Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0937200-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:41145301:41146727:-1 gene:Os01g0937200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase aspartic, catalytic domain containing protein. (Os01t0937200-01)
Sequence

ATGGCTATGATTTCCCAAGCATTTTTTCTCGCTATCATCTTCTTCATTCTTGTGCAGTTG
CAAGCTTCTCCATCTCCTGCAATCCAAGCCTTGGTAGCTCCGATCACCAAGGACACCAAG
ACTGGGCTCCACACGCTCTCCATCTCCAACAAGAACTACCTGCTTGACCTCTCCGGACAG
CTACTGTGGTCACCGTGCTCACCCTCCCACCCCACCGTCCCGTGCTCCTCCGGCGAGTGC
GCCGCCGCGTCGGGGGCGCACAAGTCCTGCAACAACGGAGGACGCGCGTGCACCGCCCGC
CCGACGAATCCGGTGACGGGCGAACGCGCCGTCGGCGACCTCACGCTCGCTGACATCGTC
GCCAACGCCACCGACGGCAAGACGCTGACCTCCGAGGTCACCGTCCGGGGCGTCGTCTCG
TCATGCGCGCCGGGCAGCCTCCTCAGGTCGTTACCGGCCATGGCGGCCGGCGACGCGGGC
CTCGGCCGTGGCGGGGTGAGCCTGCCGACCCAGCTCTACTCGAAGCTGTCGCTTAAGCGG
CAGTTCGCCGTCTGCCTGCCGAGCACGGCGGCCGCGCCCGGCGTCGCGTTCTTCGGCGGC
GGGCCGTACAACCTGATGCCGCCGACGCTGTTCGACGCGAGCACCGTCCTCTCCTACACC
GACCTGGCCCGGAGCCCGACGAACCCCTCGGCGTACAGCATCAAGCTCCGGGGCATCGCC
ATGAACCAAGAGGCGGTCCACCTCCCTCCCGGCGCGCTCAGCCGCGGCGGCGGCGTGACG
CTCGACACGGCCGCGCCGTACACCGTCCTGCGGCGCGACGTGTACCGCCCGTTCGTCGCC
GCGTTCGCCAAGGCGACGGCGAGGATAACGCGCATGCCGAGCGTGGCCCCGTTCGAGCTC
TGCTTCAACAGCAGCGCGCTGGGGTTCACCAGGGTCGGCTACGCGGTGGCGCCGATCGAC
CTCGTGACGTCCGGCGGCCGGAACTGGACGGTGTTCGGGTCGAACTCGCTGGCGCAGGTG
GCGGGCGACACGGCGTGCTTGGCGTTCGTCGACGGCGGGAGGGCGGCGCGGAGCGCGGTG
ACCGTGGGCGCGTTCCAGATGGAGAACAACTTTTTGCTGTTCGACGAGGCCGCTTCCAGG
CTAGGGTTCAGTGGCACCCTCTTCTTCATCAGGACTACCTGTGGCAACTTCAACTTCGCA
AGAAACTAA

Peptide Sequence

PEP ID

Os01t0937200-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:41145301:41146727:-1 gene:Os01g0937200 transcript:Os01t0937200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase aspartic, catalytic domain containing protein. (Os01t0937200-01)
Sequence

MAMISQAFFLAIIFFILVQLQASPSPAIQALVAPITKDTKTGLHTLSISNKNYLLDLSGQ
LLWSPCSPSHPTVPCSSGECAAASGAHKSCNNGGRACTARPTNPVTGERAVGDLTLADIV
ANATDGKTLTSEVTVRGVVSSCAPGSLLRSLPAMAAGDAGLGRGGVSLPTQLYSKLSLKR
QFAVCLPSTAAAPGVAFFGGGPYNLMPPTLFDASTVLSYTDLARSPTNPSAYSIKLRGIA
MNQEAVHLPPGALSRGGGVTLDTAAPYTVLRRDVYRPFVAAFAKATARITRMPSVAPFEL
CFNSSALGFTRVGYAVAPIDLVTSGGRNWTVFGSNSLAQVAGDTACLAFVDGGRAARSAV
TVGAFQMENNFLLFDEAASRLGFSGTLFFIRTTCGNFNFARN

Transcript Sequence

Transcript ID

Os01t0937200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:41145301:41146727:-1 gene:Os01g0937200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase aspartic, catalytic domain containing protein. (Os01t0937200-01)
Sequence

TTGCATGTCTGTACCTTTTACATGCAACCACACAACTCAGCTACAATACCATCAAGATGG
CTATGATTTCCCAAGCATTTTTTCTCGCTATCATCTTCTTCATTCTTGTGCAGTTGCAAG
CTTCTCCATCTCCTGCAATCCAAGCCTTGGTAGCTCCGATCACCAAGGACACCAAGACTG
GGCTCCACACGCTCTCCATCTCCAACAAGAACTACCTGCTTGACCTCTCCGGACAGCTAC
TGTGGTCACCGTGCTCACCCTCCCACCCCACCGTCCCGTGCTCCTCCGGCGAGTGCGCCG
CCGCGTCGGGGGCGCACAAGTCCTGCAACAACGGAGGACGCGCGTGCACCGCCCGCCCGA
CGAATCCGGTGACGGGCGAACGCGCCGTCGGCGACCTCACGCTCGCTGACATCGTCGCCA
ACGCCACCGACGGCAAGACGCTGACCTCCGAGGTCACCGTCCGGGGCGTCGTCTCGTCAT
GCGCGCCGGGCAGCCTCCTCAGGTCGTTACCGGCCATGGCGGCCGGCGACGCGGGCCTCG
GCCGTGGCGGGGTGAGCCTGCCGACCCAGCTCTACTCGAAGCTGTCGCTTAAGCGGCAGT
TCGCCGTCTGCCTGCCGAGCACGGCGGCCGCGCCCGGCGTCGCGTTCTTCGGCGGCGGGC
CGTACAACCTGATGCCGCCGACGCTGTTCGACGCGAGCACCGTCCTCTCCTACACCGACC
TGGCCCGGAGCCCGACGAACCCCTCGGCGTACAGCATCAAGCTCCGGGGCATCGCCATGA
ACCAAGAGGCGGTCCACCTCCCTCCCGGCGCGCTCAGCCGCGGCGGCGGCGTGACGCTCG
ACACGGCCGCGCCGTACACCGTCCTGCGGCGCGACGTGTACCGCCCGTTCGTCGCCGCGT
TCGCCAAGGCGACGGCGAGGATAACGCGCATGCCGAGCGTGGCCCCGTTCGAGCTCTGCT
TCAACAGCAGCGCGCTGGGGTTCACCAGGGTCGGCTACGCGGTGGCGCCGATCGACCTCG
TGACGTCCGGCGGCCGGAACTGGACGGTGTTCGGGTCGAACTCGCTGGCGCAGGTGGCGG
GCGACACGGCGTGCTTGGCGTTCGTCGACGGCGGGAGGGCGGCGCGGAGCGCGGTGACCG
TGGGCGCGTTCCAGATGGAGAACAACTTTTTGCTGTTCGACGAGGCCGCTTCCAGGCTAG
GGTTCAGTGGCACCCTCTTCTTCATCAGGACTACCTGTGGCAACTTCAACTTCGCAAGAA
ACTAAAATGGGCTCACCGTTTGCCACTATAATTCAAATTTCAAAATAAGGATATAATTCT
CGCTTTTTTTGTTGTCAACTTGTCGTGACCATTTGTAACTTTGAATAAGAGCTTGTATTG
GTGAGACATTGGTCGCTTGAACTAAGATACAAGCATTACGATTGTGC