Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0916200-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:39931275:39937611:-1 gene:Os01g0916200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os01t0916200-01);Clathrin/coatomer adaptor, adaptin-like, N-terminal domain containing protein. (Os01t0916200-02)
Sequence	GTCTCCCTCTTCCTCGACGAGCGCCACGACCTCGTCATCCTCGTCGTCAACACCATACAG AAGGACCTCAGGTCCGACAACTACCTCGTCGTCTGCGCCGCGCTCACCGCCGCCTGCCGC CTCATCGGGGAGGAGGCCATCCCGGCCGTGCTGCCCCAGGTCGTCGAGCTGCTCGCGCAT CCCAAGGAGGCCGTGCGGAAGAAGGCCGTCATGGCGCTCCACCGATTCTACCAGCGATCC CCCTCATCCGTCTCTCACCTTGTCTCCAACTTCCGCAAGAGGCTCTGTGATAATGATCCT GGGGTCATGGGTGCAACTTTATGCCCCCTCTATGACCTGATTTTGGAAGATCCAAATTCG TACAAGGATTTGGTTGTTAGTTTTGTTAACATCCTCAAACAAGTTGCAGAGAGGAGGCTT CCAACTTCCTATGATTACCACCAAATGCCTGCACCATTTATTCAGATTAAACTATTGAAA ATACTTGCGGTGCTGGGTAGCGGTGATAAGCAGGCAAGTGGAAATATGTACATGGTCTTG GGTGACATATTCAGGAAGGGTGACACTGCAAGCAACATTGGCAATGCAATATTGTATGAG TGCATATGCTGTATTTCATCCATATTCCCGAACGCTAAGATGCTTGATGCTGCAGCTGAA ACAACATCAAAGTTTCTGAAGAGTGATAGCCATAATCTTAAGTACATGGGCATTGATGCT CTTGGCCGGTTAATTAAAATAAATCCAGATATCGCAGAAGAGCACCAGCTGGCTGTTATT GATTGCTTAGAGGATCCTGATGACACTTTGAAACGCAAGACCTTCGAGCTTCTTTACAAG ATGACAAAATCAACAAATGTTGAAGTGATTGTTGATCGAATGATTGAGTATATGATTAAC ATCACTGATCACCATTACAAGACAGAAATTGCATCTCGTTGTGTTGAGCTAGCAGAACAA TTTGCACCTAGCAATCAGTGGTTCATCCAGACCATGAACAAAGTCTTTGAGCATGCTGGA GATCTTGTCAACATCCGAGTTGCACATAATTTAATGCGACTTATTGCTGAAGGCTTTGGA GAGGAGGATGAAGGTGCTGATAGCCAACTAAGATCGTCAGCTGTAGATTCCTATCTACGG ATTGTTGGGGAGCCAAAGCTTCCTTCTTCGTTTCTGCAGATAATATGCTGGGTTTTGGGA GAATATGGAACAGCAGATGGGAAATATTCAGCTTCATATATTATTGGGAAGCTGTATGAT GTGGCAGAGGCCCACCCAACTGATGACACTGTCAGGGCTTATGCAATCTCCGCAATTTTG AAGATCTTTGCGTTTGAAATCGCTCTTGGAAGGAAGATCGATATGCTACCCGAGTGCCAA TCGTTGATAGATGAATTGTCAGCTTCGCATTCAACAGACTTGCAGCAGCGTGCATATGAG CTACAGGCTTTGCTAGGTTTGGACAAACAGGCTGTTGAGAATGTAATGCCAGCCGATGCA AGCTGCGAAGATATTGAGATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAA GCCATTGAAAATGGTGCTGCACCCTACATTCCTGAGAGTGAACGCTCAGGAGTGGTAAGT GTTGGCAACTACAAGGCCCAGGATCAACAAGAGACATCTGCCCATGCTCTTAGATTCGAG GCCTATGAGCTACCTCCAGCAGCTTCACAGGCCAGTATTTCCCCAACTACTGACCTGGTT CCAGTTCCAGAACCAAGCTACTATAAGGAAGATCACCAAATGTCAAGATCCCAGCCATCA GGCGATTCTCTTTCTGGTGAATTTGGTCTCAAACTTCGTCTTGATGGAGTTCAGAAGAAA TGGGGGAGACCAGCCTATTCCTCCTCATCTACGCCTTCAAGTTCAACATCTAGTCAACAA GCAACCAATGGAGGCGTTAGTTCTGAGGTGGGAGGGTCAACAAGTTCACAGGCTCGGGAA TCCACATATGGTTCCAAGAGACAGCAGGCCACTGAAGTTTCAGCGGAAAAGCAACGGTTG GCTGCTTCACTCTTTGGTAAAGCTGATAGGAAGACCCAGGCTGGGCGAAAGACAGCAAAG