Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0923800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:40438233:40442444:1 gene:Os01g0923800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DnaJ domain protein C14 description:Similar to Chaperone protein dnaJ. (Os01t0923800-01)
Sequence

ATGGAGTGCAACAGAGATGATGCAATTCGATCAAAGGAGATTGCTGAAAGGAAGTTCAAT
GAGAATGATATCGCTGGTGCGAAGAGGTTTGCCTTGAAAGCAAAGACTCTTTTCGACTCG
CTTGAAGGTATTGATAATATGATTTCTGCCTTGGATATCCACATAAGGGCACAGACGAAG
ATTGAAGGGGAGAATGATTTGTATGGAATATTAGATATATCGGCCTCTGATGACGATGAA
AAGATCAAGAAGCAGTACAGGAAGTTGGCCTTACAAACTCATCCTGACAAGAATAAATTT
TCTGGTGCTGAAAGTGCCTTCAAGCTCATCCAAGATGCTTGGGATGTTCTGTCTGATAAG
GACAAGAAGAGATCATATGATCAGAAGAGGTTTGGTGGTTCCTCAAGAGTATATCAGAAT
GGCTTTGCGGAAAATGCTAATGCCACTCCTGGTTCCACTATGTCAAGTATGAATGGTTTC
TTCTGGCAAAATTCTGGTAGGCACCCTTCTTATGCAACAGACACATTTTGGACATACTGT
GATTCTTGTCAAATGAGTTTTCAGTACTCCAGGGAATACGTCAACCGAAATCTGGCGTGT
AGTTTCTGCCAAACAGAATTTGTTGCTGTTGAAACTCCACCCCCAACTGCTCCAGTTTAC
TATAATGTGACCAATTTAATGGACACTAGCAGTAATATGGATGACCCACAAGGAACAGGA
GTACCTTATAGCAGCAACAAGATTTTTGATCCTGTGCTGCAGCCAGTTTTCGGTTCTGTA
GGCGGTGCACACGCCTCTAGATATCCAGTTCAACAGACATGCAAGCCTGCTAGAAAGGAG
GAGGTAGCTGAAGTTAATGTAGCCAGAAGAGAAGAGGCAACTAAAAGGAAACATGAACAA
GCAAGTTCTTCCCTTGGATCATCAAGTTCAGCTGCAAAAGTCATCCACAGAAGAAAAGCA
GTGACAAAGGAAATGGAAGCTGAAAAGAGGAGATGCATCAACAACAAAAGTAAAGTTTCT
GGTCAAAAGAACAACACAAATAAAGTTGTTGGGAAGTCAACAAGTTCTGCCGCTGATGGT
GATTCAGGTCCACAGATGCATCCAGCAAAAAGAAAATCTGCTTCTTCCATTGGAACATCA
GGAACAAAGAGGCGTAAAATGCCTTCTGATCATAATTCTGGTAATGCTAGGACTAGCTTT
GGAAAAGTGTTCCTGCAGTTGGAGACAGAGATCCCAGGCTTAAAAATGGAGAAGATGAAA
CTTCAAATTCGGGACAAACTAGAAGAATTCAAAAGTAGAAGGGCCAACGTAGAAAATAAA
GGAAACGTGCATGTGAGTTTAGAAAAAAAGAAGACATGGAAGTGGAAGAAACCTGCAACA
CTCTTTGTATACACAAGGAGAAACCGTAAGGAACACAGGAAAGAGCCTGGAGTGGATGCC
ATTGGTGCTGGTTCTTCTCACAAGCATTTGGATGGCAAATATAGTTGCTTGGATCAAGTG
CCATCTTCTGATGAAGGATCTTGTGTAATGCCGGTCCCCGAAGCAGATTTCTACACTTTT
GGTGATCATCCTGAAACTTCTTTTCAAAATGGCCAAATATGGGCTGCATATGATGAAGAA
GATGGTATGCCACGCTACTATGCTTTGATTCAGAAGGTGCTCTCGAGACATCCTTTTAAA
GTTAGACTGGCTTTCCTCAAAGCAAAGGACTGCAGTGAATTTGTAACTTCAAATTGGATC
TCATATGGTTACTCCAAGACCTGTGGTGATTTCATAGTTGGTACGCCAAAAAATACTGAC
CAACTGAATACATTTTCTCATGTTGTCACATGGGAGAAAGGCCCAGGTGGTATCATCAGA
ATTTTTCCCAGGAAAGGTGATATCTGGGCCCTATATCAGAACTGGTCTCCTGAATGGAAT
ACATGTACACCTGATGATACCATATACAAGTATGACTTGGTCCAGGTTCTTGATAGCTAC
AACCCAAGTGCAGGCATTTCTGTCATGCCTATAGTGAAGGTTCCGGGGTTCGTTTCAGTG
TTTACGCCCCTTCTTGACCCAACGAAAAGCAGGACAATTCCGAAGGAGGAGATGCTGCGA
TTTTCTCACCAGGTGCCATTCCATGTCCTTACTGGAGAAGAAGCTAAGAATTCTCCCAAG
GGATGCTATGAATTGGATCCTGGTTCTACTCCGAAGGAACTTCTTCAAGTTGTTCCACAA
TCTGACGGCGTATAA

