Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0923600-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:40397315:40402594:1 gene:Os01g0923600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, QTL for seedling cold tolerance on chromosome 1, calmodulin-binding transcription activator description:Hypothetical conserved gene. (Os01t0923600-01);Ankyrin domain containing protein. (Os01t0923600-02);Hypothetical conserved gene. (Os01t0923600-03)
Sequence	ATGCAGCACCAGCAAGGATTTGATACACACAGGCTACACCAGGAAGTAAAATCGCGGTGG TTAAAGCCTAAAGAGGTTCTGCAGATATTGCAGAATCATGATCGGTTCATCATCACACAT AAGACTCCTCATAAGCCACCGAGTGGTGCTTGGTTTCTTTTCAACCGTAGAGTTCTTCGG TACTTCAGAAATGATGGGTATGAATGGCGAAAAAAGAAGAATGGGAAGACTATTGCTGAA GCCCATGAGCGCCTTAAGGTTGATAATGTTGATGCACTGAATTGCTACTATGCACACGCA GACAAAAACTCTACATTTCAGAGGCGTATATATTGGATGCTTGATCCGGCTTATGATCAC ATAGTTTTTGTCCACTACAGAGATGTTCAAGAGGGCAGCATTTCAGTATCAGCACTGAAT GATTCATCAACATCCAATCAGAATGGCAGTGGTAGCAGAGCTGAGGCTCAAAGTTCACCC GGATTGACTAGCGAGCTATTTGCCCCATGTCTTAATTCATGCAGTCCAGGATCTGCGGAA GAAGTTAGTTCCCAGATTATGGCCATAAACAACGAAACAAATAGCGTTAGTCAACCTGAT TGGGTTCAACATTGTAATCAGGCAGCGCTGCGAAAACTTAAGGTGCAGCTGAGTCTGGAA GATAGGGAAGATCATGATGTCGATGCCAAAGATATTCCATCAAACAGTGAACCTATCACT GTGTATGGGATTCAGAATGAAGAACCAGGCACTTGTAGAAATCTTGCAGATGTTTTTAGT GGACTGGAGTTCAGCAAAGAAAATCATCCTGAAGAAACCGGACTCCCTTTTTCCAGCACT ATTGATGTGCTGAAAAATTCAGACACTTGGTTGGAGGAGGATCAGATTGAAGCAATTCTG CATTCAGCATCTATGATAGTGACTGAAAACCAATGGTTCAATATTCGTGAGGTTTCCCCA GAATGGTCCTATTGTTCTGAAAGTACAAAGGTTATCATTGCAGGAGACTTCCTTCGTGAT CCCTCTCATGGTTCATGGGCAATAGTATTTGGCGATGTTAAGGTACATGCAGAAATTGTT CAGCAAGGTGTCATTCGTTGCCATACTCCATGCCTTGATGCTAGAAAAGTGACAATGTAC TTGATTGATGAAAATGAGAAAGCCTGCAGTGAAGCACGACAATTCGAATTCCATAATAAG CCTACCAAAAGTGTGGTTTGTGAGAACAGGAAACCCTGCAGAGAAGTACATGAATCTGAA CTCCATCAGAGGCCTACTGAAAGCAACAATGAGCTATTGTTGCTTTTTAACTATGCTCAG TTGCTTTTCGATGGTCATGTTTCTGAGCAATTTTTAAAGTTTGGCTTGCCATTCCCAAAT CTTGAATGCGGACTCCAAGTTAGCCCATCTGAAATTATGAAGGGGGCATCTGAGCGGCTG AACCGTGACACCGCAGTAAATTGTGTCATGGAAGTACTGCTTAACAACAAGTTTGAAGAG TGGCTGTTTTCTAAATATGAACAAAATAGTGAAGGGAATCATTTTCTCCCTAGGCAATAC CATGGTGTTATACATACAATTGCTGCCTTGGGGTACAACTGGGCTTTGAAACTTCTGCTT AATTCAGGTGTACTTGTAAACTACCGTGATGCAAATGGATGGACTGCTTTACATTGGGCT GCACGATTTGGCAGGGAAGAGACGGTAGTGCTCCTTCTTGATGCAGGTGCCGCAGCTGGT GCACTGTCAGACCCAACAGCACAAGATCCTGCTGCCAAAACACCTGCTTCAGTAGCTTCT GCATATGGTTTCAAGGGCCTTTCTGCGTATCTTTCAGAAGCAGAACTAATAGCTCATCTT CATTCTCTCGAATCAAAAGAAAACGGGTCTTCTGGAGATCAAATATCAAGAGTTGTGGGC AGAATATCAGACACATCTGCCCATGCACAAAGTGGTAGCGATGATCAGCTTGCACTGAAG GAATCCCTAGGAGCTATGCGATATGCTGTTCAAGCTGCCGGGCGCATACAAACTGCCTTC