATCCTAGCTCCAGGGCAGAGAATATTT CCAAAGGCATCACTACCTATGTCCTTGTGA

Peptide Sequence

PEP ID	Os01t0940000-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:41300203:41302983:1 gene:Os01g0940000 transcript:Os01t0940000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYTOKININ OXIDASE/DEHYDROGENASE 4 description:Cytokinin oxidase/dehydrogenase, Crown root formation (Os01t0940000-01)
Sequence	MRGAMKPSIVHCLKLLMLLALGGVTMHVPDEDDVVASLGALRLDGHFSFDDAHAAARDFG NRCSLLPAAVLHPGSVSDVAATVRRVFQLGRSSPLTVAARGHGHSLLGQSQAAGGIVVKM ESLAAAAARAVRVHGGASPHVDAPGGELWINVLHETLKHGLAPRSWTDYLHLTVGGTLSN AGVSGQAFRHGPQVSNVNQLEIVTGRGEVVTCSHEVNSDLFYAALGGLGQFGIITRARIA LEPAPKMVRWIRVLYSDFETFTEDQEKLIASEKTFDYIEGFVIINRTGILNNWRTSFKPQ DPVQASQFQSDGRVLYCLELTMNFNHDEADIMEQEVGALLSRLRYISSTLFYTDVTYLEF LDRVHTSELKLRAQGLWEVPHPWLNLLIPRSTVHKFAKEVFGKILKDSNNGPILLYPVNR TKWDNRTSVVIPDEEIFYLVGFLSSAPSSSGHGSVEHAMNLNNKIVDFCEKNGVGMKQYL APYTTQKQWKAHFGARWETFERRKHTYDPLAILAPGQRIFPKASLPMSL

Transcript Sequence

Transcript ID	Os01t0940000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:41300203:41302983:1 gene:Os01g0940000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYTOKININ OXIDASE/DEHYDROGENASE 4 description:Cytokinin oxidase/dehydrogenase, Crown root formation (Os01t0940000-01)
Sequence	CCTCCCCTTACCTACCTTGGTGGCCTCCTCTCGCTCTCGCTCTCCTTCTCTTCCTGCACC TGTTGCACCCCCAACAACTCTCACTCACTGCCAGTGTCAAGCAAGATTATACAGCTTGGT CTCATCTCTTAATTCCAAGCTTGTTTCACCGACCTGCCAAACTCGATTGATCCACAGATA GATAGTACTTCTGGTTGGGATCTTGAGCTTATATAGACCAGGAAGCATGCGGGGAGCCAT GAAGCCGTCGATCGTGCACTGCCTCAAGCTGCTCATGCTGCTGGCGCTCGGCGGGGTCAC CATGCACGTCCCCGACGAGGACGACGTGGTCGCGTCGCTCGGGGCGCTGCGCCTCGACGG CCATTTCAGCTTCGACGACGCCCACGCCGCCGCCCGGGACTTCGGCAACCGGTGCAGCCT CCTGCCGGCGGCCGTGCTCCACCCTGGCTCGGTGTCCGACGTCGCCGCCACCGTCAGGCG CGTGTTCCAGCTGGGCAGGAGCTCGCCGCTCACCGTCGCGGCGCGCGGGCACGGCCACTC GCTCCTCGGCCAGTCCCAGGCCGCCGGCGGGATCGTCGTCAAGATGGAGTCCCTCGCCGC CGCCGCAGCCAGGGCGGTGCGGGTGCACGGCGGCGCGTCGCCCCACGTGGACGCCCCGGG CGGCGAGCTCTGGATCAACGTGCTGCATGAGACGCTCAAGCACGGGCTGGCGCCCAGGTC ATGGACCGACTACCTCCATCTCACAGTCGGTGGCACCTTGTCGAATGCGGGGGTCAGCGG GCAGGCGTTCCGGCATGGACCGCAGGTCAGCAATGTCAACCAACTGGAGATTGTGACAGG GAGGGGAGAAGTTGTCACCTGCTCGCACGAGGTGAACTCTGATCTCTTCTACGCTGCTCT TGGCGGCCTGGGCCAGTTTGGGATCATCACCAGGGCTCGGATTGCTCTTGAACCTGCTCC AAAGATGGTGCGGTGGATACGTGTTCTCTACTCGGACTTTGAGACCTTCACCGAGGACCA GGAGAAGCTGATCGCGTCTGAGAAGACCTTCGACTACATCGAAGGGTTTGTGATCATAAA CAGGACAGGCATCCTCAACAACTGGAGGACGTCGTTCAAGCCACAGGACCCAGTGCAGGC AAGCCAGTTCCAGTCGGATGGAAGAGTGCTATACTGCCTTGAGCTGACGATGAACTTCAA CCACGATGAGGCTGACATCATGGAACAGGAAGTTGGTGCGCTGCTATCTCGACTCAGATA CATATCGTCCACTCTATTCTACACCGATGTCACATACCTGGAGTTCTTGGACAGGGTGCA CACTTCTGAGCTGAAGCTGAGGGCTCAAGGCCTCTGGGAAGTCCCACACCCGTGGCTGAA TCTTCTGATCCCAAGGAGCACAGTCCACAAATTTGCAAAGGAAGTCTTCGGCAAGATCCT AAAAGATAGCAACAATGGTCCCATACTGCTTTACCCAGTGAACAGAACCAAGTGGGACAA CAGAACATCAGTGGTCATACCAGATGAAGAAATTTTCTACCTGGTTGGGTTCCTATCTTC AGCACCATCATCCTCAGGTCATGGTAGTGTCGAACATGCAATGAACCTGAACAACAAAAT AGTGGACTTCTGTGAAAAGAATGGTGTTGGGATGAAACAGTATCTAGCACCCTACACTAC ACAGAAGCAGTGGAAAGCCCACTTCGGAGCAAGGTGGGAGACATTTGAACGGAGGAAACA CACGTACGATCCCCTAGCAATCCTAGCTCCAGGGCAGAGAATATTTCCAAAGGCATCACT ACCTATGTCCTTGTGACAGTATATGCTGTGAAAAGGCTTTTGTAGAGCATATGTTGTACA AAAATGTAGCGAAAATATCCTTTGTAAAGACGAAATCTACGGAAGGTAGCTTAAAGAACA CAGCGGGGCAACCAGTAGACTAGAACTCAAGAAGTAGTGGAAGATACCTCACAAAAGACT TCAAAGCAAAGCAGCGTGGCCTTAACTCTGGTTGCAGCTTTGGAGGCAAATGATTGGAGG ATTACAGTGGTCCTAGCAACTGAAGTCCAGCTGTTGTTACAGCATAGAGAAGAGCTGTGC TACCTCAATGATCACTAAATCACTGACTAGTGTAACTCATGTTAAGTTGTTTGTGTTCAG CTAACAACACTGCAGAAGGTAGCATCAGGGTAGACCCTTGATTAGCAAATAACACAGCCT GTTGCATGTGAGTACTATCTGCATAAATGCAGCAGATTACATTAGTTTTTATGAATCGAA TGTTATGTTTGCAAATGTTAAAGAAAAAAACAGCAAAGTTTCTTATT