GAGAGTTCCTCAACTGAGAAAGTAGCTACTGCTAATGCAACACCGCAGCCAGCCAAAGAG CAAGTAATCCCTTCTGCCCCACCACCTGATCTTCTGGATCTGGGAGAGCCAGTTTCATCA AGTCCTCCATTAGCTGATCCTTTCACACAGTTAGAAGGTCTTCTCGGACCAGCATCAGCC TCTCCTGTGGTTTCTGAAACCCCAGCTTCGAGCACTTCGAAAACACCAGATCTTATGTCA ATCTTTTCGGATGATGTACAAACTGGAGTGACCAGTGGATCCACAGAACCATCACTCGGG GTAAATGTGGTCGCTGCAAAGAAGGGCCCTAGCCTTCAAGATGCCTTGCAGAAGGACGCA GCGGCCCGGCAAGTTGGTGTGACGCCGACAGGGAACAACCCTATTCTATTCAAGGACTTG TTAGGCTAG

Peptide Sequence

PEP ID	Os01t0916200-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:39931275:39937611:-1 gene:Os01g0916200 transcript:Os01t0916200-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os01t0916200-01);Clathrin/coatomer adaptor, adaptin-like, N-terminal domain containing protein. (Os01t0916200-02)
Sequence	VSLFLDERHDLVILVVNTIQKDLRSDNYLVVCAALTAACRLIGEEAIPAVLPQVVELLAH PKEAVRKKAVMALHRFYQRSPSSVSHLVSNFRKRLCDNDPGVMGATLCPLYDLILEDPNS YKDLVVSFVNILKQVAERRLPTSYDYHQMPAPFIQIKLLKILAVLGSGDKQASGNMYMVL GDIFRKGDTASNIGNAILYECICCISSIFPNAKMLDAAAETTSKFLKSDSHNLKYMGIDA LGRLIKINPDIAEEHQLAVIDCLEDPDDTLKRKTFELLYKMTKSTNVEVIVDRMIEYMIN ITDHHYKTEIASRCVELAEQFAPSNQWFIQTMNKVFEHAGDLVNIRVAHNLMRLIAEGFG EEDEGADSQLRSSAVDSYLRIVGEPKLPSSFLQIICWVLGEYGTADGKYSASYIIGKLYD VAEAHPTDDTVRAYAISAILKIFAFEIALGRKIDMLPECQSLIDELSASHSTDLQQRAYE LQALLGLDKQAVENVMPADASCEDIEIDRNLSFLNGYVQQAIENGAAPYIPESERSGVVS VGNYKAQDQQETSAHALRFEAYELPPAASQASISPTTDLVPVPEPSYYKEDHQMSRSQPS GDSLSGEFGLKLRLDGVQKKWGRPAYSSSSTPSSSTSSQQATNGGVSSEVGGSTSSQARE STYGSKRQQATEVSAEKQRLAASLFGKADRKTQAGRKTAKESSSTEKVATANATPQPAKE QVIPSAPPPDLLDLGEPVSSSPPLADPFTQLEGLLGPASASPVVSETPASSTSKTPDLMS IFSDDVQTGVTSGSTEPSLGVNVVAAKKGPSLQDALQKDAAARQVGVTPTGNNPILFKDL LG

Transcript Sequence

Transcript ID	Os01t0916200-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:39931275:39937611:-1 gene:Os01g0916200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os01t0916200-01);Clathrin/coatomer adaptor, adaptin-like, N-terminal domain containing protein. (Os01t0916200-02)
Sequence	CCGTCTCCCTCTTCCTCGACGAGCGCCACGACCTCGTCATCCTCGTCGTCAACACCATAC AGAAGGACCTCAGGTCCGACAACTACCTCGTCGTCTGCGCCGCGCTCACCGCCGCCTGCC GCCTCATCGGGGAGGAGGCCATCCCGGCCGTGCTGCCCCAGGTCGTCGAGCTGCTCGCGC ATCCCAAGGAGGCCGTGCGGAAGAAGGCCGTCATGGCGCTCCACCGATTCTACCAGCGAT CCCCCTCATCCGTCTCTCACCTTGTCTCCAACTTCCGCAAGAGGCTCTGTGATAATGATC CTGGGGTCATGGGTGCAACTTTATGCCCCCTCTATGACCTGATTTTGGAAGATCCAAATT CGTACAAGGATTTGGTTGTTAGTTTTGTTAACATCCTCAAACAAGTTGCAGAGAGGAGGC TTCCAACTTCCTATGATTACCACCAAATGCCTGCACCATTTATTCAGATTAAACTATTGA AAATACTTGCGGTGCTGGGTAGCGGTGATAAGCAGGCAAGTGGAAATATGTACATGGTCT TGGGTGACATATTCAGGAAGGGTGACACTGCAAGCAACATTGGCAATGCAATATTGTATG