Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0939100-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:41220037:41227329:1 gene:Os01g0939100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CA2+-ATPASE 6 description:Similar to Calmodulin-stimulated calcium-ATPase. (Os01t0939100-01)
Sequence	ATGTCGTTCATCCGGAAGAAGTCGATGGAGTTCTTGAAGAGCTTCGAGGTGCCGGCGAAG AACCCGTCGGAGGAGGCGCAGCGCCGGTGGCGGGATGCCGTCGGCACGCTCGTCAAGAAC CGCCGCCGCCGCTTCCGGATGGTACCCGACCTCGACAAGCGCTCGCAGGCCGAGACCCAG CGCCGCAAGATCCAGGAGAAGCTTCGTGTTGCACTCTTCGTTCAGAAAGCTGCACTTCAG TTCATCGATGCCGTCCGCAAGACGGAGCACCCGTTGCCGGAGCTCGCCCGGCAATGCGGC TTCTCCGTCAGCGCCGAGGAGCTCGCCTCCATCGTGCGCGGCCACGACACCAAGAGCCTG AGATTCCACAATGGCGTCGACGGCATCGCCCGGAAGGTGGCCGTGTCCCTCGCCGACGGC GTCAAGTCCGACGACGCCGGCCTCCGCGCCGAGGTCTACGGCGCCAACCAGTACACGGAG AAGCCGCCAAGAACGTTCTGGATGTTTCTGTGGGACGCCAGCCAGGACATGACGCTGTTG CTGCTCGCCTTCTGCGCCGCCGTCTCCGTCGCCATCGGCCTTGCCACCGAGGGGTGGCCG AGCGGCATGTACGACGGCGTCGGCATCATGCTCACCATCCTCCTCGTCGTCATGATCACC GCGGCGAGCGACTACAAGCAGTCGCTGCAGTTCAGGGACCTGGACAAGGAGAAGAAGAAG ATCGACGTGCAGGTCACCCGCGACGGCTACCGGCAGAAGGTGTCCATCTACGACATCGTC GTCGGCGACATCGTGCATCTGTCCATCGGCGACCAGGTCCCCGCCGACGGGTTGTTCATT GATGGATACTCGTTCGTCGTCGACGAGTCGAACCTCTCCGGCGAGAGCGAGCCGGTGCAC GTGTCGACGGCGAACCGGTTCTTGCTCGGAGGGACCAAGGTGCAGGACGGGTCGGCGAGG ATGCTGGTGACGGCGGTGGGGATGCGGACGGAGTGGGGGAACCTGATGGAGACGCTGAGC CAGGGCGGCGAGGACGAGACGCCGCTGCAGGTGAAGCTCAACGGCGTGGCCACCATCATC GGCAAGATCGGGCTGGCGTTCGCGGTGCTCACGTTCACGGTGCTCATGGCGAGGTTCCTG CTCGGCAAGGCGGGCGCGCCGGGCGGGCTGCTGCGGTGGCGGATGGTGGACGCGCTCGCG GTGCTCAACTTCTTCGCCGTCGCCGTCACCATCATCGTCGTGGCCGTGCCGGAGGGGCTC CCGCTCGCCGTCACGCTCAGCCTCGCGTTCGCCATGAAGAAGCTGATGCAGGAGCGCGCG CTCGTGCGCCACCTCTCAGCGTGCGAGACGATGGGGTCGGCGAGCTGCATCTGCACGGAC AAGACCGGCACGCTCACCACCAACCACATGGTCGTCGAGAAGATCTGGGCGTCCGGCGCC GCGCAGACGATGAGCAACGCCAAGGGATTCGACCAGCTCACCTCGTCGATGTCCGAGACC TTCGCCAAGGTGCTCCTCGAGGGCGTCTTCCATTGCTCCGGCTCCGAGGTCGTCCGTGGC AAGGACGGCAGGCACACCATCATGGGCACGCCCACCGAGACGGCCATCCTCGAGTTCGGG CTCGCGGTGGAGAAGCGCGCCAGGATCGAGCACACCGGCGCCGGGAAGCTCAAGGTGGAG CCGTTCAACTCGGTGAAGAAGACGATGGCCGTGGTGATCGCGTCCCCGAGCGCCGGCGGC CGCCCCCGCGCGTTCCTCAAGGGCGCCTCCGAGGTCGTCCTGAGCCGGTGCAGCCTCGTC CTCGACGGCACCGGGAACGTCGAGAAGCTCACGGACGCCAAGGCGAAGCGGGTGGCGAGC GCCATCGACGCGTTCGCGTGCGAGGCGCTGCGCACGCTCTGCCTCGCCTACCAGGACGTC