Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0914800-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:39857842:39861282:1 gene:Os01g0914800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trichome birefringence-like 39 description:Protein of unknown function DUF231, plant domain containing protein. (Os01t0914800-01)
Sequence	ATGAGTCCGCCGGGGAGGAAGGCCCCGGCCGGTGCGGGCGGGATCCGTCGGTGGCTCTCC ACCGTCGTCGTGTCGGTGGTGGCTCTTGTGCTAACCCTAGTAGTGATATCGCTATCGGTG GGCTCGTCTCTGACCGGGGCATCGCTACACGAGTACCTCTTTGTCAGACCTAGTGATTCA TCCAAGCTTACTGATGGGAACATGAATGGTACTGCCGTTGGTGTTCCATTACAAGAGGAA GTGTTGCAGGGTGGCAAGGAAGTACCCGTGGAGCACGGTGTTCAGAGTGGCGGCGTGAAT TCGAGCGAGACGGGTGAAATCGATACCAAAGTACAAGATCCAGTTGTTACCGATGATACC GCGTCAGTGCCTGATGAGAGAAATCTCCCTGTCTCATCGGATTCATCCGACAATCTTCAG AAGACTAATGAAGGTAGCTGTGATCTATACCATGGACATTGGGTTTTTGATTCTTCTGGA CCACTATACACAAACAACTCTTGCCCGATCATCACGCAGATGCAGAATTGTCAAGGAAAT GGTCGACCTGATAAGGATTATGAAAATTATAGATGGAAACCAGAACAGTGCATCCTACCA CGCTTTGATGGACCAAAGTTCCTGGAGTTGATGAGAGGCAAGACAATTGCATTTGTTGGT GATTCAGTTGCCAGAAATCAGATGGAATCCCTCCTCTGCATTCTGTGGCAGGTAGAGGCC CCAGTAAACCGTGGTAGCCGCAGGATGAGCAAGTGGATTTTTAGGTCAACCTCAACAATT ATCGTCCGCATCTGGTCGTCTTGGTTAGTGCACAGGTCAACTGAAGCTGTGGGGTTTGCT CCTAAGGGTATCGATAAGGTTTTCCTGGATATCCCGGATGAGACCTTTATGGAATTTATC CCACGTTTTGATGTGCTTGTCCTCTCCTCTGGGCACTGGTTTGCCAAACGGTCTGCTTAT ATCCTGAATGGCAATGTTGTTGGAGGGCAGCTCTGGTGGCCTCGTAAAGCTGGAAATATG CAGATCAACAATGTTGATGCTTTTGGTATATCTGTTGAGACATGCCTAACTGCTCTAGCT ACCAATCCAAATTTCACAGGTATAGCTATCGTGCGCACATATTCACCAGATCATTATGAA GGTGGGGCTTGGAATACCGGTGGATCATGCACTGGAAAGACTAAGCCCTTGGATGTGGTG GTGAGGAATGGATTCACGGACACCATGTATGGAAAGCAGGTTTCAGGGTTCACAAAAGCA GTGCAGAATTCTGGGAAACATGGTTCCAGGTTGAAATTGATGGACATCACTGAGCCCTTT GCCCTGAGGCCTGATGGGCATCCTGGTCCATATAGAAGTACTGACCCAAACAAGAAGACG CAAAGAGGTCCAGATGGAAGGCCTCCACCTCAGGATTGCCTACATTGGTGCATGCCAGGA CCTGTAGATACATGGAATGAGATGTTGCTAGAGACCATACGAAGAGAGTTCGAGGGAGTG AGAAGCTGA

Peptide Sequence

PEP ID	Os01t0914800-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:39857842:39861282:1 gene:Os01g0914800 transcript:Os01t0914800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trichome birefringence-like 39 description:Protein of unknown function DUF231, plant domain containing protein. (Os01t0914800-01)
Sequence	MSPPGRKAPAGAGGIRRWLSTVVVSVVALVLTLVVISLSVGSSLTGASLHEYLFVRPSDS SKLTDGNMNGTAVGVPLQEEVLQGGKEVPVEHGVQSGGVNSSETGEIDTKVQDPVVTDDT ASVPDERNLPVSSDSSDNLQKTNEGSCDLYHGHWVFDSSGPLYTNNSCPIITQMQNCQGN GRPDKDYENYRWKPEQCILPRFDGPKFLELMRGKTIAFVGDSVARNQMESLLCILWQVEA PVNRGSRRMSKWIFRSTSTIIVRIWSSWLVHRSTEAVGFAPKGIDKVFLDIPDETFMEFI PRFDVLVLSSGHWFAKRSAYILNGNVVGGQLWWPRKAGNMQINNVDAFGISVETCLTALA TNPNFTGIAIVRTYSPDHYEGGAWNTGGSCTGKTKPLDVVVRNGFTDTMYGKQVSGFTKA VQNSGKHGSRLKLMDITEPFALRPDGHPGPYRSTDPNKKTQRGPDGRPPPQDCLHWCMPG PVDTWNEMLLETIRREFEGVRS

