Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0911700-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:39723171:39726874:-1 gene:Os01g0911700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VIVIPAROUS 1 description:Similar to Regulatory protein viviparous-1. (Os01t0911700-01);Transcription activator VP1-rice. (Os01t0911700-02)
Sequence	ATGGACGCCTCCGCCGGCTCGTCGGCGCCGCACTCGCACGGGAACCCGGGGAAGCAGGGT GGCGGCGGCGGCGGCGGCGGCGGACGGGGGAAGGCCCCGGCGGCGGAGATCAGGGGTGAG GCGGCGAGGGATGACGTCTTTTTCGCTGACGATACCTTCCCGTTGCTCCCGGACTTCCCG TGCCTTTCTTCCCCGTCAAGCTCAACCTTCTCGTCGTCGTCGTCGTCGAACTCGTCCAGC GCTTTCACCACCGCGGCGGGAGGGGGTTGCGGCGGTGAGCCGTCCGAGCCGGCCTCGGCG GCGGACGGGTTTGGTGAGCTCGCCGACATAGACCAGCTCCTCGACCTCGCGTCGCTGTCC GTCCCGTGGGAGGCCGAGCAGCCGCTGTTCCCGGACGACGTTGGCATGATGATAGAGGAC GCCATGTCCGGGCAACCGCATCAGGCGGACGACTGTACCGGCGACGGCGATACGAAGGCG GTGATGGAGGCGGCCGGGGGAGGAGACGACGCCGGCGACGCATGCATGGAGGGGAGTGAT GCGCCCGACGATCTGCCGGCGTTCTTCATGGAGTGGCTCACGAGCAACCGTGAGTACATC TCCGCCGACGACCTCCGCAGCATCCGCCTCCGCCGATCCACCATCGAGGCGGCGGCCGCG CGGCTCGGCGGCGGGCGCCAGGGCACCATGCAGCTGCTCAAGCTCATCCTCACCTGGGTG CAGAACCACCACCTCCAGAAGAAGCGCCCCCGCACGGCGATTGACGACGGCGCCGCGTCG TCGGACCCTCAGCTCCCCAGCCCCGGCGCAAACCCCGGCTACGAGTTCCCCTCCGGTGGC CAGGAGATGGGCTCCGCCGCCGCCACATCCTGGATGCCCTACCAGGCCTTCACGCCGCCA GCCGCGTACGGCGGCGACGCCATGTACCCAGGCGCCGCCGGCCCGTTCCCTTTCCAGCAG AGCTGCAGCAAGAGCAGCGTGGTCGTGAGCAGCCAGCCGTTCTCCCCGCCGACCGCGGCG GCGGCGGGCGACATGCATGCGTCGGGCGGAGGGAACATGGCCTGGCCGCAGCAATTCGCG CCGTTCCCCGTCTCCTCCACGAGCTCCTACACCATGCCGTCGGTCGTGCCACCGCCGTTC ACCGCCGGATTCCCCGGGCAGTACTCCGGCGGCCACGCCATGTGCTCTCCACGCCTCGCC GGAGTCGAGCCGTCCTCGACAAAGGAGGCCCGGAAGAAGCGGATGGCGAGGCAGCGCCGC CTCTCCTGCCTGCAGCAGCAACGTAGCCAGCAGCTCAACCTGAGCCAGATCCACATCTCC GGCCATCCACAGGAGCCCTCCCCTCGCGCCGCGCACTCGGCGCCGGTCACCCCGTCGTCG GCCGGCTGCCGGAGCTGGGGCATCTGGCCGCCGGCGGCCCAGATCATCCAGAATCCCCTA TCAAACAAGCCCAATCCTCCTCCCGCCACGTCGAAGCAGCCGAAACCCTCGCCGGAGAAA CCGAAGCCGAAGCCGCAGGCGGCGGCGACGGCCGGAGCGGAGAGCCTTCAGCGCTCGACG GCTTCAGAGAAGCGGCAGGCGAAGACGGACAAGAACCTGCGGTTCCTGCTGCAGAAGGTG CTGAAGCAGAGCGACGTCGGGAGCCTCGGCCGCATCGTGCTCCCCAAAGAAGCAGAGGTT CACCTGCCGGAGCTGAAGACGAGGGATGGTGTCTCCATCCCCATGGAAGACATCGGGACG TCTCAGGTGTGGAACATGCGGTACCGGTTTTGGCCCAACAACAAAAGCAGGATGTATCTT