Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0927500-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:40679662:40683903:1 gene:Os01g0927500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein kinase-related domain containing protein. (Os01t0927500-01);Serine/threonine protein kinase-related domain containing protein. (Os01t0927500-02)
Sequence

ATGGAGATGATGGCGAGCAAGAACCCTACCAAAACCCTCCTCCTCCTGCTCCTCCTCGTC
TTCTTCCTCTCGCTGGCTTGCTCCCAGCCGCTCCACTCGGAGCCCATGTCCACCACCACC
ACCGCCACCCAGCCCGCGCCACCGCCTCCCCCGCCGCAATCCAAGATTCCCCACGCGGAG
GCCGGCGGCGCCGCCCGCCTCCGCCGCATCGTGCTCGGCGTCCTCTTCGGCTCCCTCACT
GGCTTCCTCCTCTCCCTCGCCTTCCTCTACGCCATCCGCGTCGCCATCCTCCACGCCAAG
TACGCCCCGGCAATCGTCAGGGGCCCCGTCTCCTTCACCCCGCAGATTTCCCCCAAGAAC
CTCCACTCCGCGCTCCCCTCCGCGCAGCCGCTCGCCCATGGCCCCAACGGCAAGTATTAC
AAGCTGGTTCTTGACAACGATGTCACCGTCGCCGTCAAGCGGCTCGAGGCTAGCCGCCCT
GAGGCCTCGCCGTCGTCGATGCCCAATGTTTCCAAGTCTGACATGAGGAGGGTGCAGAGG
CAGCTGGAGTTGCTAGCTCGGGTGAGGCACCAGAATGTGATGGGATTGAAGGCGTATGTC
CGGGAAGCCGACCGGCTATCGCTGGCGTACGATTTCGTGCCCGGGGGCAGCCTTGAGGAT
GTGATGAAGAGGGTGAGGTCTCTGCAGGTGAACCTCAATTGGGATGCAAGGAACAGGATT
GCGATTGGAGTGGCCAAGGGATTGAGGTACTTGCATTTTGAGTGCACCCCCCGGATACTG
CATTGCAGCCTCAAGCCGTCGAATGTGATGCTAGATGAAGATTTCGAACCGAGATTGGCA
GATTGCGGCGTTTCAAGGCTAATTGCATCAGGTTCAGCTGATCCAGAACTGGCCAGCAGC
CTTTATTCTGCCCCAGAGTGCTACCAAAGCAGCAGATACACAGATAAGAGCGATGTCTAC
AGTTTTGGCATGATCCTTGGCGTGTTGCTAACTGGGAGAGACCCAACAGATCATTTTTTC
TCGGGAGAAACCGGGCGCGGTGGATTAGCTAGATGGCTTCGGCACATGCAACAATCTGGT
GACGCAAAAGACGCACTGGATAGTAGTGTCTTAGGAGAGGAAGGGGAAGAAGATGAGATG
GTGATGGCTGTTAGGGTTGCTATCATCTGTCTCTCAGATTTACCAGCCGATCGGCCATCC
AGTGATGAACTAGTCCCCATGCTCACCCAGCTCCACAGCTTATGA

Peptide Sequence

PEP ID

Os01t0927500-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:40679662:40683903:1 gene:Os01g0927500 transcript:Os01t0927500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein kinase-related domain containing protein. (Os01t0927500-01);Serine/threonine protein kinase-related domain containing protein. (Os01t0927500-02)
Sequence

MEMMASKNPTKTLLLLLLLVFFLSLACSQPLHSEPMSTTTTATQPAPPPPPPQSKIPHAE
AGGAARLRRIVLGVLFGSLTGFLLSLAFLYAIRVAILHAKYAPAIVRGPVSFTPQISPKN
LHSALPSAQPLAHGPNGKYYKLVLDNDVTVAVKRLEASRPEASPSSMPNVSKSDMRRVQR
QLELLARVRHQNVMGLKAYVREADRLSLAYDFVPGGSLEDVMKRVRSLQVNLNWDARNRI
AIGVAKGLRYLHFECTPRILHCSLKPSNVMLDEDFEPRLADCGVSRLIASGSADPELASS
LYSAPECYQSSRYTDKSDVYSFGMILGVLLTGRDPTDHFFSGETGRGGLARWLRHMQQSG
DAKDALDSSVLGEEGEEDEMVMAVRVAIICLSDLPADRPSSDELVPMLTQLHSL

Transcript Sequence

Transcript ID

Os01t0927500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:40679662:40683903:1 gene:Os01g0927500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine protein kinase-related domain containing protein. (Os01t0927500-01);Serine/threonine protein kinase-related domain containing protein. (Os01t0927500-02)
Sequence

