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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0919500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:40115909:40120989:1 gene:Os01g0919500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0919500-01);Hypothetical conserved gene. (Os01t0919500-02)
Sequence

ATGAGCTCTCATGATTTTGCAAGAAGGGTTCCGAAGAGGCGGCGGACTAACAAGTTGCTT
TCGCAACTTCTTCCGGACCTGAACTCACTCCCAGCTGAAGGAGCTGATGATGGGGGATCA
CCTTCCAGTAGTGTGCTCGTCTCACACGCCCAGACTTCTGCTGTAGCTGTGGCTGGAACC
TCGCAGTATTTGGTGCCAGCAGTTGTTGCGGGGCCGCACATTGGAATGAGTAGTTGTCCC
ATTATCGTGGATGATATCAATGATGATGTTGTGATTTATTCTGCAAGCTCGTTCCCTCAA
GTGAGGCAGCAGGCTCCAAGGACAGAACCTGTTGTGACCATAGAAGATGATTCTGAAACT
ACCCCTGGACAAGCAGGGGATGCAGTTGATGAGCATGTGGATATACTACTATCTCTGACT
CTGGGCAGGTATCCTAGGCATGGTCATCAGAGATCCTCCAACATCAGCACCAGCCCTGTG
ATACATATAATTGACACACCTAGCAATGCACTCCCTGAACCCGAGAAGGCCGTTCCGAAG
GAACCAACTTTCAATTGCCCTGTCTGCATGAACGAGCTGGTCGAACCGTCATCGACCATC
TGCGGTCACATTTTTTGCAAGCAGTGTATCAAGGCCTCAATCCAGGCTCAGAAGAAGTGC
CCTACCTGCCGGAGGAAGCTGACCATGAACAACTTCCACCGCGTGTATCTCCCTTCTGCG
GAGTAA

Peptide Sequence

PEP ID

Os01t0919500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:40115909:40120989:1 gene:Os01g0919500 transcript:Os01t0919500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0919500-01);Hypothetical conserved gene. (Os01t0919500-02)
Sequence

MSSHDFARRVPKRRRTNKLLSQLLPDLNSLPAEGADDGGSPSSSVLVSHAQTSAVAVAGT
SQYLVPAVVAGPHIGMSSCPIIVDDINDDVVIYSASSFPQVRQQAPRTEPVVTIEDDSET
TPGQAGDAVDEHVDILLSLTLGRYPRHGHQRSSNISTSPVIHIIDTPSNALPEPEKAVPK
EPTFNCPVCMNELVEPSSTICGHIFCKQCIKASIQAQKKCPTCRRKLTMNNFHRVYLPSA
E

Transcript Sequence

Transcript ID

Os01t0919500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:40115909:40120989:1 gene:Os01g0919500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0919500-01);Hypothetical conserved gene. (Os01t0919500-02)
Sequence

AGTCGTCGACCCCCGCGTCCCCCTTCCTCTGCTGGGTTCGCCCGCACGCCCGCCCGCACC
GCCGCACGCCGCCGGTCGCCCCTCCTCCCCGCCGACGCTGAGCACCGCCGGTCCCCGTCC
CGCTAGGCAGCGGCGCCGCCGTCCTCCGACCGAGCCCCTCGCCGGTTCCTGCTCCTATTG
CTCAAGCCATTAGGTTGCATCGAAACAGTATGAGCTCTCATGATTTTGCAAGAAGGGTTC
CGAAGAGGCGGCGGACTAACAAGTTGCTTTCGCAACTTCTTCCGGACCTGAACTCACTCC
CAGCTGAAGGAGCTGATGATGGGGGATCACCTTCCAGTAGTGTGCTCGTCTCACACGCCC
AGACTTCTGCTGTAGCTGTGGCTGGAACCTCGCAGTATTTGGTGCCAGCAGTTGTTGCGG
GGCCGCACATTGGAATGAGTAGTTGTCCCATTATCGTGGATGATATCAATGATGATGTTG
TGATTTATTCTGCAAGCTCGTTCCCTCAAGTGAGGCAGCAGGCTCCAAGGACAGAACCTG
TTGTGACCATAGAAGATGATTCTGAAACTACCCCTGGACAAGCAGGGGATGCAGTTGATG
AGCATGTGGATATACTACTATCTCTGACTCTGGGCAGGTATCCTAGGCATGGTCATCAGA
GATCCTCCAACATCAGCACCAGCCCTGTGATACATATAATTGACACACCTAGCAATGCAC
TCCCTGAACCCGAGAAGGCCGTTCCGAAGGAACCAACTTTCAATTGCCCTGTCTGCATGA
ACGAGCTGGTCGAACCGTCATCGACCATCTGCGGTCACATTTTTTGCAAGCAGTGTATCA
AGGCCTCAATCCAGGCTCAGAAGAAGTGCCCTACCTGCCGGAGGAAGCTGACCATGAACA
ACTTCCACCGCGTGTATCTCCCTTCTGCGGAGTAAGCCGGTTTCCACCATTCTGGAAATC
AGCGTCCCTCCTCCCACCCTGACTCTCGCCACATTGGCGTTCTGATGATTGTATCTGAAA
ATGTTTGACAGGCTTGCTAGCATACCGTTTTGCTGGAGCAGTTTTAACAGGTGTTGTACT
GTTGTTGGATCCGTTAAAAGAATACGATTGTATGTCCTGTGGAAATGATCCATGCTATTA
AAGGTCT