CTCGAAAACACAGGTGATTTTGTTCGTTCAAACGAGCTGCAGGAGGGTGATTTCATTGTG ATCTACTCCGATATCAAGTCAGGCAAATATCTGATACGTGGTGTGAAGGTGAGGCGCGCG GCGCAGGAGCAAGGCAACTCGTCGGGGGCGGTAGGTAAGCATAAGCATGGCTCGCCGGAG AAACCCGGCGTCTCGTCCAATACAAAGGCCGCCGGCGCCGAGGACGGCACCGGCGGCGAT GACAGTGCCGAAGCCGCAGCGGCGGCGGCGGCAGGCAAGGCTGACGGCGGCGGCTGCAAG GGCAAGTCCCCGCACGGCGTGCGGCGTTCTCGCCAGGAGGCCGCCGCCGCCGCCTCCATG AGCCAGATGGCGGTTAGCATCTGA

Peptide Sequence

PEP ID	Os01t0911700-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:39723171:39726874:-1 gene:Os01g0911700 transcript:Os01t0911700-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VIVIPAROUS 1 description:Similar to Regulatory protein viviparous-1. (Os01t0911700-01);Transcription activator VP1-rice. (Os01t0911700-02)
Sequence	MDASAGSSAPHSHGNPGKQGGGGGGGGGRGKAPAAEIRGEAARDDVFFADDTFPLLPDFP CLSSPSSSTFSSSSSSNSSSAFTTAAGGGCGGEPSEPASAADGFGELADIDQLLDLASLS VPWEAEQPLFPDDVGMMIEDAMSGQPHQADDCTGDGDTKAVMEAAGGGDDAGDACMEGSD APDDLPAFFMEWLTSNREYISADDLRSIRLRRSTIEAAAARLGGGRQGTMQLLKLILTWV QNHHLQKKRPRTAIDDGAASSDPQLPSPGANPGYEFPSGGQEMGSAAATSWMPYQAFTPP AAYGGDAMYPGAAGPFPFQQSCSKSSVVVSSQPFSPPTAAAAGDMHASGGGNMAWPQQFA PFPVSSTSSYTMPSVVPPPFTAGFPGQYSGGHAMCSPRLAGVEPSSTKEARKKRMARQRR LSCLQQQRSQQLNLSQIHISGHPQEPSPRAAHSAPVTPSSAGCRSWGIWPPAAQIIQNPL SNKPNPPPATSKQPKPSPEKPKPKPQAAATAGAESLQRSTASEKRQAKTDKNLRFLLQKV LKQSDVGSLGRIVLPKEAEVHLPELKTRDGVSIPMEDIGTSQVWNMRYRFWPNNKSRMYL LENTGDFVRSNELQEGDFIVIYSDIKSGKYLIRGVKVRRAAQEQGNSSGAVGKHKHGSPE KPGVSSNTKAAGAEDGTGGDDSAEAAAAAAAGKADGGGCKGKSPHGVRRSRQEAAAAASM SQMAVSI

Transcript Sequence

Transcript ID	Os01t0911700-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:39723171:39726874:-1 gene:Os01g0911700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VIVIPAROUS 1 description:Similar to Regulatory protein viviparous-1. (Os01t0911700-01);Transcription activator VP1-rice. (Os01t0911700-02)
Sequence	ATGGACGCCTCCGCCGGCTCGTCGGCGCCGCACTCGCACGGGAACCCGGGGAAGCAGGGT GGCGGCGGCGGCGGCGGCGGCGGACGGGGGAAGGCCCCGGCGGCGGAGATCAGGGGTGAG GCGGCGAGGGATGACGTCTTTTTCGCTGACGATACCTTCCCGTTGCTCCCGGACTTCCCG TGCCTTTCTTCCCCGTCAAGCTCAACCTTCTCGTCGTCGTCGTCGTCGAACTCGTCCAGC GCTTTCACCACCGCGGCGGGAGGGGGTTGCGGCGGTGAGCCGTCCGAGCCGGCCTCGGCG GCGGACGGGTTTGGTGAGCTCGCCGACATAGACCAGCTCCTCGACCTCGCGTCGCTGTCC