GTTATGTTCCGTTTCTTCCAGCTTTGGTGCTCTCTCAACTCTGAAGAAGAAGAGGTTTTC
TCTGTCTAGGAGGGAGAGATTGTGCAGCGAGGTTTCTTTCTCTCACTAGGAGGTTTGAGG
TTGCTGGGAGTGGTTACGAAGCTAATTAGGAGCTTTGCCGCTTTGGTTGAGTTTCTTGGT
GAGAGGTGAGGAGAGCGTGAGCGAGCTCGCTCTCAGTCTCACGCCTTTTGTGTTGTGTTG
TGGAGGAGGAGAAAGGAGGCGGTTTTTTGTTGTTTCTGTCAGCGTTTTCTCGTCAGGTAC
AGCCTACTATACTTCTTTCGAGTTCATATACCGTGCTGCTCTCGAATTCGGAAGCCCTTT
TTTTTCTGCTATCTTGCGAAGCTCCTGTGTGCAAAGTCGAAAAAGTTTGCCGAAGATGAA
GTCTTGCTGAAGCTGCCCTGCTTTGCAGCTGCAGTTTCTTGTCAGTTTCCATGGATGAGT
AGCATGAACAAGACGCGAGCAGAAAATGGCATCTTCAACCAGTGGAGGAACTCGAGCTCA
CCCATTTGATCCTGTTCCTTGAGCATTCTATCTCCCAAAGGAGCAATCGCTTCTCCTCTT
TCCATGGAGATGATGGCGAGCAAGAACCCTACCAAAACCCTCCTCCTCCTGCTCCTCCTC
GTCTTCTTCCTCTCGCTGGCTTGCTCCCAGCCGCTCCACTCGGAGCCCATGTCCACCACC
ACCACCGCCACCCAGCCCGCGCCACCGCCTCCCCCGCCGCAATCCAAGATTCCCCACGCG
GAGGCCGGCGGCGCCGCCCGCCTCCGCCGCATCGTGCTCGGCGTCCTCTTCGGCTCCCTC
ACTGGCTTCCTCCTCTCCCTCGCCTTCCTCTACGCCATCCGCGTCGCCATCCTCCACGCC
AAGTACGCCCCGGCAATCGTCAGGGGCCCCGTCTCCTTCACCCCGCAGATTTCCCCCAAG
AACCTCCACTCCGCGCTCCCCTCCGCGCAGCCGCTCGCCCATGGCCCCAACGGCAAGTAT
TACAAGCTGGTTCTTGACAACGATGTCACCGTCGCCGTCAAGCGGCTCGAGGCTAGCCGC
CCTGAGGCCTCGCCGTCGTCGATGCCCAATGTTTCCAAGTCTGACATGAGGAGGGTGCAG
AGGCAGCTGGAGTTGCTAGCTCGGGTGAGGCACCAGAATGTGATGGGATTGAAGGCGTAT
GTCCGGGAAGCCGACCGGCTATCGCTGGCGTACGATTTCGTGCCCGGGGGCAGCCTTGAG
GATGTGATGAAGAGGGTGAGGTCTCTGCAGGTGAACCTCAATTGGGATGCAAGGAACAGG
ATTGCGATTGGAGTGGCCAAGGGATTGAGGTACTTGCATTTTGAGTGCACCCCCCGGATA
CTGCATTGCAGCCTCAAGCCGTCGAATGTGATGCTAGATGAAGATTTCGAACCGAGATTG
GCAGATTGCGGCGTTTCAAGGCTAATTGCATCAGGTTCAGCTGATCCAGAACTGGCCAGC
AGCCTTTATTCTGCCCCAGAGTGCTACCAAAGCAGCAGATACACAGATAAGAGCGATGTC
TACAGTTTTGGCATGATCCTTGGCGTGTTGCTAACTGGGAGAGACCCAACAGATCATTTT
TTCTCGGGAGAAACCGGGCGCGGTGGATTAGCTAGATGGCTTCGGCACATGCAACAATCT
GGTGACGCAAAAGACGCACTGGATAGTAGTGTCTTAGGAGAGGAAGGGGAAGAAGATGAG
ATGGTGATGGCTGTTAGGGTTGCTATCATCTGTCTCTCAGATTTACCAGCCGATCGGCCA
TCCAGTGATGAACTAGTCCCCATGCTCACCCAGCTCCACAGCTTATGATCTCCGTCGAAC
GCTTCTTCGTAAAGTACTAATCTCTGGATGTTCTTCATCCATGGCACAGTTTCTGAATCA
TGCTGGAGGGTCAAAACTCAAAACCCTGGATGCACAAACTAGTGTAGCTTTCAGTGTATT
CCCTTGGAAGAGCCCATGCTAAATGGCCCACATGGGAGGGGAGCTAACAGTTTTCAGAGG
CCAATGTAGGAAGGAAATCTGGTAGGTCTTACTAGTTCAGTTGTCAGTTATGTTGTGTGT
TGCAGCTACATGCTGGTGGTTGAGTGAGCCTCATTGTCATGTGATGCTTCTTTGCCCTTA
CATGATTTGGAGGAGGTAGGCAAGGAAGATGTGAATATTGTGGTGTCTTTGTAGAGAGAA
AGCTGTCTTTTTCTTGGATCTATTGCAGACCTGCAGTGGTGGTGGTATGATGATGTGCTT
CTGCATTGACCGATCCATCAATTCTATCATGTACTAGCAGTACATCGGCTCCACCCCTTG
CCCATGACTTGCTGCAGGAGTGTCGGGGTCCAAACACCATTTTGATGGCATTTTTCTCTT
CAGTTCACATGCTCGCCTGTCCAACAGCATTTTGATGGCCATGTATCATGCACAGTCACA
TTTTGTGTAAAATGTAAGGGCCTGTTTGGAGAGTTTTTGGCAGCTGCGGATTCTGAGAAA
TCATAGTTGTAGAATAGTTTTCCCAACTTCTCACAATCTGAAAGTTGCTTTTCAGAATCT
AAAACTCCCCCAAATTGGCTCTGTAAATCTCCTTTGGCATGGGAAAATTTCATTGGAAAC
CTAGGAGTACTCTTCCTATGCTTAGCTTAGCATGTCTGCATGTGTAACTTGTGTTGTTGA
GCATGAGGAGAGGAGCCTACTACTAGTATGTTGACAAGAATCCAATGTGAAATGAAATTG
TGAACCTGAACAAACGTTGAGC