Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0930300-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:40822990:40830946:-1 gene:Os01g0930300 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-directed DNA polymerase (reverse transcriptase), related domain containing protein. (Os01t0930300-01)
Sequence

ATGTGGAGAGCTGTCACTAACAGTCTGGCAACTATGGTGAATAAGAAGAAAAGGAATCTA
GAGCAAAACTCCTTGTGTACCATCTGTGGAACAGAGGAAGAGGATGTTGCTCACGCTCTG
TGTCGTTGTCCGCATGCGAAGTACCTGTGGGAAGCCATGGGAAACACCAATGCCATCTCC
TGCAAACCGGACAGCAACTGGAAAGATTCTGACTGGATCCTTGACATTTCAGGGAGAGTT
TCAAAGGAGGAGCGCATGGGGCTCATGATGCTGCTGTGGCGAATTTGGTATGTACGTAAT
GGGATTACTCATGGAAAGGCAGCAATTCCGGTGGAGGTTTCCCAACGTTTTATCATCAGT
TATATGGCATCACTGTTGGAGATTCGACAACACCCGAATGCCAATTTGATTAAAGGGAAA
CATGTGGTTCAATATGGGTCGTCAATGCCTTTGCCAAGACAATGCAAGCCAAGTGCAGAA
TCCAGCTCTTGGATAAGACCACAGGAAGGCTGGATGAAGCTAAATGTTGATGGCTCATAT
TACCCTAGTGATGGGAAGGGAGGAACTGGCGCTGTTCTCAGGGACAGCTCTGGGAACCTA
ATTTTTGCGGCTTGTGGTGTTTTGCACAGACCGGCAAGTGCTCTGGAAGCTGAGATGGTA
GATTGTAGGGAAGGGATCAGCATGGCGCTACAATGGACGCTGCTGCCCATCATTGTGGAA
ACGGACTGCTTGGAGATGGTGCAATTGATTCACTCTGATGAGAAGGCCATGTCCGATTTG
GCATTCCTGATCAGGGAAGTTAAGCTCCTTCTTAAAGGAAATAGGGAGATTGTCATAAAA
AAAGTTAGTCGTGGTCAAAGCAGAGACTGTCATGTCTTAGCAAATAAAGGTAGATGTGAG
TCCTTAACTGCCTTTTGGCCGGATGATAATTGTAACTTTATCCCGCACGTTTTGGGTGCG
GATGAGTAA

Peptide Sequence

PEP ID

Os01t0930300-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:40822990:40830946:-1 gene:Os01g0930300 transcript:Os01t0930300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-directed DNA polymerase (reverse transcriptase), related domain containing protein. (Os01t0930300-01)
Sequence

MWRAVTNSLATMVNKKKRNLEQNSLCTICGTEEEDVAHALCRCPHAKYLWEAMGNTNAIS
CKPDSNWKDSDWILDISGRVSKEERMGLMMLLWRIWYVRNGITHGKAAIPVEVSQRFIIS
YMASLLEIRQHPNANLIKGKHVVQYGSSMPLPRQCKPSAESSSWIRPQEGWMKLNVDGSY
YPSDGKGGTGAVLRDSSGNLIFAACGVLHRPASALEAEMVDCREGISMALQWTLLPIIVE
TDCLEMVQLIHSDEKAMSDLAFLIREVKLLLKGNREIVIKKVSRGQSRDCHVLANKGRCE
SLTAFWPDDNCNFIPHVLGADE

Transcript Sequence

Transcript ID

Os01t0930300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:40822990:40830946:-1 gene:Os01g0930300 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA-directed DNA polymerase (reverse transcriptase), related domain containing protein. (Os01t0930300-01)
Sequence

