Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0939300-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:41230854:41235586:-1 gene:Os01g0939300 gene_biotype:protein_coding transcript_biotype:protein_coding description:BRCT domain containing protein. (Os01t0939300-01)
Sequence

ATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATTACCTTAGTTCGCAGGAG
CCTGGTGATGAATCACAGATCAACGCTATTGACATTGTGGATAGGCTGCTAGTAGAAGAT
GATATAGAAACTTATCAGCAAATAAGCATCGACCAGACAACGAGGGCAAAGTCAGCTTCT
ACTTTAGGTTCAGATATAGCTCAATGCCTGGCCAAAAGGGCTAGGTGCAGTTCCCCACTA
AAAAAGGCTGGAAATTTTGACTGGGTTGATACCCCCACTGTTGATGATTGCAGAACCAGT
ATTATTTCCATGGAAAATACAGTAGATCGTGCTAATAATCAAGTGAAACACGGTGGCTGT
GGATCAAGTACCAGGGCTTGGCCCATACTAGAATGCATTGATGAGGACTTGGGTACTAAT
TGTCTGAAGAAAACGGAACCATTTTGTGGTACTGATGATTTATACCAAGAATATGATATT
GGGCCAAATACTCAGATGGCAGCTGAAGCCATGGAAGCATTGTTCAATGCTTCAACTGTC
AGTTATGATGTCAAGGAGAATGAACGTCCTGAAGATTCTGTTGTTAAAAATATGACAAAA
GGAACCAAAGTTGATAAGACATGTGCAGTTCATTCACCAATTCAAAAGAGAAAGGTAAAC
TTCTTGCGTCACAGATCAGGAGTGGCAACAGAATACAAGCAAATCAAGGTAGATGATACA
GTAAGGGAAAATGGTGAAAGTTCAGTCTCTCATACAAACACATCACAAACCAGGAAGTAT
ACGAAACAGATGGCAGGGAAAGCAAAAAGAAACATCAGCAGTGGGATTACTCAAAGAGAC
ATAGATCATGAGGTGTCAGAAGTAATCACAAGATCTGGTACAAATGACTCAAATATTCCT
CTTTCACTAGATACAGATGCTTTAATCCATCCTAAAAGGAGGAGGACATATATATTTACC
TCGGGAAGCTCAAAAATTGAGTTCATTGAAGCTATCAAGCCAACGGCACTTAGAGCCAAA
ACTACAGAAGTAAAACAGCTTTCAACAGCTAACACAGTAAGCGTATCTGATCAAGATACC
ACAAGTGGCTTGAGAATGAGTCAACATTCTTCTTTTGCTGATCATGAAGCATCAGCAGGT
AGTTCATACTTCAATCCACTTGCAGAAACTTTTACTGTAGGGCTTGAAAAACAGTCAATA
CCTGAGAAGAAGGGTCATGACTCTAGTTTGATGCCCAGTGTACCGCTGAGAGAGCTAAAT
GGTGCAGGGCCCCAAGCTAGGACACGTACATCAGAAACACCGAAGAGAGTCCTGAAATCA
CCAGGTTCCAGAGAACTTGCTAACCTCTTTAGAAATGAAGTATCTCCAGTATTGCAATCT
AGCAGGCGAAGGAGAAAGCATATGTCCACAGTCCGTGTACTACTTAGCCAAAGTATGGGC
AATGAAACCCTCAACGATCAAACAAAGATTTTGATACATTTTGGATTATCAGTGGCAACA
ACTATTTCAGAGGCTACACACTTTGTTGCTGAAAAGTTTGCGCGCACAAGGAACATGCTA
GAGGCAATAGCTACGGGCATACCTGTAGTCACACCGGCATGGCTTGAATGCTGCAGGGAA
GCTAGGAGTTTCATTGATGAGAAAAGATACATTCTGAGGGATATAAAGAAGGAAAAGGAG
CTAGGCTTTAGCATGCCTGTCTCACTAAGCCGAGCTTGCAAAAAACCTTTGTTAGAGGGT
AGAAGAGTGCTAATCACACCAAATGCTAAACCTAGCAAGGAGCTTTTGAAAAGTTTAGTA
GTGACTGCTCATGGCAAGGTGTTGGAGAGAAACGCAATGTCCAAGATGAAGAATAGAAGT
TTAATGGGAGCTTTTGTAATCTCTTGTGAACAAGACTACAAAATATGCGTGCCATTCATT
AAGAACGGTTTTGAGGTGTTTGAATCAGAGCTTGTGCTTAATGGTATTGTCACCCAGAAG
CTAGAATTTGAAAGGTATCGTCTTTTTTCAGGATAA

