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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0926700-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:40633318:40634763:-1 gene:Os01g0926700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rice ortholog of Arabidopsis IRX10, IRREGULAR XYLEM10 description:Similar to secondary cell wall-related glycosyltransferase family 47. (Os01t0926700-00)
Sequence

ACAAATTGGCCTTACTGGAATAGATCAGAGGGGGCTGATCATTTCTTTGTTACACCACAT
GACTTTGGCGCTTGCTTCCACTATCAGGAAGAAAAGGCAATTGGACGTGGAATCCTCCCA
TTGCTTCAGCGTGCCACCCTGGTTCAGACCTTTGGACAAAAGAACCATGTCTGCTTGAAG
GACGGCTCGATCACCATTCCGCCATATGCACCCCCACAGAAAATGCAGGCTCATCTTATT
CCCCCAGACACCCCTCGGTCTATCTTTGTATATTTCCGTGGTCTGTTCTACGATACCAGC
AATGATCCTGAGGGTGGATACTATGCAAGAGGTGCCCGCGCGTCGGTTTGGGAGAATTTC
AAGAACAACCCGCTGTTTGACATCTCAACCGATCACCCACCCACGTACTACGAAGATATG
CAGAGATCTGTGTTCTGCTTGTGCCCATTGGGCTGGGCTCCATGGAGCCCCAGACTGGTG
GAAGCTGTGGTTTTCGGTTGTATTCCGGTGATCATTGCAGATGACATTGTCCTCCCCTTT
GCTGATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGAAG
CTGGACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTCTC
GCGAACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATGCA
TTCCATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGCGAAAACGTCTTCTTG
AAGCCCGGGGAGAGGGCCCTGAACTGGACTGCTGGACCGGTGGGCGACCTGAAGCCTTGG
TAG

Peptide Sequence

PEP ID

Os01t0926700-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:40633318:40634763:-1 gene:Os01g0926700 transcript:Os01t0926700-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rice ortholog of Arabidopsis IRX10, IRREGULAR XYLEM10 description:Similar to secondary cell wall-related glycosyltransferase family 47. (Os01t0926700-00)
Sequence

TNWPYWNRSEGADHFFVTPHDFGACFHYQEEKAIGRGILPLLQRATLVQTFGQKNHVCLK
DGSITIPPYAPPQKMQAHLIPPDTPRSIFVYFRGLFYDTSNDPEGGYYARGARASVWENF
KNNPLFDISTDHPPTYYEDMQRSVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPF
ADAIPWEEIGVFVAEEDVPKLDSILTSIPTDVILRKQRLLANPSMKQAMLFPQPAQAGDA
FHQILNGLARKLPHGENVFLKPGERALNWTAGPVGDLKPW

Transcript Sequence

Transcript ID

Os01t0926700-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:40633318:40634763:-1 gene:Os01g0926700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rice ortholog of Arabidopsis IRX10, IRREGULAR XYLEM10 description:Similar to secondary cell wall-related glycosyltransferase family 47. (Os01t0926700-00)
Sequence

CAACAAATTGGCCTTACTGGAATAGATCAGAGGGGGCTGATCATTTCTTTGTTACACCAC
ATGACTTTGGCGCTTGCTTCCACTATCAGGAAGAAAAGGCAATTGGACGTGGAATCCTCC
CATTGCTTCAGCGTGCCACCCTGGTTCAGACCTTTGGACAAAAGAACCATGTCTGCTTGA
AGGACGGCTCGATCACCATTCCGCCATATGCACCCCCACAGAAAATGCAGGCTCATCTTA
TTCCCCCAGACACCCCTCGGTCTATCTTTGTATATTTCCGTGGTCTGTTCTACGATACCA
GCAATGATCCTGAGGGTGGATACTATGCAAGAGGTGCCCGCGCGTCGGTTTGGGAGAATT
TCAAGAACAACCCGCTGTTTGACATCTCAACCGATCACCCACCCACGTACTACGAAGATA
TGCAGAGATCTGTGTTCTGCTTGTGCCCATTGGGCTGGGCTCCATGGAGCCCCAGACTGG
TGGAAGCTGTGGTTTTCGGTTGTATTCCGGTGATCATTGCAGATGACATTGTCCTCCCCT
TTGCTGATGCTATCCCCTGGGAGGAGATTGGCGTGTTTGTCGCCGAGGAGGATGTTCCGA
AGCTGGACAGTATCCTGACATCCATACCAACAGATGTTATCCTGAGGAAGCAGAGGCTTC
TCGCGAACCCGTCGATGAAGCAGGCCATGCTGTTCCCCCAGCCTGCTCAGGCAGGAGATG
CATTCCATCAGATACTGAATGGTCTCGCTCGCAAGCTTCCACATGGCGAAAACGTCTTCT
TGAAGCCCGGGGAGAGGGCCCTGAACTGGACTGCTGGACCGGTGGGCGACCTGAAGCCTT
GGTAGCATGCATCTCACTGCCTATAGAAATGTAAAAACTTTTTTGAAAAAGATATATTTA
CAGACATGATATATACTTGCGCC