GACGGCGGCGGCGGCGACATCCCCGGCGAAGGGTACACGCTCATCGCCGTGTTCGGCATC AAGGACCCGCTCCGCCCCGGCGTCCGGGAGGCCGTGGCGACGTGCCACGCCGCCGGCATC AACGTGCGCATGGTCACCGGCGACAACATCAACACAGCGAAGGCGATCGCCAGGGAGTGC GGCATCCTGACCGACGACGGCATCGCCATCGAAGGGCCCGAGTTCCGGAACAAGGATCCC GACCAGATGAGAGAGATCATACCCAAAATCCAGGTGATGGCGAGGTCGCTGCCGTTGGAC AAGCACACGCTGGTGACGAACCTGAGGGGCATGTTCAACGAGGTGGTGGCGGTGACCGGC GACGGCACCAACGACGCGCCGGCGCTGCACGAGGCCGACATCGGCCTCGCCATGGGCATC GCTGGAACAGAGGTTGCCAAGGAGAACGCCGATGTGATCATCATGGACGACAACTTCTCG ACCATCATCAACGTTGCCAAATGGGGTCGCTCCGTCTACATCAACATCCAGAAGTTCGTC CAGTTCCAGCTCACCGTCAATGTGGTCGCCCTGATGGTGAACTTCATCTCTGCGTCCTTC ACAGGGAGTGCGCCGCTGACGATTGTGCAGCTGCTGTGGGTGAACCTGATCATGGACACA CTGGGGGCGCTGGCGCTGGCGACAGAGCCGCCGAACGACGCGATGATGAAGAGGCCGCCG GTGGGTCGCGGCGACAACTTCATCACCAAGGTGATGTGGAGGAACATCGTCGGGCAGAGC ATCTACCAGCTGGTCGTGCTCGGCGTCCTCCTCCTCAGAGGGAAGAGCCTCCTCCAGATC AATGGCCCTCAAGCTGACAGCCTACTCAACACCTTCGTCTTCAACACCTTTGTCTTCTGC CAGGTTTTCAACGAGGTGAACAGCAGGGAGATGGAGAAGATCAACGTTTTCAGCGGCATC TTCAGCAGCTGGATCTTCTCGGCGGTGGTCGGCGTCACGGCGGGGTTCCAGGTGATCATG GTGGAGCTCCTTGGGACTTTCGCCAACACGGTGCATCTCAGCGGGAAGCTGTGGCTGACG AGCGTGCTGATCGGGTCGGTCGGCTTGGTCATCGGCGCCATCTTGAAGTGCATCCCGGTC GAATCCGGCAGCGACGCTTCTGATCGTCACGACGGATACCGGCCGATCCCCACCGGCCCG AGTGCGGTTTGA

Peptide Sequence

PEP ID	Os01t0939100-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:41220037:41227329:1 gene:Os01g0939100 transcript:Os01t0939100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CA2+-ATPASE 6 description:Similar to Calmodulin-stimulated calcium-ATPase. (Os01t0939100-01)
Sequence	MSFIRKKSMEFLKSFEVPAKNPSEEAQRRWRDAVGTLVKNRRRRFRMVPDLDKRSQAETQ RRKIQEKLRVALFVQKAALQFIDAVRKTEHPLPELARQCGFSVSAEELASIVRGHDTKSL RFHNGVDGIARKVAVSLADGVKSDDAGLRAEVYGANQYTEKPPRTFWMFLWDASQDMTLL LLAFCAAVSVAIGLATEGWPSGMYDGVGIMLTILLVVMITAASDYKQSLQFRDLDKEKKK IDVQVTRDGYRQKVSIYDIVVGDIVHLSIGDQVPADGLFIDGYSFVVDESNLSGESEPVH VSTANRFLLGGTKVQDGSARMLVTAVGMRTEWGNLMETLSQGGEDETPLQVKLNGVATII GKIGLAFAVLTFTVLMARFLLGKAGAPGGLLRWRMVDALAVLNFFAVAVTIIVVAVPEGL PLAVTLSLAFAMKKLMQERALVRHLSACETMGSASCICTDKTGTLTTNHMVVEKIWASGA AQTMSNAKGFDQLTSSMSETFAKVLLEGVFHCSGSEVVRGKDGRHTIMGTPTETAILEFG LAVEKRARIEHTGAGKLKVEPFNSVKKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLV LDGTGNVEKLTDAKAKRVASAIDAFACEALRTLCLAYQDVDGGGGDIPGEGYTLIAVFGI KDPLRPGVREAVATCHAAGINVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFRNKDP DQMREIIPKIQVMARSLPLDKHTLVTNLRGMFNEVVAVTGDGTNDAPALHEADIGLAMGI AGTEVAKENADVIIMDDNFSTIINVAKWGRSVYINIQKFVQFQLTVNVVALMVNFISASF TGSAPLTIVQLLWVNLIMDTLGALALATEPPNDAMMKRPPVGRGDNFITKVMWRNIVGQS IYQLVVLGVLLLRGKSLLQINGPQADSLLNTFVFNTFVFCQVFNEVNSREMEKINVFSGI FSSWIFSAVVGVTAGFQVIMVELLGTFANTVHLSGKLWLTSVLIGSVGLVIGAILKCIPV ESGSDASDRHDGYRPIPTGPSAV

Transcript Sequence

Transcript ID	Os01t0939100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:41220037:41227329:1 gene:Os01g0939100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CA2+-ATPASE 6 description:Similar to Calmodulin-stimulated calcium-ATPase. (Os01t0939100-01)
Sequence	AAGTTTAGAGTTTTGATCCTGTCCAACTAATCGCCGGGTTAATCGGGTCTACACGCGTGA CATGCGCCGCAACGAGATTACCAAAAACCAAAACAAGCAAAGGGCGGGCGGTTCATTCAT TCACAGAAGAAGAGGGCCATCACTAGGAAAAAATCATCATGGTCGTCATGGAGGGGAGAG ACAGTATAGCCTAATCTAATCCCAGATTGCTAGTGATTAGCACGTAGATACATAGAAGCG ATCGATCGAGGACACATCGAGAAAAAGGTAAAAGGGAGATCAATTAATCGAAGAAGAGAG TTTTTGAAATATCGATCGATCTAGCTATCATCATGTCGTTCATCCGGAAGAAGTCGATGG AGTTCTTGAAGAGCTTCGAGGTGCCGGCGAAGAACCCGTCGGAGGAGGCGCAGCGCCGGT GGCGGGATGCCGTCGGCACGCTCGTCAAGAACCGCCGCCGCCGCTTCCGGATGGTACCCG ACCTCGACAAGCGCTCGCAGGCCGAGACCCAGCGCCGCAAGATCCAGGAGAAGCTTCGTG TTGCACTCTTCGTTCAGAAAGCTGCACTTCAGTTCATCGATGCCGTCCGCAAGACGGAGC ACCCGTTGCCGGAGCTCGCCCGGCAATGCGGCTTCTCCGTCAGCGCCGAGGAGCTCGCCT CCATCGTGCGCGGCCACGACACCAAGAGCCTGAGATTCCACAATGGCGTCGACGGCATCG CCCGGAAGGTGGCCGTGTCCCTCGCCGACGGCGTCAAGTCCGACGACGCCGGCCTCCGCG CCGAGGTCTACGGCGCCAACCAGTACACGGAGAAGCCGCCAAGAACGTTCTGGATGTTTC TGTGGGACGCCAGCCAGGACATGACGCTGTTGCTGCTCGCCTTCTGCGCCGCCGTCTCCG TCGCCATCGGCCTTGCCACCGAGGGGTGGCCGAGCGGCATGTACGACGGCGTCGGCATCA TGCTCACCATCCTCCTCGTCGTCATGATCACCGCGGCGAGCGACTACAAGCAGTCGCTGC AGTTCAGGGACCTGGACAAGGAGAAGAAGAAGATCGACGTGCAGGTCACCCGCGACGGCT ACCGGCAGAAGGTGTCCATCTACGACATCGTCGTCGGCGACATCGTGCATCTGTCCATCG GCGACCAGGTCCCCGCCGACGGGTTGTTCATTGATGGATACTCGTTCGTCGTCGACGAGT CGAACCTCTCCGGCGAGAGCGAGCCGGTGCACGTGTCGACGGCGAACCGGTTCTTGCTCG GAGGGACCAAGGTGCAGGACGGGTCGGCGAGGATGCTGGTGACGGCGGTGGGGATGCGGA CGGAGTGGGGGAACCTGATGGAGACGCTGAGCCAGGGCGGCGAGGACGAGACGCCGCTGC AGGTGAAGCTCAACGGCGTGGCCACCATCATCGGCAAGATCGGGCTGGCGTTCGCGGTGC TCACGTTCACGGTGCTCATGGCGAGGTTCCTGCTCGGCAAGGCGGGCGCGCCGGGCGGGC TGCTGCGGTGGCGGATGGTGGACGCGCTCGCGGTGCTCAACTTCTTCGCCGTCGCCGTCA