CGTATTTTTTCCTTCAGGAAGAAACAACAAGCAGGTCTTCAGAATAGAGGTAACCACATT ATATCCATTCGTGAGGTAGGTGCTGCTTCACACGGTATGCTTGAGAAAGCCGCGTTATCT ATCCAGAAGAACTTCAGGTGCTGGAAGAAACGCAAAGAATTTCTGAAAATACGCAAAAAT GTCATCAAGATACAGGCGCGTGTCAGAGCTCATCAACAACATAACAAGTACAAGGAGTTA CTTCGAAGTGTGGGCATCCTTGAGAAGGTCATGCTTAGATGGTACCGAAAGGGTGTTGGT TTACGAGGATTCCACCCTGGGGCAATAGCAATGCCAATCGATGAAGAGGACGAAGATGAC GTAGCCAAGGTTTTCCGGAAGCAAAGAGTGGAAACAGCTCTCAACAAAGCTGTTTCAAGG GTATCATCGATCATCGACAGTCCTGTCGCGAGACAGCAATACCGAAGGATGCTCAAAATG CACAAACAAAACAAGG

Peptide Sequence

PEP ID	Os01t0923600-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:40397315:40402594:1 gene:Os01g0923600 transcript:Os01t0923600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, QTL for seedling cold tolerance on chromosome 1, calmodulin-binding transcription activator description:Hypothetical conserved gene. (Os01t0923600-01);Ankyrin domain containing protein. (Os01t0923600-02);Hypothetical conserved gene. (Os01t0923600-03)
Sequence	MQHQQGFDTHRLHQEVKSRWLKPKEVLQILQNHDRFIITHKTPHKPPSGAWFLFNRRVLR YFRNDGYEWRKKKNGKTIAEAHERLKVDNVDALNCYYAHADKNSTFQRRIYWMLDPAYDH IVFVHYRDVQEGSISVSALNDSSTSNQNGSGSRAEAQSSPGLTSELFAPCLNSCSPGSAE EVSSQIMAINNETNSVSQPDWVQHCNQAALRKLKVQLSLEDREDHDVDAKDIPSNSEPIT VYGIQNEEPGTCRNLADVFSGLEFSKENHPEETGLPFSSTIDVLKNSDTWLEEDQIEAIL HSASMIVTENQWFNIREVSPEWSYCSESTKVIIAGDFLRDPSHGSWAIVFGDVKVHAEIV QQGVIRCHTPCLDARKVTMYLIDENEKACSEARQFEFHNKPTKSVVCENRKPCREVHESE LHQRPTESNNELLLLFNYAQLLFDGHVSEQFLKFGLPFPNLECGLQVSPSEIMKGASERL NRDTAVNCVMEVLLNNKFEEWLFSKYEQNSEGNHFLPRQYHGVIHTIAALGYNWALKLLL NSGVLVNYRDANGWTALHWAARFGREETVVLLLDAGAAAGALSDPTAQDPAAKTPASVAS AYGFKGLSAYLSEAELIAHLHSLESKENGSSGDQISRVVGRISDTSAHAQSGSDDQLALK ESLGAMRYAVQAAGRIQTAFRIFSFRKKQQAGLQNRGNHIISIREVGAASHGMLEKAALS IQKNFRCWKKRKEFLKIRKNVIKIQARVRAHQQHNKYKELLRSVGILEKVMLRWYRKGVG LRGFHPGAIAMPIDEEDEDDVAKVFRKQRVETALNKAVSRVSSIIDSPVARQQYRRMLKM HKQNK

Transcript Sequence

Transcript ID	Os01t0923600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:40397315:40402594:1 gene:Os01g0923600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, QTL for seedling cold tolerance on chromosome 1, calmodulin-binding transcription activator description:Hypothetical conserved gene. (Os01t0923600-01);Ankyrin domain containing protein. (Os01t0923600-02);Hypothetical conserved gene. (Os01t0923600-03)