Peptide Sequence

PEP ID

Os01t0939300-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:41230854:41235586:-1 gene:Os01g0939300 transcript:Os01t0939300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:BRCT domain containing protein. (Os01t0939300-01)
Sequence

MHMMTSASGCAKLDYLSSQEPGDESQINAIDIVDRLLVEDDIETYQQISIDQTTRAKSAS
TLGSDIAQCLAKRARCSSPLKKAGNFDWVDTPTVDDCRTSIISMENTVDRANNQVKHGGC
GSSTRAWPILECIDEDLGTNCLKKTEPFCGTDDLYQEYDIGPNTQMAAEAMEALFNASTV
SYDVKENERPEDSVVKNMTKGTKVDKTCAVHSPIQKRKVNFLRHRSGVATEYKQIKVDDT
VRENGESSVSHTNTSQTRKYTKQMAGKAKRNISSGITQRDIDHEVSEVITRSGTNDSNIP
LSLDTDALIHPKRRRTYIFTSGSSKIEFIEAIKPTALRAKTTEVKQLSTANTVSVSDQDT
TSGLRMSQHSSFADHEASAGSSYFNPLAETFTVGLEKQSIPEKKGHDSSLMPSVPLRELN
GAGPQARTRTSETPKRVLKSPGSRELANLFRNEVSPVLQSSRRRRKHMSTVRVLLSQSMG
NETLNDQTKILIHFGLSVATTISEATHFVAEKFARTRNMLEAIATGIPVVTPAWLECCRE
ARSFIDEKRYILRDIKKEKELGFSMPVSLSRACKKPLLEGRRVLITPNAKPSKELLKSLV
VTAHGKVLERNAMSKMKNRSLMGAFVISCEQDYKICVPFIKNGFEVFESELVLNGIVTQK
LEFERYRLFSG

Transcript Sequence

Transcript ID

Os01t0939300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:41230854:41235586:-1 gene:Os01g0939300 gene_biotype:protein_coding transcript_biotype:protein_coding description:BRCT domain containing protein. (Os01t0939300-01)
Sequence