TTTCGCCATTTGTTCTCGCGGCGGAGGCCAGCAACGGCGGTGCGCGCGGCGGCGGAGGCT
TGCCGCGCCGGCGGCGACCCCTCCGATTCCCTGGCGGCTCCTGGACGGCGCGACCTTCGC
CGCGAATCGGTGGAATGGAGACGCGGATTGGTGGCTTGGCAAGTCGTAGCGGAGATGGGA
TGCTGGAGCATGTGGATTGGGGTTCCTGGGCGGAATGCATAGCTGTGAATCTTGTGATCT
GCATTAACTAGTGAAGGTGGCTAAAGGGAGAAAGGCACGGTGACTTTTCTTCAGAAGCGC
GTCCTGTCACCTGTGACTTGATCCTTTCAAAGAAAGGGATTTCGATTCTCTGAAGCAAGT
CAGAGAAGCACGGCTTGGTAGTTTTGAGCTAATCTTGCTCATCCATTCGAAGACAACGTG
CTACAGTAGATGCAACTGCTACAGGTGCAGTAATGTTTGCTACAGGCAACTGATACATGA
TGGTGGCAAGTGTCAAGTGTGTGAATTCTTGAAAATTAAGGAAGACCTGCCTGACTAAGG
TGGCATGTATCTATCACCGCGTGCGATTTCCAAGGTACGCAAGTCTTCAGCTAATGGCAG
TGCACATCAATTCTACTTTGCTGCTTCTAGACTAGCGCACATCAATAGCATGCAAGACTT
TTCCATGTTCAGTTTGATCTTGCTGCGTGACGTAGCTGGTAGATTAGTGCTGATAATAGT
TCAAGCTCATCAGGAAATGAGCTTGGTAAAGCTTGGAACCAGCTTTGGAACTGTAATGTG
CCCCCAAAAGTCAAGGTGTTTATGTGGAGAGCTGTCACTAACAGTCTGGCAACTATGGTG
AATAAGAAGAAAAGGAATCTAGAGCAAAACTCCTTGTGTACCATCTGTGGAACAGAGGAA
GAGGATGTTGCTCACGCTCTGTGTCGTTGTCCGCATGCGAAGTACCTGTGGGAAGCCATG
GGAAACACCAATGCCATCTCCTGCAAACCGGACAGCAACTGGAAAGATTCTGACTGGATC
CTTGACATTTCAGGGAGAGTTTCAAAGGAGGAGCGCATGGGGCTCATGATGCTGCTGTGG
CGAATTTGGTATGTACGTAATGGGATTACTCATGGAAAGGCAGCAATTCCGGTGGAGGTT
TCCCAACGTTTTATCATCAGTTATATGGCATCACTGTTGGAGATTCGACAACACCCGAAT
GCCAATTTGATTAAAGGGAAACATGTGGTTCAATATGGGTCGTCAATGCCTTTGCCAAGA
CAATGCAAGCCAAGTGCAGAATCCAGCTCTTGGATAAGACCACAGGAAGGCTGGATGAAG
CTAAATGTTGATGGCTCATATTACCCTAGTGATGGGAAGGGAGGAACTGGCGCTGTTCTC
AGGGACAGCTCTGGGAACCTAATTTTTGCGGCTTGTGGTGTTTTGCACAGACCGGCAAGT
GCTCTGGAAGCTGAGATGGTAGATTGTAGGGAAGGGATCAGCATGGCGCTACAATGGACG
CTGCTGCCCATCATTGTGGAAACGGACTGCTTGGAGATGGTGCAATTGATTCACTCTGAT
GAGAAGGCCATGTCCGATTTGGCATTCCTGATCAGGGAAGTTAAGCTCCTTCTTAAAGGA
AATAGGGAGATTGTCATAAAAAAAGTTAGTCGTGGTCAAAGCAGAGACTGTCATGTCTTA
GCAAATAAAGGTAGATGTGAGTCCTTAACTGCCTTTTGGCCGGATGATAATTGTAACTTT
ATCCCGCACGTTTTGGGTGCGGATGAGTAATATATCTCCCTTTTCCCCGC