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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0926400-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:40615704:40616946:-1 gene:Os01g0926400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectin-glucuronyltransferase. (Os01t0926400-01);Similar to Secondary cell wall-related glycosyltransferase family 47. (Os01t0926400-02);Similar to Pectin-glucuronyltransferase. (Os01t0926400-03)
Sequence

CGCACCCTCGACCCGGAGGAGGCCGACTGGTTCTACACACCCGCCTACACCACCTGCGAC
CTCACCCCGCAGGGCTTCCCGCTCCCCTTCCGCGCCCCGCGCATCATGCGCAGCGCCGTC
CGCTACGTCGCCGCCACGTGGCCCTACTGGAACCGCACCGACGGCGCCGACCACTTCTTC
CTCGCGCCGCACGACTTCGGCGCCTGCTTCCACTACCAGGAGGAGCGCGCCATCGAGCGC
GGCATCCTCCCGGTGCTCCGGCGCGCCACGCTGGTGCAGACGTTCGGCCAGCGCCACCAC
CCCTGCCTCCAGCCGGGGTCGATCACCGTGCCGCCGTACGCCGATCCCCGCAAGATGGAG
GCGCACCGCATCAGCCCCGCGACGCCGCGCTCGATCTTCGTGTATTTTCGGGGGCTTTTC
TACGACATGGGGAATGATCCCGAGGGCGGGTACTACGCCCGCGGCGCGAGGGCGTCGGTG
TGGGAGAACTTCAAGGACAACCCGCTGTTCGACATCTCGACGGAGCACCCGGCGACGTAC
TACGAGGACATGCAGCGGGCCATCTTCTGCCTGTGCCCGCTGGGGTGGGCGCCGTGGAGC
CCCCGGCTGGTGGAGGCGGTGGTGTTCGGGTGCATCCCGGTGATCATCGCCGACGACATC
GTGCTCCCCTTCGCGGACGCCATCCCGTGGGGGGAGATCAGCGTGTTCGTGGCGGAGGAG
GACGTGCCGAGGCTGGACACCATCCTGGCGTCCGTCCCGCTCGACGAGGTCATCCGGAAG
CAGCGGCTGCTGGCGTCCCCGGCGATGAAGCAGGCCGTGCTGTTCCACCAGCCGGCGAGG
CCCGGCGACGCGTTCCACCAGATACTCAACGGGCTCGCGCGCAAGCTGCCGCACCCCAAG
GGCGTCTTCCTCGAGCCCGGCGAGAAGGGCATCGACTGGGACCAGGGCCTCGAGAACGAC
CTCAAGCCATGGTAG

Peptide Sequence

PEP ID

Os01t0926400-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:40615704:40616946:-1 gene:Os01g0926400 transcript:Os01t0926400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectin-glucuronyltransferase. (Os01t0926400-01);Similar to Secondary cell wall-related glycosyltransferase family 47. (Os01t0926400-02);Similar to Pectin-glucuronyltransferase. (Os01t0926400-03)
Sequence

RTLDPEEADWFYTPAYTTCDLTPQGFPLPFRAPRIMRSAVRYVAATWPYWNRTDGADHFF
LAPHDFGACFHYQEERAIERGILPVLRRATLVQTFGQRHHPCLQPGSITVPPYADPRKME
AHRISPATPRSIFVYFRGLFYDMGNDPEGGYYARGARASVWENFKDNPLFDISTEHPATY
YEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWGEISVFVAEE
DVPRLDTILASVPLDEVIRKQRLLASPAMKQAVLFHQPARPGDAFHQILNGLARKLPHPK
GVFLEPGEKGIDWDQGLENDLKPW

Transcript Sequence

Transcript ID

Os01t0926400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:40615704:40616946:-1 gene:Os01g0926400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectin-glucuronyltransferase. (Os01t0926400-01);Similar to Secondary cell wall-related glycosyltransferase family 47. (Os01t0926400-02);Similar to Pectin-glucuronyltransferase. (Os01t0926400-03)
Sequence

GCGCACCCTCGACCCGGAGGAGGCCGACTGGTTCTACACACCCGCCTACACCACCTGCGA
CCTCACCCCGCAGGGCTTCCCGCTCCCCTTCCGCGCCCCGCGCATCATGCGCAGCGCCGT
CCGCTACGTCGCCGCCACGTGGCCCTACTGGAACCGCACCGACGGCGCCGACCACTTCTT
CCTCGCGCCGCACGACTTCGGCGCCTGCTTCCACTACCAGGAGGAGCGCGCCATCGAGCG
CGGCATCCTCCCGGTGCTCCGGCGCGCCACGCTGGTGCAGACGTTCGGCCAGCGCCACCA
CCCCTGCCTCCAGCCGGGGTCGATCACCGTGCCGCCGTACGCCGATCCCCGCAAGATGGA
GGCGCACCGCATCAGCCCCGCGACGCCGCGCTCGATCTTCGTGTATTTTCGGGGGCTTTT
CTACGACATGGGGAATGATCCCGAGGGCGGGTACTACGCCCGCGGCGCGAGGGCGTCGGT
GTGGGAGAACTTCAAGGACAACCCGCTGTTCGACATCTCGACGGAGCACCCGGCGACGTA
CTACGAGGACATGCAGCGGGCCATCTTCTGCCTGTGCCCGCTGGGGTGGGCGCCGTGGAG
CCCCCGGCTGGTGGAGGCGGTGGTGTTCGGGTGCATCCCGGTGATCATCGCCGACGACAT
CGTGCTCCCCTTCGCGGACGCCATCCCGTGGGGGGAGATCAGCGTGTTCGTGGCGGAGGA
GGACGTGCCGAGGCTGGACACCATCCTGGCGTCCGTCCCGCTCGACGAGGTCATCCGGAA
GCAGCGGCTGCTGGCGTCCCCGGCGATGAAGCAGGCCGTGCTGTTCCACCAGCCGGCGAG
GCCCGGCGACGCGTTCCACCAGATACTCAACGGGCTCGCGCGCAAGCTGCCGCACCCCAA
GGGCGTCTTCCTCGAGCCCGGCGAGAAGGGCATCGACTGGGACCAGGGCCTCGAGAACGA
CCTCAAGCCATGGTAGCCGCCATGGATGATGAGCTATATACACACAGATTATAGAGACGA
GACATGGATTGGATCGCGAGAGATGTACATTGATTGGTTCGTTTCTTCTGATTAAGCCGC
TGTTAATTTCTTCTTCTTTCTTTCTTTTTTCTAGTTTTTTTTCCTTGTTGTTTTTTCTTT
CAAGGAGGCGATCCGTGTTCATGTATTGTGCAATTGTGCGTGCTTAATTAATCGTTGCAA
TGTGCACGATTTCTTCTATAGTGAAATTAGCCTTTTCCCTTTT