Peptide Sequence

PEP ID

Os01t0923800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:40438233:40442444:1 gene:Os01g0923800 transcript:Os01t0923800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DnaJ domain protein C14 description:Similar to Chaperone protein dnaJ. (Os01t0923800-01)
Sequence

MECNRDDAIRSKEIAERKFNENDIAGAKRFALKAKTLFDSLEGIDNMISALDIHIRAQTK
IEGENDLYGILDISASDDDEKIKKQYRKLALQTHPDKNKFSGAESAFKLIQDAWDVLSDK
DKKRSYDQKRFGGSSRVYQNGFAENANATPGSTMSSMNGFFWQNSGRHPSYATDTFWTYC
DSCQMSFQYSREYVNRNLACSFCQTEFVAVETPPPTAPVYYNVTNLMDTSSNMDDPQGTG
VPYSSNKIFDPVLQPVFGSVGGAHASRYPVQQTCKPARKEEVAEVNVARREEATKRKHEQ
ASSSLGSSSSAAKVIHRRKAVTKEMEAEKRRCINNKSKVSGQKNNTNKVVGKSTSSAADG
DSGPQMHPAKRKSASSIGTSGTKRRKMPSDHNSGNARTSFGKVFLQLETEIPGLKMEKMK
LQIRDKLEEFKSRRANVENKGNVHVSLEKKKTWKWKKPATLFVYTRRNRKEHRKEPGVDA
IGAGSSHKHLDGKYSCLDQVPSSDEGSCVMPVPEADFYTFGDHPETSFQNGQIWAAYDEE
DGMPRYYALIQKVLSRHPFKVRLAFLKAKDCSEFVTSNWISYGYSKTCGDFIVGTPKNTD
QLNTFSHVVTWEKGPGGIIRIFPRKGDIWALYQNWSPEWNTCTPDDTIYKYDLVQVLDSY
NPSAGISVMPIVKVPGFVSVFTPLLDPTKSRTIPKEEMLRFSHQVPFHVLTGEEAKNSPK
GCYELDPGSTPKELLQVVPQSDGV

Transcript Sequence

Transcript ID

Os01t0923800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:40438233:40442444:1 gene:Os01g0923800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DnaJ domain protein C14 description:Similar to Chaperone protein dnaJ. (Os01t0923800-01)
Sequence

