Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0935000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:41011330:41015063:-1 gene:Os01g0935000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:indeterminate domain 9 description:Zinc finger, C2H2-type domain containing protein. (Os01t0935000-01)
Sequence

ATGGAGGAGTTTGAGCTGCAGCAGCAGCCGTATTACAGCAAGCTGCTCCTGGGTAGCCCG
CTGGAGATCGCCAATGTCGACGACAGTGATCTGCAGCTTGTCGCCGGAGTTCCCTCGGAT
CCGCCGCCTGCGCCGCCGACGGCCGTGAAGAAGAAGAAGAAGAGAAGCCTTCCAGGGACA
CCAGACCCGAGCGCGGAGGTGGTGGCGCTGTCGCCGCGGACGCTGCTGGCGACGAACCGG
TTCGTGTGCGAGATCTGCGGCAAGGGCTTCCAGCGCGACCAGAACCTGCAGCTGCACCGG
CGAGGCCACAACCTGCCGTGGAAGCTGCGCCAGCGCGGCGGCGCTGGCGGCGGCGGCGGC
GGCGAGCCGCCGCGGAAGCGTGTGTACGTGTGCCCGGAGGCGTCGTGCGTGCACCACAGC
CCGAGCCGCGCGCTGGGCGACCTCACCGGCATCAAGAAGCACTTCTGCCGCAAGCACGGC
GAGAAGAAGTGGAAGTGCGACCGCTGCGGCAAGCGCTACGCCGTCCACTCCGACTGGAAG
GCCCACTCCAAGGTCTGCGGCACCCGCGAGTACAAGTGCGACTGCGGCACCGTCTTCTCC
AGGCGCGACAGCTTCGTGACGCACAGGGCGTTCTGCGACGCGCTGGCGCAGGAGAACAAC
AAGCTCGCGCAGCCGATGAACATGGCGGCGGTCACCTCCGCTCTGCAGGGCCAGCAGCAG
GCTCACCACCCCGTCGCCGACGACGATGACGCCGCGGGCGTCAAGAGCCCGCACCTCAAG
ATGTTCCCCGACGTCGACAACATCGTCGCCGCCGCCACGGCCGGAAACCCGCTCTTGCCG
CCGCCGCTTAGCATGGCGGGATGCATGCTGTCCAGCCTCGCCGCGCCATTGTCGTCTCCG
TTCCTCCCCGGGTGCAAGCTTGGCGTGGACGCGGCGCGCGACGCCGCCATGGTGTTCCCG
CCGCCGCCGCCGCCGGCCGGGTCAGCGGCGGCGATCATGTCCGCCACGGCGCTGCTGCAG
AAGGCGGCGGAGCTGGGCGCCACGACGTCGACGGGCTGCTACGGCGGCGTCGCGTTCCCG
GCCATGGGCATTGCCGGCGGTCTCGACCGGCTTCCCGCCATAGGCCATCATCTCGCGCCG
TACGACGACGTCGTCGTGCCGGCGGCGCTGCAGGGGCAGACGGCGACGCAGCTGGTCGGG
TTCGACCTGGGCGGGCTGTTGCCCGGCCAGCTCTACGGCGGCGGAGGCGGCGCGATGACG
AGGGCCATCGGGTCGCTGATGCACGGCGGCGACCAGCACGCCGGTGTGGTGGATCGCCGG
CGAGGGGAAGGCGTGCGCGTCGTGGACTACATGGGCGTTGACGACGACGACGACCACGGG
TGCTTCGATGGCGTGGGCCCCTTTGGGCCTCATATTGGCCCATGGGCCTAA

Peptide Sequence

PEP ID

Os01t0935000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:41011330:41015063:-1 gene:Os01g0935000 transcript:Os01t0935000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:indeterminate domain 9 description:Zinc finger, C2H2-type domain containing protein. (Os01t0935000-01)
Sequence

MEEFELQQQPYYSKLLLGSPLEIANVDDSDLQLVAGVPSDPPPAPPTAVKKKKKRSLPGT
PDPSAEVVALSPRTLLATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLRQRGGAGGGGG
GEPPRKRVYVCPEASCVHHSPSRALGDLTGIKKHFCRKHGEKKWKCDRCGKRYAVHSDWK
AHSKVCGTREYKCDCGTVFSRRDSFVTHRAFCDALAQENNKLAQPMNMAAVTSALQGQQQ
AHHPVADDDDAAGVKSPHLKMFPDVDNIVAAATAGNPLLPPPLSMAGCMLSSLAAPLSSP
FLPGCKLGVDAARDAAMVFPPPPPPAGSAAAIMSATALLQKAAELGATTSTGCYGGVAFP
AMGIAGGLDRLPAIGHHLAPYDDVVVPAALQGQTATQLVGFDLGGLLPGQLYGGGGGAMT
RAIGSLMHGGDQHAGVVDRRRGEGVRVVDYMGVDDDDDHGCFDGVGPFGPHIGPWA