CCATCATCGTCGTGGCCGTGCCGGAGGGGCTCCCGCTCGCCGTCACGCTCAGCCTCGCGT TCGCCATGAAGAAGCTGATGCAGGAGCGCGCGCTCGTGCGCCACCTCTCAGCGTGCGAGA CGATGGGGTCGGCGAGCTGCATCTGCACGGACAAGACCGGCACGCTCACCACCAACCACA TGGTCGTCGAGAAGATCTGGGCGTCCGGCGCCGCGCAGACGATGAGCAACGCCAAGGGAT TCGACCAGCTCACCTCGTCGATGTCCGAGACCTTCGCCAAGGTGCTCCTCGAGGGCGTCT TCCATTGCTCCGGCTCCGAGGTCGTCCGTGGCAAGGACGGCAGGCACACCATCATGGGCA CGCCCACCGAGACGGCCATCCTCGAGTTCGGGCTCGCGGTGGAGAAGCGCGCCAGGATCG AGCACACCGGCGCCGGGAAGCTCAAGGTGGAGCCGTTCAACTCGGTGAAGAAGACGATGG CCGTGGTGATCGCGTCCCCGAGCGCCGGCGGCCGCCCCCGCGCGTTCCTCAAGGGCGCCT CCGAGGTCGTCCTGAGCCGGTGCAGCCTCGTCCTCGACGGCACCGGGAACGTCGAGAAGC TCACGGACGCCAAGGCGAAGCGGGTGGCGAGCGCCATCGACGCGTTCGCGTGCGAGGCGC TGCGCACGCTCTGCCTCGCCTACCAGGACGTCGACGGCGGCGGCGGCGACATCCCCGGCG AAGGGTACACGCTCATCGCCGTGTTCGGCATCAAGGACCCGCTCCGCCCCGGCGTCCGGG AGGCCGTGGCGACGTGCCACGCCGCCGGCATCAACGTGCGCATGGTCACCGGCGACAACA TCAACACAGCGAAGGCGATCGCCAGGGAGTGCGGCATCCTGACCGACGACGGCATCGCCA TCGAAGGGCCCGAGTTCCGGAACAAGGATCCCGACCAGATGAGAGAGATCATACCCAAAA TCCAGGTGATGGCGAGGTCGCTGCCGTTGGACAAGCACACGCTGGTGACGAACCTGAGGG GCATGTTCAACGAGGTGGTGGCGGTGACCGGCGACGGCACCAACGACGCGCCGGCGCTGC ACGAGGCCGACATCGGCCTCGCCATGGGCATCGCTGGAACAGAGGTTGCCAAGGAGAACG CCGATGTGATCATCATGGACGACAACTTCTCGACCATCATCAACGTTGCCAAATGGGGTC GCTCCGTCTACATCAACATCCAGAAGTTCGTCCAGTTCCAGCTCACCGTCAATGTGGTCG CCCTGATGGTGAACTTCATCTCTGCGTCCTTCACAGGGAGTGCGCCGCTGACGATTGTGC AGCTGCTGTGGGTGAACCTGATCATGGACACACTGGGGGCGCTGGCGCTGGCGACAGAGC CGCCGAACGACGCGATGATGAAGAGGCCGCCGGTGGGTCGCGGCGACAACTTCATCACCA AGGTGATGTGGAGGAACATCGTCGGGCAGAGCATCTACCAGCTGGTCGTGCTCGGCGTCC TCCTCCTCAGAGGGAAGAGCCTCCTCCAGATCAATGGCCCTCAAGCTGACAGCCTACTCA ACACCTTCGTCTTCAACACCTTTGTCTTCTGCCAGGTTTTCAACGAGGTGAACAGCAGGG AGATGGAGAAGATCAACGTTTTCAGCGGCATCTTCAGCAGCTGGATCTTCTCGGCGGTGG TCGGCGTCACGGCGGGGTTCCAGGTGATCATGGTGGAGCTCCTTGGGACTTTCGCCAACA CGGTGCATCTCAGCGGGAAGCTGTGGCTGACGAGCGTGCTGATCGGGTCGGTCGGCTTGG TCATCGGCGCCATCTTGAAGTGCATCCCGGTCGAATCCGGCAGCGACGCTTCTGATCGTC ACGACGGATACCGGCCGATCCCCACCGGCCCGAGTGCGGTTTGATTTTTGCAGGCATTTT GATCATCGTTTTCTTCATAAAGAAGGAGATGAGTTTGCATGCAAACTTCGTAGTTTAACT CAGTTTTTTTTTCCTCCCGAACGGAAGACATTCAGTTTTTCACACAAACATCGTAGTTTT AACTCCTCCAAAGAGTAGGTTTTGTCATTGCGTCTTCTTTTTTCCCCTCAGATTTGGTAG TGATAATAAGTTGTCATTGTTTTGATCCAAGGGATAGAATTCAGTTAGACAAAATTGAAC TATAACAAGAGCATGTACTTGCCATTTCGTTTTTTTTTTCAATTGAGGGCATGCATGCAC CCTT