Transcript Sequence

Transcript ID	Os01t0914800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:39857842:39861282:1 gene:Os01g0914800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trichome birefringence-like 39 description:Protein of unknown function DUF231, plant domain containing protein. (Os01t0914800-01)
Sequence	CTAGCAGTTCTTCCTTCCGTTCCTTCCCTCTATCTATCCTCCGCCTCGTCCTCGCCACGC GCGAAGGCGGCGTCGATCGGTTCCCCCATTTTTCTCATCGATCCCTCGTGGCCTCCTCCC CGCCGCCGCGCCACCTCGTCTCGAAGATTTCTTTGATGCGTGGTGGCAGTGGCGTTTGGA TCTTGGTGCCGCCATGAGTCCGCCGGGGAGGAAGGCCCCGGCCGGTGCGGGCGGGATCCG TCGGTGGCTCTCCACCGTCGTCGTGTCGGTGGTGGCTCTTGTGCTAACCCTAGTAGTGAT ATCGCTATCGGTGGGCTCGTCTCTGACCGGGGCATCGCTACACGAGTACCTCTTTGTCAG ACCTAGTGATTCATCCAAGCTTACTGATGGGAACATGAATGGTACTGCCGTTGGTGTTCC ATTACAAGAGGAAGTGTTGCAGGGTGGCAAGGAAGTACCCGTGGAGCACGGTGTTCAGAG TGGCGGCGTGAATTCGAGCGAGACGGGTGAAATCGATACCAAAGTACAAGATCCAGTTGT TACCGATGATACCGCGTCAGTGCCTGATGAGAGAAATCTCCCTGTCTCATCGGATTCATC CGACAATCTTCAGAAGACTAATGAAGGTAGCTGTGATCTATACCATGGACATTGGGTTTT TGATTCTTCTGGACCACTATACACAAACAACTCTTGCCCGATCATCACGCAGATGCAGAA TTGTCAAGGAAATGGTCGACCTGATAAGGATTATGAAAATTATAGATGGAAACCAGAACA GTGCATCCTACCACGCTTTGATGGACCAAAGTTCCTGGAGTTGATGAGAGGCAAGACAAT TGCATTTGTTGGTGATTCAGTTGCCAGAAATCAGATGGAATCCCTCCTCTGCATTCTGTG GCAGGTAGAGGCCCCAGTAAACCGTGGTAGCCGCAGGATGAGCAAGTGGATTTTTAGGTC AACCTCAACAATTATCGTCCGCATCTGGTCGTCTTGGTTAGTGCACAGGTCAACTGAAGC TGTGGGGTTTGCTCCTAAGGGTATCGATAAGGTTTTCCTGGATATCCCGGATGAGACCTT TATGGAATTTATCCCACGTTTTGATGTGCTTGTCCTCTCCTCTGGGCACTGGTTTGCCAA ACGGTCTGCTTATATCCTGAATGGCAATGTTGTTGGAGGGCAGCTCTGGTGGCCTCGTAA AGCTGGAAATATGCAGATCAACAATGTTGATGCTTTTGGTATATCTGTTGAGACATGCCT AACTGCTCTAGCTACCAATCCAAATTTCACAGGTATAGCTATCGTGCGCACATATTCACC AGATCATTATGAAGGTGGGGCTTGGAATACCGGTGGATCATGCACTGGAAAGACTAAGCC CTTGGATGTGGTGGTGAGGAATGGATTCACGGACACCATGTATGGAAAGCAGGTTTCAGG GTTCACAAAAGCAGTGCAGAATTCTGGGAAACATGGTTCCAGGTTGAAATTGATGGACAT CACTGAGCCCTTTGCCCTGAGGCCTGATGGGCATCCTGGTCCATATAGAAGTACTGACCC AAACAAGAAGACGCAAAGAGGTCCAGATGGAAGGCCTCCACCTCAGGATTGCCTACATTG GTGCATGCCAGGACCTGTAGATACATGGAATGAGATGTTGCTAGAGACCATACGAAGAGA GTTCGAGGGAGTGAGAAGCTGAAGAAAAACACTCATTGGCTGCTTGATTTCTATCATGTG ATACGACCTGCAAAAACTAATTAAGCTTCTAGCATTGGTGTATACCTCATTACATATCGT GTTGTTGTTCTCCCACAGATAGGAAGGAAATATAGCTTTTGGTTGGACAAAAAAACAAAT TGTAGGCATGTTGTCAACAGTCGGGATAGAAGTACAGAGGGGTAGACAGTTAGAGAGAGA GGTTATGATGGATGATACTGTGCAATTGATCTGTATCTAGTTTTTTGTCTGACACATTCT TGGAGATATGATCCGTTGACGAATTTTGTGGAACTACATATGATCTCATATCTCGAGCAC CTGTCAATCTATGAGGCAGATGCTGATTTTGGTTTATAACAGATGAAAGAGAACTTGTTC