Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0917900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:40036041:40037441:-1 gene:Os01g0917900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0917900-01)
Sequence

ATGGAGCGGCGGCCGGAGCTGCGGCGGACGATGACGCTCTCGGAGCAGCTGTCCGCGCCC
GACCAGGCCATCCGCGACTTCCTCAAGATCCCACACGACGGCCTCGGCGGCGGCGACGGC
GAGGGAGGGAGGATCCCCGCCGCCGCGGGCGCCTCCGGTGGCGGCGGTGGCGTCGGTGGC
ATGATCAACTGGAAGCCGCTGCGTGACCGGCTCCGGCTACGCCGCGCCGCGAGCGCGTGG
ATGTCCGCGTCGCCCAAGCCCGCCGCGTCGAACAGCGGCGGCGGAGGCGGCGGCGGCGCG
ACGCTGAGCAGCAGCAACAGCGGCAGCAACCACAGCAACAAGTACAACTACTCCCCCGGC
GAGGCCGCGGCGGCGTTCTCGCGCACCTTCTCCCGCACGCGGTCGCTCCGCCCGACGCCG
ACCTTCTCGCGCGCCACCTCCACCCGCCTCGGAGCCACAGCCTTCTCCAGCGGCTCCAGG
CGCGCCGCGGTCGACGGCGGCGGCCACGCCAATGAGGACGACGACGAGGACCACACCGAC
GACGACGACGACGACGACGAAGAGGAGCAAGGCAAGGACGACGCGCCCGCGGCGCAGATG
TCGCTGATGGCGCTACTGGAGCAATCGGACAGCCAGTGGGACTCGGAGGACGAGGACGAC
CAAGGCCACGGCGGTGGCGGCGGCGGCGGGGGCAACGGCGGCGGCGGCGGCGGCGGCGGC
GCGCGCAAGAACGGCGACGGCGACGACGACGAGGACGACGGCGAGGGGCGGGAGGAGGAG
ATGGTGCACGTGTGCTGCGTGTGCATGGTGCGCCACAAGGGCGCCGCCTTCATCCCGTGC
GGCCACACCTTCTGCCGCCTCTGCTCCCGCGAGCTCTGGGTCAGCCGCGGCAACTGCCCT
CTCTGCAACGGTTTCATCCAAGAAATCCTCGACATCTTCTAA

Peptide Sequence

PEP ID

Os01t0917900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:40036041:40037441:-1 gene:Os01g0917900 transcript:Os01t0917900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0917900-01)
Sequence

MERRPELRRTMTLSEQLSAPDQAIRDFLKIPHDGLGGGDGEGGRIPAAAGASGGGGGVGG
MINWKPLRDRLRLRRAASAWMSASPKPAASNSGGGGGGGATLSSSNSGSNHSNKYNYSPG
EAAAAFSRTFSRTRSLRPTPTFSRATSTRLGATAFSSGSRRAAVDGGGHANEDDDEDHTD
DDDDDDEEEQGKDDAPAAQMSLMALLEQSDSQWDSEDEDDQGHGGGGGGGGNGGGGGGGG
ARKNGDGDDDEDDGEGREEEMVHVCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCP
LCNGFIQEILDIF

Transcript Sequence

Transcript ID

Os01t0917900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:40036041:40037441:-1 gene:Os01g0917900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0917900-01)
Sequence

GCGGCCATAAGACGCCACCTCCCCTTCCCACCACGCCATCACCACCACCACCACCACCTC
ACCGCCGCCTCGCACGCAGACGGCGAGGCTTCCGGCGCGGCGGCGGAAGAGTAGCGCGAG
CGAGCTGAGAGATGGAGCGGCGGCCGGAGCTGCGGCGGACGATGACGCTCTCGGAGCAGC
TGTCCGCGCCCGACCAGGCCATCCGCGACTTCCTCAAGATCCCACACGACGGCCTCGGCG
GCGGCGACGGCGAGGGAGGGAGGATCCCCGCCGCCGCGGGCGCCTCCGGTGGCGGCGGTG
GCGTCGGTGGCATGATCAACTGGAAGCCGCTGCGTGACCGGCTCCGGCTACGCCGCGCCG
CGAGCGCGTGGATGTCCGCGTCGCCCAAGCCCGCCGCGTCGAACAGCGGCGGCGGAGGCG
GCGGCGGCGCGACGCTGAGCAGCAGCAACAGCGGCAGCAACCACAGCAACAAGTACAACT
ACTCCCCCGGCGAGGCCGCGGCGGCGTTCTCGCGCACCTTCTCCCGCACGCGGTCGCTCC
GCCCGACGCCGACCTTCTCGCGCGCCACCTCCACCCGCCTCGGAGCCACAGCCTTCTCCA
GCGGCTCCAGGCGCGCCGCGGTCGACGGCGGCGGCCACGCCAATGAGGACGACGACGAGG
ACCACACCGACGACGACGACGACGACGACGAAGAGGAGCAAGGCAAGGACGACGCGCCCG
CGGCGCAGATGTCGCTGATGGCGCTACTGGAGCAATCGGACAGCCAGTGGGACTCGGAGG
ACGAGGACGACCAAGGCCACGGCGGTGGCGGCGGCGGCGGGGGCAACGGCGGCGGCGGCG
GCGGCGGCGGCGCGCGCAAGAACGGCGACGGCGACGACGACGAGGACGACGGCGAGGGGC
GGGAGGAGGAGATGGTGCACGTGTGCTGCGTGTGCATGGTGCGCCACAAGGGCGCCGCCT
TCATCCCGTGCGGCCACACCTTCTGCCGCCTCTGCTCCCGCGAGCTCTGGGTCAGCCGCG
GCAACTGCCCTCTCTGCAACGGTTTCATCCAAGAAATCCTCGACATCTTCTAATCATCTT
CTTCAGAATTCAGATGCAAACCAAGAAATCCTCGACATCTTCTAATCTTCTTCAGAATTC
AGATGCAGATAGAACGATCATGCAGCATGGCGGTAGTAGCTATAAGATTTGTTGGTTGGA
TTGGTTGATGGCGTACGAGTGGCCAATTCATGCGCCGCTCCGCTGAAAATTAACCTGAAA
AAAAAATTGAAACTTATAGGGGATTCGATCGATCGATTGATTTGTGTGCAAGTGCAACAT
GAAACGCTGAAAACACTTGTAATTTATTGGCGTTGCTGAAAGATAAATAATTAATAGGCG
GCACTGTCTCATTGATGAATT