GTCTCGTCTCCTTCCTCGGCTCGGCATTTTCGCGAAATCCGCAACAAAATCCACGGCGGC
AACGAAGCCCGGGGGCGGGGGGACCCTACAGCGCAGCCGCACAGAGAAGGGGAAGGAAGC
CTACTACTCTACTAGTCCTACCCCTACCCTACCCTACGGCCTAGGGGGAGGGGGGGAGGA
GAGAATCCACCAAGTGAAGGATATGGAGTGCAACAGAGATGATGCAATTCGATCAAAGGA
GATTGCTGAAAGGAAGTTCAATGAGAATGATATCGCTGGTGCGAAGAGGTTTGCCTTGAA
AGCAAAGACTCTTTTCGACTCGCTTGAAGGTATTGATAATATGATTTCTGCCTTGGATAT
CCACATAAGGGCACAGACGAAGATTGAAGGGGAGAATGATTTGTATGGAATATTAGATAT
ATCGGCCTCTGATGACGATGAAAAGATCAAGAAGCAGTACAGGAAGTTGGCCTTACAAAC
TCATCCTGACAAGAATAAATTTTCTGGTGCTGAAAGTGCCTTCAAGCTCATCCAAGATGC
TTGGGATGTTCTGTCTGATAAGGACAAGAAGAGATCATATGATCAGAAGAGGTTTGGTGG
TTCCTCAAGAGTATATCAGAATGGCTTTGCGGAAAATGCTAATGCCACTCCTGGTTCCAC
TATGTCAAGTATGAATGGTTTCTTCTGGCAAAATTCTGGTAGGCACCCTTCTTATGCAAC
AGACACATTTTGGACATACTGTGATTCTTGTCAAATGAGTTTTCAGTACTCCAGGGAATA
CGTCAACCGAAATCTGGCGTGTAGTTTCTGCCAAACAGAATTTGTTGCTGTTGAAACTCC
ACCCCCAACTGCTCCAGTTTACTATAATGTGACCAATTTAATGGACACTAGCAGTAATAT
GGATGACCCACAAGGAACAGGAGTACCTTATAGCAGCAACAAGATTTTTGATCCTGTGCT
GCAGCCAGTTTTCGGTTCTGTAGGCGGTGCACACGCCTCTAGATATCCAGTTCAACAGAC
ATGCAAGCCTGCTAGAAAGGAGGAGGTAGCTGAAGTTAATGTAGCCAGAAGAGAAGAGGC
AACTAAAAGGAAACATGAACAAGCAAGTTCTTCCCTTGGATCATCAAGTTCAGCTGCAAA
AGTCATCCACAGAAGAAAAGCAGTGACAAAGGAAATGGAAGCTGAAAAGAGGAGATGCAT
CAACAACAAAAGTAAAGTTTCTGGTCAAAAGAACAACACAAATAAAGTTGTTGGGAAGTC
AACAAGTTCTGCCGCTGATGGTGATTCAGGTCCACAGATGCATCCAGCAAAAAGAAAATC
TGCTTCTTCCATTGGAACATCAGGAACAAAGAGGCGTAAAATGCCTTCTGATCATAATTC
TGGTAATGCTAGGACTAGCTTTGGAAAAGTGTTCCTGCAGTTGGAGACAGAGATCCCAGG
CTTAAAAATGGAGAAGATGAAACTTCAAATTCGGGACAAACTAGAAGAATTCAAAAGTAG
AAGGGCCAACGTAGAAAATAAAGGAAACGTGCATGTGAGTTTAGAAAAAAAGAAGACATG
GAAGTGGAAGAAACCTGCAACACTCTTTGTATACACAAGGAGAAACCGTAAGGAACACAG
GAAAGAGCCTGGAGTGGATGCCATTGGTGCTGGTTCTTCTCACAAGCATTTGGATGGCAA
ATATAGTTGCTTGGATCAAGTGCCATCTTCTGATGAAGGATCTTGTGTAATGCCGGTCCC
CGAAGCAGATTTCTACACTTTTGGTGATCATCCTGAAACTTCTTTTCAAAATGGCCAAAT
ATGGGCTGCATATGATGAAGAAGATGGTATGCCACGCTACTATGCTTTGATTCAGAAGGT
GCTCTCGAGACATCCTTTTAAAGTTAGACTGGCTTTCCTCAAAGCAAAGGACTGCAGTGA
ATTTGTAACTTCAAATTGGATCTCATATGGTTACTCCAAGACCTGTGGTGATTTCATAGT
TGGTACGCCAAAAAATACTGACCAACTGAATACATTTTCTCATGTTGTCACATGGGAGAA
AGGCCCAGGTGGTATCATCAGAATTTTTCCCAGGAAAGGTGATATCTGGGCCCTATATCA
GAACTGGTCTCCTGAATGGAATACATGTACACCTGATGATACCATATACAAGTATGACTT
GGTCCAGGTTCTTGATAGCTACAACCCAAGTGCAGGCATTTCTGTCATGCCTATAGTGAA
GGTTCCGGGGTTCGTTTCAGTGTTTACGCCCCTTCTTGACCCAACGAAAAGCAGGACAAT
TCCGAAGGAGGAGATGCTGCGATTTTCTCACCAGGTGCCATTCCATGTCCTTACTGGAGA
AGAAGCTAAGAATTCTCCCAAGGGATGCTATGAATTGGATCCTGGTTCTACTCCGAAGGA
ACTTCTTCAAGTTGTTCCACAATCTGACGGCGTATAAAATAAGTCCCGTAGCTGATGCTG
ATGCTAGCTCTAGCTTGTACTTAGTGGCTGAACTATTTTTTCGCTTTTTTATATCCTGGA
ATCATTGGGGTAATACCGGTTTCTTTAGTATTGTACAATACTACAATACATACCCAATGC
TGTGTATGTTTTGACCTGTAAGCTCCCCATGTTGTTTTGATGTATTAGTAAACATGGCTA
TCTGTAAGTTCCTAGATATTTCTGGCCAGTTAGCCATATTATTATTTCTTGATGTTTCTC
ATCAAGAGCAGTAGAAACTTTAGAATATTGCTGACCTGTTGTTGTGCATGGAGTTGGTGA
TGGTCGTCACAGTTGGCCGAGATATTTAACTATTTGGAGGTCAAATATCTCGTTCAGGAA
AAAAGGGTGAGATGTGGAAGTATATCTCGTTCAC