Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0936800-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:41117216:41122215:-1 gene:Os01g0936800 gene_biotype:protein_coding transcript_biotype:protein_coding description:PapD-like domain containing protein. (Os01t0936800-01);Similar to VAP27-2. (Os01t0936800-02)
Sequence	ATGGGCCAGGACCTCGCCGAGATCCACCCTCGCGAGCTCCAGTTCACCTTTGAGGTGAAG AAGCAAAGTTCATGTACTGTCCATCTTGTCAACAAATCCAATGAATATGTCGCATTCAAG GTTAAAACAACATCACCTAAAAGGTATTGTGTTCGACCAAACACTGGAGTCATCCTTCCA AGGTCAACATGTGATTTCACAGTTACCATGCAAGCACAACGTACTGCTCCACCAGACATG CAATTAAAAGACAAGTTTTTGGTTCAGACAACAGTTGTCCCTTATGGAACATCAGATGAG GACCTTGTTCCTTCTTATTTTTCTAAAGAAAGTGGCAGATATATCGAGGAAAGTAAATTG AGGGTTGTTCTTGTTAGTGCATCTCATCCTTTTGGAGAGCAGCCAATTAATGGAATTCCA AACACTGAGGCAGCTGTTGAGGTTCCTTCATTAAAGGACACGTTGAACATTAAGAATGAA ATTCCAGTTGCAGAGAAAGAGGTTCATTCCCCTCTGGAAGAAGACCCAGTTGTTATTCCT GCACCCCCTTACCCTGTCAAGGAGGCTCCAATTCTCAGAGAAGTTCCTGTGCATATTTCC CCTGTCAGGGAGACTTCATTCCTGAGAGAAGTTCCTGCACCCGTATCCCCAGTCAAGGAG ACTCCAATCCTGAGAGAAGTTCCTACACCATTGAAGGAGACACCTGTTATATTGACAGAA TCTCCACCCCCTCCAACAGATACCTCTTCCATTACTGTCGAATCTCTCCATCCTTTCGAA CAAAACCTAGCAAGTTTGAAGGAATCTCCTCTAGAAGAAACTCTTCCAAAAGCAGCTGTC GTGTTAAGTGAGCAAGGGGCTGTCAATGTGCAGAGTCGTCAACTATGCCATGTAACGGAA GATGTTCAGAACCTGAAGTCAAAGCTCAATGGTCTCGAAGTAAAATTGGAAGAGGCTGAA AAAATGATAATAAAGCTGAGAGAAGAGAGCAGAACTACCACCCAGGAGCGGGATAAGTTA CAGCAAGAAATGATGTTTCTACGAAAGAAGGGAACACCAAGGAATCAAGTTGGTTTCCCC TTGCTGTTTGTGGTTTATGTGGCACTTCTTGGTACTTCTCTGGGTTACCTCCTGCGCTTA TGA

Peptide Sequence

PEP ID	Os01t0936800-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:41117216:41122215:-1 gene:Os01g0936800 transcript:Os01t0936800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:PapD-like domain containing protein. (Os01t0936800-01);Similar to VAP27-2. (Os01t0936800-02)
Sequence	MGQDLAEIHPRELQFTFEVKKQSSCTVHLVNKSNEYVAFKVKTTSPKRYCVRPNTGVILP RSTCDFTVTMQAQRTAPPDMQLKDKFLVQTTVVPYGTSDEDLVPSYFSKESGRYIEESKL RVVLVSASHPFGEQPINGIPNTEAAVEVPSLKDTLNIKNEIPVAEKEVHSPLEEDPVVIP APPYPVKEAPILREVPVHISPVRETSFLREVPAPVSPVKETPILREVPTPLKETPVILTE SPPPPTDTSSITVESLHPFEQNLASLKESPLEETLPKAAVVLSEQGAVNVQSRQLCHVTE DVQNLKSKLNGLEVKLEEAEKMIIKLREESRTTTQERDKLQQEMMFLRKKGTPRNQVGFP LLFVVYVALLGTSLGYLLRL