Transcript Sequence

Transcript ID

Os01t0935000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:41011330:41015063:-1 gene:Os01g0935000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:indeterminate domain 9 description:Zinc finger, C2H2-type domain containing protein. (Os01t0935000-01)
Sequence

TAGCTAGCTGTCACTCATACCAAGTTCAGCCAGAGAAAGAGCAAGAAACACAAGAGAAGT
TCAGTCTCTGAATGTGTGTTGCCAATTGCTGAAACTCTGCATGTGCATATGCAAACTTGA
ATCAGTTAGCTAACTGCATGACATCCATGTCGACCGGTGTTGAAAGGGATTGGATTGCAC
CGTGATCTTATCTTCTCTGAGCAACAAGAAGAGGTGGAAGAAGCAATTGATGGAGGAGTT
TGAGCTGCAGCAGCAGCCGTATTACAGCAAGCTGCTCCTGGGTAGCCCGCTGGAGATCGC
CAATGTCGACGACAGTGATCTGCAGCTTGTCGCCGGAGTTCCCTCGGATCCGCCGCCTGC
GCCGCCGACGGCCGTGAAGAAGAAGAAGAAGAGAAGCCTTCCAGGGACACCAGACCCGAG
CGCGGAGGTGGTGGCGCTGTCGCCGCGGACGCTGCTGGCGACGAACCGGTTCGTGTGCGA
GATCTGCGGCAAGGGCTTCCAGCGCGACCAGAACCTGCAGCTGCACCGGCGAGGCCACAA
CCTGCCGTGGAAGCTGCGCCAGCGCGGCGGCGCTGGCGGCGGCGGCGGCGGCGAGCCGCC
GCGGAAGCGTGTGTACGTGTGCCCGGAGGCGTCGTGCGTGCACCACAGCCCGAGCCGCGC
GCTGGGCGACCTCACCGGCATCAAGAAGCACTTCTGCCGCAAGCACGGCGAGAAGAAGTG
GAAGTGCGACCGCTGCGGCAAGCGCTACGCCGTCCACTCCGACTGGAAGGCCCACTCCAA
GGTCTGCGGCACCCGCGAGTACAAGTGCGACTGCGGCACCGTCTTCTCCAGGCGCGACAG
CTTCGTGACGCACAGGGCGTTCTGCGACGCGCTGGCGCAGGAGAACAACAAGCTCGCGCA
GCCGATGAACATGGCGGCGGTCACCTCCGCTCTGCAGGGCCAGCAGCAGGCTCACCACCC
CGTCGCCGACGACGATGACGCCGCGGGCGTCAAGAGCCCGCACCTCAAGATGTTCCCCGA
CGTCGACAACATCGTCGCCGCCGCCACGGCCGGAAACCCGCTCTTGCCGCCGCCGCTTAG
CATGGCGGGATGCATGCTGTCCAGCCTCGCCGCGCCATTGTCGTCTCCGTTCCTCCCCGG
GTGCAAGCTTGGCGTGGACGCGGCGCGCGACGCCGCCATGGTGTTCCCGCCGCCGCCGCC
GCCGGCCGGGTCAGCGGCGGCGATCATGTCCGCCACGGCGCTGCTGCAGAAGGCGGCGGA
GCTGGGCGCCACGACGTCGACGGGCTGCTACGGCGGCGTCGCGTTCCCGGCCATGGGCAT
TGCCGGCGGTCTCGACCGGCTTCCCGCCATAGGCCATCATCTCGCGCCGTACGACGACGT
CGTCGTGCCGGCGGCGCTGCAGGGGCAGACGGCGACGCAGCTGGTCGGGTTCGACCTGGG
CGGGCTGTTGCCCGGCCAGCTCTACGGCGGCGGAGGCGGCGCGATGACGAGGGCCATCGG
GTCGCTGATGCACGGCGGCGACCAGCACGCCGGTGTGGTGGATCGCCGGCGAGGGGAAGG
CGTGCGCGTCGTGGACTACATGGGCGTTGACGACGACGACGACCACGGGTGCTTCGATGG
CGTGGGCCCCTTTGGGCCTCATATTGGCCCATGGGCCTAATCCACTCCACTCCATGATGC
AACGCAAATGTTGTAGTGATGTACTAGTACGTATTGGAGTTTGAATCTGATGAAATGGAG
TTAACACGAGGCGAGCTTACCTTTTTTTTTATTCGTGTTGAGACAATTGTTTGAACTTCT
GCAGAAAATTTGATAGTTTAAATATTTTTTATTAGGTGAGAATAAACATATTAAATCCC