Sequence	CTGTGTCGCTGTGGTTCTCTGACGAAAATGCCACTCACTTTCCCCACACGCGTTCGTCAC TCCAAGCTCGATGTCTCTCCCCCGCCGCTTTGGATCAATCGTCAGCGACTCACCATTCGG CGACTCGGCCATTGACAGCGATAGTCGCACGGGTTCTTGCTTATTTGGATCCGTTCTTCC GGGGAGCGAGCTAACCGGGCGAGCGAGATGCAGCACCAGCAAGGATTTGATACACACAGG CTACACCAGGAAGTAAAATCGCGGTGGTTAAAGCCTAAAGAGGTTCTGCAGATATTGCAG AATCATGATCGGTTCATCATCACACATAAGACTCCTCATAAGCCACCGAGTGGTGCTTGG TTTCTTTTCAACCGTAGAGTTCTTCGGTACTTCAGAAATGATGGGTATGAATGGCGAAAA AAGAAGAATGGGAAGACTATTGCTGAAGCCCATGAGCGCCTTAAGGTTGATAATGTTGAT GCACTGAATTGCTACTATGCACACGCAGACAAAAACTCTACATTTCAGAGGCGTATATAT TGGATGCTTGATCCGGCTTATGATCACATAGTTTTTGTCCACTACAGAGATGTTCAAGAG GGCAGCATTTCAGTATCAGCACTGAATGATTCATCAACATCCAATCAGAATGGCAGTGGT AGCAGAGCTGAGGCTCAAAGTTCACCCGGATTGACTAGCGAGCTATTTGCCCCATGTCTT AATTCATGCAGTCCAGGATCTGCGGAAGAAGTTAGTTCCCAGATTATGGCCATAAACAAC GAAACAAATAGCGTTAGTCAACCTGATTGGGTTCAACATTGTAATCAGGCAGCGCTGCGA AAACTTAAGGTGCAGCTGAGTCTGGAAGATAGGGAAGATCATGATGTCGATGCCAAAGAT ATTCCATCAAACAGTGAACCTATCACTGTGTATGGGATTCAGAATGAAGAACCAGGCACT TGTAGAAATCTTGCAGATGTTTTTAGTGGACTGGAGTTCAGCAAAGAAAATCATCCTGAA GAAACCGGACTCCCTTTTTCCAGCACTATTGATGTGCTGAAAAATTCAGACACTTGGTTG GAGGAGGATCAGATTGAAGCAATTCTGCATTCAGCATCTATGATAGTGACTGAAAACCAA TGGTTCAATATTCGTGAGGTTTCCCCAGAATGGTCCTATTGTTCTGAAAGTACAAAGGTT ATCATTGCAGGAGACTTCCTTCGTGATCCCTCTCATGGTTCATGGGCAATAGTATTTGGC GATGTTAAGGTACATGCAGAAATTGTTCAGCAAGGTGTCATTCGTTGCCATACTCCATGC CTTGATGCTAGAAAAGTGACAATGTACTTGATTGATGAAAATGAGAAAGCCTGCAGTGAA GCACGACAATTCGAATTCCATAATAAGCCTACCAAAAGTGTGGTTTGTGAGAACAGGAAA CCCTGCAGAGAAGTACATGAATCTGAACTCCATCAGAGGCCTACTGAAAGCAACAATGAG CTATTGTTGCTTTTTAACTATGCTCAGTTGCTTTTCGATGGTCATGTTTCTGAGCAATTT TTAAAGTTTGGCTTGCCATTCCCAAATCTTGAATGCGGACTCCAAGTTAGCCCATCTGAA ATTATGAAGGGGGCATCTGAGCGGCTGAACCGTGACACCGCAGTAAATTGTGTCATGGAA GTACTGCTTAACAACAAGTTTGAAGAGTGGCTGTTTTCTAAATATGAACAAAATAGTGAA GGGAATCATTTTCTCCCTAGGCAATACCATGGTGTTATACATACAATTGCTGCCTTGGGG TACAACTGGGCTTTGAAACTTCTGCTTAATTCAGGTGTACTTGTAAACTACCGTGATGCA AATGGATGGACTGCTTTACATTGGGCTGCACGATTTGGCAGGGAAGAGACGGTAGTGCTC CTTCTTGATGCAGGTGCCGCAGCTGGTGCACTGTCAGACCCAACAGCACAAGATCCTGCT GCCAAAACACCTGCTTCAGTAGCTTCTGCATATGGTTTCAAGGGCCTTTCTGCGTATCTT TCAGAAGCAGAACTAATAGCTCATCTTCATTCTCTCGAATCAAAAGAAAACGGGTCTTCT GGAGATCAAATATCAAGAGTTGTGGGCAGAATATCAGACACATCTGCCCATGCACAAAGT GGTAGCGATGATCAGCTTGCACTGAAGGAATCCCTAGGAGCTATGCGATATGCTGTTCAA GCTGCCGGGCGCATACAAACTGCCTTCCGTATTTTTTCCTTCAGGAAGAAACAACAAGCA GGTCTTCAGAATAGAGGTAACCACATTATATCCATTCGTGAGGTAGGTGCTGCTTCACAC GGTATGCTTGAGAAAGCCGCGTTATCTATCCAGAAGAACTTCAGGTGCTGGAAGAAACGC AAAGAATTTCTGAAAATACGCAAAAATGTCATCAAGATACAGGCGCGTGTCAGAGCTCAT CAACAACATAACAAGTACAAGGAGTTACTTCGAAGTGTGGGCATCCTTGAGAAGGTCATG CTTAGATGGTACCGAAAGGGTGTTGGTTTACGAGGATTCCACCCTGGGGCAATAGCAATG CCAATCGATGAAGAGGACGAAGATGACGTAGCCAAGGTTTTCCGGAAGCAAAGAGTGGAA ACAGCTCTCAACAAAGCTGTTTCAAGGGTATCATCGATCATCGACAGTCCTGTCGCGAGA CAGCAATACCGAAGGATGCTCAAAATGCACAAACAAAACAAGG