Transcript Sequence

Transcript ID	Os01t0936800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:41117216:41122215:-1 gene:Os01g0936800 gene_biotype:protein_coding transcript_biotype:protein_coding description:PapD-like domain containing protein. (Os01t0936800-01);Similar to VAP27-2. (Os01t0936800-02)
Sequence	GTCGTCTTCGACTTCACTCCAACTCCACCTCCACCTCCACCACCCCTCTCTCGAAGCCAT CGCCGCCTGTCTCTCCTCTCCAGCTCGCCCGGTCAGAGTCCGCGGGGGATTCGATTGATT GGTAGCTAGCTAGGCTTCCGCGCGCGGCGACCCAACGTCGGTGGAGGCGGTGCTGAAGGC CGGGCGGCGTCTCGTTCGTGGTGCGGTGGAGATGGGCCAGGACCTCGCCGAGATCCACCC TCGCGAGCTCCAGTTCACCTTTGAGGTGAAGAAGCAAAGTTCATGTACTGTCCATCTTGT CAACAAATCCAATGAATATGTCGCATTCAAGGTTAAAACAACATCACCTAAAAGGTATTG TGTTCGACCAAACACTGGAGTCATCCTTCCAAGGTCAACATGTGATTTCACAGTTACCAT GCAAGCACAACGTACTGCTCCACCAGACATGCAATTAAAAGACAAGTTTTTGGTTCAGAC AACAGTTGTCCCTTATGGAACATCAGATGAGGACCTTGTTCCTTCTTATTTTTCTAAAGA AAGTGGCAGATATATCGAGGAAAGTAAATTGAGGGTTGTTCTTGTTAGTGCATCTCATCC TTTTGGAGAGCAGCCAATTAATGGAATTCCAAACACTGAGGCAGCTGTTGAGGTTCCTTC ATTAAAGGACACGTTGAACATTAAGAATGAAATTCCAGTTGCAGAGAAAGAGGTTCATTC CCCTCTGGAAGAAGACCCAGTTGTTATTCCTGCACCCCCTTACCCTGTCAAGGAGGCTCC AATTCTCAGAGAAGTTCCTGTGCATATTTCCCCTGTCAGGGAGACTTCATTCCTGAGAGA AGTTCCTGCACCCGTATCCCCAGTCAAGGAGACTCCAATCCTGAGAGAAGTTCCTACACC ATTGAAGGAGACACCTGTTATATTGACAGAATCTCCACCCCCTCCAACAGATACCTCTTC CATTACTGTCGAATCTCTCCATCCTTTCGAACAAAACCTAGCAAGTTTGAAGGAATCTCC TCTAGAAGAAACTCTTCCAAAAGCAGCTGTCGTGTTAAGTGAGCAAGGGGCTGTCAATGT GCAGAGTCGTCAACTATGCCATGTAACGGAAGATGTTCAGAACCTGAAGTCAAAGCTCAA TGGTCTCGAAGTAAAATTGGAAGAGGCTGAAAAAATGATAATAAAGCTGAGAGAAGAGAG CAGAACTACCACCCAGGAGCGGGATAAGTTACAGCAAGAAATGATGTTTCTACGAAAGAA GGGAACACCAAGGAATCAAGTTGGTTTCCCCTTGCTGTTTGTGGTTTATGTGGCACTTCT TGGTACTTCTCTGGGTTACCTCCTGCGCTTATGAGGTCAAGTTCTTCCAAAAACCCATCA GCTGGACACTTCAGTTTGTCACAAGAATTGGAGGGCAGCTACGCATCAATCTTGAAAGGG GAGCATTCCTTAGCATCGTATTTCACTAGCCATTATGGTTTTGCATATAACAAAGGTACC AATTGCCTGCGTGCATAGAACAGCTTTTACATCTGTACAGAACCGTCCAAGAGATGCTGC TGGCTCAGTAGACTAACCCGGGATTTCTTTTCTCTCCCCTCACTGGGGTTTTTATAGTGT GTTGGATTCGGTTCTTTCTTAGAATCGGTGCAGTTTTCTTCGTTGTTTTCCTTTTCACCT GGGCTGGTGTCAGTTTGAAAACTGTCAGGTTGTATTTGATTTGACATTTGTAAGGCATCA ACGAGGTACCAAAGCAGAACCATCATTATATCGTCGAGTTGCT