CTCTCTCTCTCATCCGTTCCCCAATCCATCCAGGAGTTCATGGCGGATCAATGGCGAAGC
GAAGGAGCTAAACCCTAGAGCTCTCCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGG
CATCCCCTTCTCAGTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGT
TGGATTACCTTAGTTCGCAGGAGCCTGGTGATGAATCACAGATCAACGCTATTGACATTG
TGGATAGGCTGCTAGTAGAAGATGATATAGAAACTTATCAGCAAATAAGCATCGACCAGA
CAACGAGGGCAAAGTCAGCTTCTACTTTAGGTTCAGATATAGCTCAATGCCTGGCCAAAA
GGGCTAGGTGCAGTTCCCCACTAAAAAAGGCTGGAAATTTTGACTGGGTTGATACCCCCA
CTGTTGATGATTGCAGAACCAGTATTATTTCCATGGAAAATACAGTAGATCGTGCTAATA
ATCAAGTGAAACACGGTGGCTGTGGATCAAGTACCAGGGCTTGGCCCATACTAGAATGCA
TTGATGAGGACTTGGGTACTAATTGTCTGAAGAAAACGGAACCATTTTGTGGTACTGATG
ATTTATACCAAGAATATGATATTGGGCCAAATACTCAGATGGCAGCTGAAGCCATGGAAG
CATTGTTCAATGCTTCAACTGTCAGTTATGATGTCAAGGAGAATGAACGTCCTGAAGATT
CTGTTGTTAAAAATATGACAAAAGGAACCAAAGTTGATAAGACATGTGCAGTTCATTCAC
CAATTCAAAAGAGAAAGGTAAACTTCTTGCGTCACAGATCAGGAGTGGCAACAGAATACA
AGCAAATCAAGGTAGATGATACAGTAAGGGAAAATGGTGAAAGTTCAGTCTCTCATACAA
ACACATCACAAACCAGGAAGTATACGAAACAGATGGCAGGGAAAGCAAAAAGAAACATCA
GCAGTGGGATTACTCAAAGAGACATAGATCATGAGGTGTCAGAAGTAATCACAAGATCTG
GTACAAATGACTCAAATATTCCTCTTTCACTAGATACAGATGCTTTAATCCATCCTAAAA
GGAGGAGGACATATATATTTACCTCGGGAAGCTCAAAAATTGAGTTCATTGAAGCTATCA
AGCCAACGGCACTTAGAGCCAAAACTACAGAAGTAAAACAGCTTTCAACAGCTAACACAG
TAAGCGTATCTGATCAAGATACCACAAGTGGCTTGAGAATGAGTCAACATTCTTCTTTTG
CTGATCATGAAGCATCAGCAGGTAGTTCATACTTCAATCCACTTGCAGAAACTTTTACTG
TAGGGCTTGAAAAACAGTCAATACCTGAGAAGAAGGGTCATGACTCTAGTTTGATGCCCA
GTGTACCGCTGAGAGAGCTAAATGGTGCAGGGCCCCAAGCTAGGACACGTACATCAGAAA
CACCGAAGAGAGTCCTGAAATCACCAGGTTCCAGAGAACTTGCTAACCTCTTTAGAAATG
AAGTATCTCCAGTATTGCAATCTAGCAGGCGAAGGAGAAAGCATATGTCCACAGTCCGTG
TACTACTTAGCCAAAGTATGGGCAATGAAACCCTCAACGATCAAACAAAGATTTTGATAC
ATTTTGGATTATCAGTGGCAACAACTATTTCAGAGGCTACACACTTTGTTGCTGAAAAGT
TTGCGCGCACAAGGAACATGCTAGAGGCAATAGCTACGGGCATACCTGTAGTCACACCGG
CATGGCTTGAATGCTGCAGGGAAGCTAGGAGTTTCATTGATGAGAAAAGATACATTCTGA
GGGATATAAAGAAGGAAAAGGAGCTAGGCTTTAGCATGCCTGTCTCACTAAGCCGAGCTT
GCAAAAAACCTTTGTTAGAGGGTAGAAGAGTGCTAATCACACCAAATGCTAAACCTAGCA
AGGAGCTTTTGAAAAGTTTAGTAGTGACTGCTCATGGCAAGGTGTTGGAGAGAAACGCAA
TGTCCAAGATGAAGAATAGAAGTTTAATGGGAGCTTTTGTAATCTCTTGTGAACAAGACT
ACAAAATATGCGTGCCATTCATTAAGAACGGTTTTGAGGTGTTTGAATCAGAGCTTGTGC
TTAATGGTATTGTCACCCAGAAGCTAGAATTTGAAAGGTATCGTCTTTTTTCAGGATAAA
ACCGTGTGAAGTGTCCGCGAGTCTTGATAAATTAGGTACTATGCAACAAAGCGTATTATT
GTACATAAATCCTTATTATATTCCTCTAGTTACTCGTATTCGTATGTTTCCTCGCAAATT
TGCGAACGCTTGTTGCAAGTATTTATCCCTGCAGCCTCTTCTTGGCATGACTATTTCTGT
GGGTAGACACCAAGCTCTTGTGTGAAGAAGAATGATGATGTCATTAACATGGTTACTCAT
TT