AGTGCATATGCTGTATTTCATCCATATTCCCGAACGCTAAGATGCTTGATGCTGCAGCTG AAACAACATCAAAGTTTCTGAAGAGTGATAGCCATAATCTTAAGTACATGGGCATTGATG CTCTTGGCCGGTTAATTAAAATAAATCCAGATATCGCAGAAGAGCACCAGCTGGCTGTTA TTGATTGCTTAGAGGATCCTGATGACACTTTGAAACGCAAGACCTTCGAGCTTCTTTACA AGATGACAAAATCAACAAATGTTGAAGTGATTGTTGATCGAATGATTGAGTATATGATTA ACATCACTGATCACCATTACAAGACAGAAATTGCATCTCGTTGTGTTGAGCTAGCAGAAC AATTTGCACCTAGCAATCAGTGGTTCATCCAGACCATGAACAAAGTCTTTGAGCATGCTG GAGATCTTGTCAACATCCGAGTTGCACATAATTTAATGCGACTTATTGCTGAAGGCTTTG GAGAGGAGGATGAAGGTGCTGATAGCCAACTAAGATCGTCAGCTGTAGATTCCTATCTAC GGATTGTTGGGGAGCCAAAGCTTCCTTCTTCGTTTCTGCAGATAATATGCTGGGTTTTGG GAGAATATGGAACAGCAGATGGGAAATATTCAGCTTCATATATTATTGGGAAGCTGTATG ATGTGGCAGAGGCCCACCCAACTGATGACACTGTCAGGGCTTATGCAATCTCCGCAATTT TGAAGATCTTTGCGTTTGAAATCGCTCTTGGAAGGAAGATCGATATGCTACCCGAGTGCC AATCGTTGATAGATGAATTGTCAGCTTCGCATTCAACAGACTTGCAGCAGCGTGCATATG AGCTACAGGCTTTGCTAGGTTTGGACAAACAGGCTGTTGAGAATGTAATGCCAGCCGATG CAAGCTGCGAAGATATTGAGATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGC AAGCCATTGAAAATGGTGCTGCACCCTACATTCCTGAGAGTGAACGCTCAGGAGTGGTAA GTGTTGGCAACTACAAGGCCCAGGATCAACAAGAGACATCTGCCCATGCTCTTAGATTCG AGGCCTATGAGCTACCTCCAGCAGCTTCACAGGCCAGTATTTCCCCAACTACTGACCTGG TTCCAGTTCCAGAACCAAGCTACTATAAGGAAGATCACCAAATGTCAAGATCCCAGCCAT CAGGCGATTCTCTTTCTGGTGAATTTGGTCTCAAACTTCGTCTTGATGGAGTTCAGAAGA AATGGGGGAGACCAGCCTATTCCTCCTCATCTACGCCTTCAAGTTCAACATCTAGTCAAC AAGCAACCAATGGAGGCGTTAGTTCTGAGGTGGGAGGGTCAACAAGTTCACAGGCTCGGG AATCCACATATGGTTCCAAGAGACAGCAGGCCACTGAAGTTTCAGCGGAAAAGCAACGGT TGGCTGCTTCACTCTTTGGTAAAGCTGATAGGAAGACCCAGGCTGGGCGAAAGACAGCAA AGGAGAGTTCCTCAACTGAGAAAGTAGCTACTGCTAATGCAACACCGCAGCCAGCCAAAG AGCAAGTAATCCCTTCTGCCCCACCACCTGATCTTCTGGATCTGGGAGAGCCAGTTTCAT CAAGTCCTCCATTAGCTGATCCTTTCACACAGTTAGAAGGTCTTCTCGGACCAGCATCAG CCTCTCCTGTGGTTTCTGAAACCCCAGCTTCGAGCACTTCGAAAACACCAGATCTTATGT CAATCTTTTCGGATGATGTACAAACTGGAGTGACCAGTGGATCCACAGAACCATCACTCG GGGTAAATGTGGTCGCTGCAAAGAAGGGCCCTAGCCTTCAAGATGCCTTGCAGAAGGACG CAGCGGCCCGGCAAGTTGGTGTGACGCCGACAGGGAACAACCCTATTCTATTCAAGGACT TGTTAGGCTAGAATATACAGCATATGTTCAGCGTGCTCAAATTGGGTAAGTGGAGTTTGC CTCCAAGATGGTCTTGATTGCCTGATCGGTGAACCAGTAATGAATGATGCTGTTCGATCA GCACAGGGCACATGAGGGCATGAGGTAAATTTGGTTTTGATTCACAGGACACGACCTTTT ACCCTCCCAATTGGGAGAAGGTAGGTTTGGGATGAGATGTGGATGGTTGCGGGTCTTTTT CCTGTTGCGTTTTTCACATGGTAATTTCTTGTCGAGACTTAGTGTACATGTGTTTATTAC ATGATGTGTAATTTGTACATGATGAGACCGTGGTCCAGAAGCGTGTGCCGGCGCTTTTTT TCGGTTCATCTGGCAGGGAGTATATGTTTTGAGATTTACCCACATTGGATATACAGTAGC TGCTGGGCACTAGAAACTCGGTTGCCACTTCCTCTGAAACTGGCTGGAATAATAAAATGT AAGTTTTTTCTTCCCC