GTCCCGTGGGAGGCCGAGCAGCCGCTGTTCCCGGACGACGTTGGCATGATGATAGAGGAC GCCATGTCCGGGCAACCGCATCAGGCGGACGACTGTACCGGCGACGGCGATACGAAGGCG GTGATGGAGGCGGCCGGGGGAGGAGACGACGCCGGCGACGCATGCATGGAGGGGAGTGAT GCGCCCGACGATCTGCCGGCGTTCTTCATGGAGTGGCTCACGAGCAACCGTGAGTACATC TCCGCCGACGACCTCCGCAGCATCCGCCTCCGCCGATCCACCATCGAGGCGGCGGCCGCG CGGCTCGGCGGCGGGCGCCAGGGCACCATGCAGCTGCTCAAGCTCATCCTCACCTGGGTG CAGAACCACCACCTCCAGAAGAAGCGCCCCCGCACGGCGATTGACGACGGCGCCGCGTCG TCGGACCCTCAGCTCCCCAGCCCCGGCGCAAACCCCGGCTACGAGTTCCCCTCCGGTGGC CAGGAGATGGGCTCCGCCGCCGCCACATCCTGGATGCCCTACCAGGCCTTCACGCCGCCA GCCGCGTACGGCGGCGACGCCATGTACCCAGGCGCCGCCGGCCCGTTCCCTTTCCAGCAG AGCTGCAGCAAGAGCAGCGTGGTCGTGAGCAGCCAGCCGTTCTCCCCGCCGACCGCGGCG GCGGCGGGCGACATGCATGCGTCGGGCGGAGGGAACATGGCCTGGCCGCAGCAATTCGCG CCGTTCCCCGTCTCCTCCACGAGCTCCTACACCATGCCGTCGGTCGTGCCACCGCCGTTC ACCGCCGGATTCCCCGGGCAGTACTCCGGCGGCCACGCCATGTGCTCTCCACGCCTCGCC GGAGTCGAGCCGTCCTCGACAAAGGAGGCCCGGAAGAAGCGGATGGCGAGGCAGCGCCGC CTCTCCTGCCTGCAGCAGCAACGTAGCCAGCAGCTCAACCTGAGCCAGATCCACATCTCC GGCCATCCACAGGAGCCCTCCCCTCGCGCCGCGCACTCGGCGCCGGTCACCCCGTCGTCG GCCGGCTGCCGGAGCTGGGGCATCTGGCCGCCGGCGGCCCAGATCATCCAGAATCCCCTA TCAAACAAGCCCAATCCTCCTCCCGCCACGTCGAAGCAGCCGAAACCCTCGCCGGAGAAA CCGAAGCCGAAGCCGCAGGCGGCGGCGACGGCCGGAGCGGAGAGCCTTCAGCGCTCGACG GCTTCAGAGAAGCGGCAGGCGAAGACGGACAAGAACCTGCGGTTCCTGCTGCAGAAGGTG CTGAAGCAGAGCGACGTCGGGAGCCTCGGCCGCATCGTGCTCCCCAAAGAAGCAGAGGTT CACCTGCCGGAGCTGAAGACGAGGGATGGTGTCTCCATCCCCATGGAAGACATCGGGACG TCTCAGGTGTGGAACATGCGGTACCGGTTTTGGCCCAACAACAAAAGCAGGATGTATCTT CTCGAAAACACAGGTGATTTTGTTCGTTCAAACGAGCTGCAGGAGGGTGATTTCATTGTG ATCTACTCCGATATCAAGTCAGGCAAATATCTGATACGTGGTGTGAAGGTGAGGCGCGCG GCGCAGGAGCAAGGCAACTCGTCGGGGGCGGTAGGTAAGCATAAGCATGGCTCGCCGGAG AAACCCGGCGTCTCGTCCAATACAAAGGCCGCCGGCGCCGAGGACGGCACCGGCGGCGAT GACAGTGCCGAAGCCGCAGCGGCGGCGGCGGCAGGCAAGGCTGACGGCGGCGGCTGCAAG GGCAAGTCCCCGCACGGCGTGCGGCGTTCTCGCCAGGAGGCCGCCGCCGCCGCCTCCATG AGCCAGATGGCGGTTAGCATCTGAAGAAACAGATGACAGCAGCAGCAGCAAGCTTCAGTC CATTTGAAGGTTAATTATTAGCTAGCTAGCTCCGTATTATAACCGATGGTAAAACCTCCT AAAAAAATTAATTAAGTTGTGCATGTGAATCGTAGCGCTAGCTAGGGATGATATTTGATC AGTAACCCGTAGTCCCCGTACCAGTGACGCTTAAGTACGCATGGTTTGGTTGTTCATCGT TGAACCCCTGTAGTGTGTCGTCGTCCTGTACATGCATCGAATTATGGAATTAATTAATTA CCTTAATCGTCGTGTCC