Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0913300-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:39810307:39815206:1 gene:Os01g0913300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nitrate transporter 1.7 description:TGF-beta receptor, type I/II extracellular region family protein. (Os01t0913300-01)
Sequence

ATGGAGATCGGCGCCGTTGAGAACGGGGGTGTCGTCGGTGGTGAAGTTGTGGCAGGCAAG
AGGGGGAAGACGCCGCAAGGTTGGAAGTGCATGCCATTCATCATAGCAACTGAGACATTT
GAAAAGGTTGCGACAATTGGAGTGGTAGCAAATTTGACGGTCTATCTTGTGAAGCGCTTC
AACATTGGGCAAATTGAGGCAGCTAATATTACCAACATATTCTTCGGTACGCTTAACTTT
GCGCCATTGCTAGGCGCCTTCATCTCCGACGTCTACTTGGGAAGGTTCAAAACACTAGCC
TATGGATGCTTCGCCAGCCTCCTGGGGATGCTGGGAATGACTTTGTATGCATCACTTCCA
GCTCTCAAGCCACCGATCTGCCATGAAAAAACCCGACTAGGCGGAGGCTGCAACAGTCCA
TCAACACTCCAGCTAAGTGTGCTATACCTTTCTCTAGGCTTTCTAATTATCGGTGGAGGA
GCGATCCGGCCTTGTAGCTTGCCCTTTGGAGTAGACCAGTTTGATAAGACCGACGAAGAA
GGTCGAAAGGGACTAAACAGCTATTATAATTGGTACTATGGAACAAGTACTGCTGCCCTT
GTGTTATCTATGATTGTCATCATCTACATCCAGAACAATGTCAGCTGGCCAATAGGATTT
GGCATACCCACATTACTCATGTTTCTCGCCATTATCATGTTATTTCTGGGTACCAACCTG
TACGTCCATGTACAACCAGAGGGAAGCATATTTGCTGGAATTGCCCAGGTTTTAGTGGCT
TCATTTAAAAAGAGAAATCTCAAGCTTCCTTGTCCTCATGATATAAACCAACAAGGATTG
ATGCTCTACAACCCTCCTTCCAAGGGCAACCGCGTATTCAGATTGCCACTTACTTCCCAG
TTCAGGTTTCTGAACAAGGGTGCAATTGTAATGGGTGATGATATAAATGTTGATGGTTCT
GCAAGAAACTCTTGGGAGCTTTGCAACGTCCAACAAATAGAGGAGGTCAAATGCTTAATA
AGAATTGTGCCGGTTTGTATTTCTGGAGTCTTATGCTTTGTCGCATTGGCTCAGCAATTC
ACCTATATAATCTTGCAAACATTTACAATGGACTGTCACTTTGGGACGCACTTTGAAATC
CCAGCAGGCTCTGTTGTATCCATATCCCTTATTGCCCTAACTCTATTCATCCCCATTTAT
GACCGGATTTTAGTACCAATAGCTAGAGGATTCACTGGAGTGGAAAGTGGTATTACACTT
CTACAGAGACAGGGTATAGGATTGGCCATTTCTCCCATTTCAATGGTGGTAGCAGGACTT
GTCGAACGTAAGAGGAGGAACTCAGCCTTGTCGAATGGAGGAATATCGCCTATGTCAGTC
TTGTGGCTTGCACCCCAACTTGTTTTAATGGGTATTGCTGAGGCCTTCAATGCAGTTGGA
CAAATAGAATTCTACAATAAGCAGTTTCCAGAGAACATGCAAACCCTAGCAGGATCTCTG
TTCTTCTGTACTATAGCTGGAGCAAACTACCTGAGTACTGCTCTGGCAAACATCATGAGA
AAGGTCACGACCAGAGATGGTCACTCAAGCTGGTTAACAGACAACATTAATCTTGGCAAA
CTCGACTATTACTTCTATTTTATTGCCCTTATGGGAGTCCTGAACCTTATTTATTTTCTT
ATATGCTCACACTTCTACCAATATAAGGTAATGTCACTCCATTCTGAAGAATCCATCAAA
ATACCTACCAAGGAAGAAGAAGCCACAGAGATCGACATTGACACAGATGCACCTAGCAAA
TGA

Peptide Sequence

PEP ID

Os01t0913300-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:39810307:39815206:1 gene:Os01g0913300 transcript:Os01t0913300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nitrate transporter 1.7 description:TGF-beta receptor, type I/II extracellular region family protein. (Os01t0913300-01)
Sequence

MEIGAVENGGVVGGEVVAGKRGKTPQGWKCMPFIIATETFEKVATIGVVANLTVYLVKRF
NIGQIEAANITNIFFGTLNFAPLLGAFISDVYLGRFKTLAYGCFASLLGMLGMTLYASLP
ALKPPICHEKTRLGGGCNSPSTLQLSVLYLSLGFLIIGGGAIRPCSLPFGVDQFDKTDEE
GRKGLNSYYNWYYGTSTAALVLSMIVIIYIQNNVSWPIGFGIPTLLMFLAIIMLFLGTNL
YVHVQPEGSIFAGIAQVLVASFKKRNLKLPCPHDINQQGLMLYNPPSKGNRVFRLPLTSQ
FRFLNKGAIVMGDDINVDGSARNSWELCNVQQIEEVKCLIRIVPVCISGVLCFVALAQQF
TYIILQTFTMDCHFGTHFEIPAGSVVSISLIALTLFIPIYDRILVPIARGFTGVESGITL
LQRQGIGLAISPISMVVAGLVERKRRNSALSNGGISPMSVLWLAPQLVLMGIAEAFNAVG
QIEFYNKQFPENMQTLAGSLFFCTIAGANYLSTALANIMRKVTTRDGHSSWLTDNINLGK
LDYYFYFIALMGVLNLIYFLICSHFYQYKVMSLHSEESIKIPTKEEEATEIDIDTDAPSK

Transcript Sequence

Transcript ID

Os01t0913300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:39810307:39815206:1 gene:Os01g0913300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nitrate transporter 1.7 description:TGF-beta receptor, type I/II extracellular region family protein. (Os01t0913300-01)
Sequence

GGTGGTAGTAGCATTGCCTACTTTCACATACGCGCGGCGCCGCTGGTGCTGGCTGGCTGG
CGCGCGCACCGGCGGGCGGAGAGCGAGGTTTTTCGCCGGTGTTTTGGTTGGCCTCCGCCG
TTCCGCGCGGTGGTGGTGGTGGTGGTTGCTGTGGTAGCGAGGGTACGCTTTGGAGACGGA
GATGGAGATCGGCGCCGTTGAGAACGGGGGTGTCGTCGGTGGTGAAGTTGTGGCAGGCAA
GAGGGGGAAGACGCCGCAAGGTTGGAAGTGCATGCCATTCATCATAGCAACTGAGACATT
TGAAAAGGTTGCGACAATTGGAGTGGTAGCAAATTTGACGGTCTATCTTGTGAAGCGCTT
CAACATTGGGCAAATTGAGGCAGCTAATATTACCAACATATTCTTCGGTACGCTTAACTT
TGCGCCATTGCTAGGCGCCTTCATCTCCGACGTCTACTTGGGAAGGTTCAAAACACTAGC
CTATGGATGCTTCGCCAGCCTCCTGGGGATGCTGGGAATGACTTTGTATGCATCACTTCC
AGCTCTCAAGCCACCGATCTGCCATGAAAAAACCCGACTAGGCGGAGGCTGCAACAGTCC
ATCAACACTCCAGCTAAGTGTGCTATACCTTTCTCTAGGCTTTCTAATTATCGGTGGAGG
AGCGATCCGGCCTTGTAGCTTGCCCTTTGGAGTAGACCAGTTTGATAAGACCGACGAAGA
AGGTCGAAAGGGACTAAACAGCTATTATAATTGGTACTATGGAACAAGTACTGCTGCCCT
TGTGTTATCTATGATTGTCATCATCTACATCCAGAACAATGTCAGCTGGCCAATAGGATT
TGGCATACCCACATTACTCATGTTTCTCGCCATTATCATGTTATTTCTGGGTACCAACCT
GTACGTCCATGTACAACCAGAGGGAAGCATATTTGCTGGAATTGCCCAGGTTTTAGTGGC
TTCATTTAAAAAGAGAAATCTCAAGCTTCCTTGTCCTCATGATATAAACCAACAAGGATT
GATGCTCTACAACCCTCCTTCCAAGGGCAACCGCGTATTCAGATTGCCACTTACTTCCCA
GTTCAGGTTTCTGAACAAGGGTGCAATTGTAATGGGTGATGATATAAATGTTGATGGTTC
TGCAAGAAACTCTTGGGAGCTTTGCAACGTCCAACAAATAGAGGAGGTCAAATGCTTAAT
AAGAATTGTGCCGGTTTGTATTTCTGGAGTCTTATGCTTTGTCGCATTGGCTCAGCAATT
CACCTATATAATCTTGCAAACATTTACAATGGACTGTCACTTTGGGACGCACTTTGAAAT
CCCAGCAGGCTCTGTTGTATCCATATCCCTTATTGCCCTAACTCTATTCATCCCCATTTA
TGACCGGATTTTAGTACCAATAGCTAGAGGATTCACTGGAGTGGAAAGTGGTATTACACT
TCTACAGAGACAGGGTATAGGATTGGCCATTTCTCCCATTTCAATGGTGGTAGCAGGACT
TGTCGAACGTAAGAGGAGGAACTCAGCCTTGTCGAATGGAGGAATATCGCCTATGTCAGT
CTTGTGGCTTGCACCCCAACTTGTTTTAATGGGTATTGCTGAGGCCTTCAATGCAGTTGG
ACAAATAGAATTCTACAATAAGCAGTTTCCAGAGAACATGCAAACCCTAGCAGGATCTCT
GTTCTTCTGTACTATAGCTGGAGCAAACTACCTGAGTACTGCTCTGGCAAACATCATGAG
AAAGGTCACGACCAGAGATGGTCACTCAAGCTGGTTAACAGACAACATTAATCTTGGCAA
ACTCGACTATTACTTCTATTTTATTGCCCTTATGGGAGTCCTGAACCTTATTTATTTTCT
TATATGCTCACACTTCTACCAATATAAGGTAATGTCACTCCATTCTGAAGAATCCATCAA
AATACCTACCAAGGAAGAAGAAGCCACAGAGATCGACATTGACACAGATGCACCTAGCAA
ATGAATAGTGCAACTGCGAGTCTAATTGATCTGGCACAAGGAATATACTTTTGGACATGG
TGACATATTCAAATTCCAATTTCGAATTCACTTTAGAAGAGGCTCTAATGTTTGTAACAT
CAAACAGACCTCTGTGTCATCTTATGGATGTGACAAAAACAAGTGTACCATAGCAAGGGG
GTGACATGTTATCTAGCAAACATGAATAAAGAGTTTAAATGGCCTGTCCTGTTGTATTCG
AAGTAATGGAGTGTGAGTGATAGCTTATGAAACTTAAACAAGTCCATAATGGTTATGCGA
CAAGTAAGCACAGGTCATACACCATCTTTTTCT