Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0908800-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:39577048:39580184:1 gene:Os01g0908800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0908800-01)
Sequence	ATGGCCGCCTCCCGCCGCCTCGCGCGAAAGCTCCCGTCTCTCATCTCCAAGCACCAGCGC CTCATCTCGCCGGAGATCGATGTCGAGCAAGCCGCCGAGAGCCCCGCGTCGTCGTCGTCC ATCCCGCTCGACCCCTCCCTGCCCATTCTCCCGCTCGCCGTCTCCCACCTCTCGCCGCCG AGCCCTCTCCCGGCGCTCCCCTCGGTGCACGCGTCCACCCCGGCCGCGCTCCTCCGCATC CTCCGCCGCGCGCGGCACCACCCGCGCCTGGCGGCGCTCGACCTCCACCTCCTCCTCGCG GCCGCGTCCGACTCCCCGGCCTTCCGCCCCGACCACCGCCTCACGTCACTGCTCGCCTCC CGCCTCGCGGAATCCCGCCGCCTCCCCTCGCTCCGCCGCCTCCTCGAGCTCGTCCTCTTC CGCCCCTGCCCCTGCACCGACGACTCCATCTTCGCCTGCCCCGAGCTCCTCCCCACATTC CGCAAGGCCATCCTCGCCTTCGCCGCCTCCGGCGACATCCCCGCCGCGTCTGACGCCCTC GCGTCCCTCCGCCGCGCCGCTGATTCACCTCTCCCCGCCGAATTCTACAACATCATCCTC CACGCACTCGCCCGCCTCCGCCGCCACGAAGACACCGTCCGCTTCTACGGCGAGATGACC TCCACCCACCGCGTCCATCCGGATGTCTACACCTTCAACATTCTCATCAACAGCTCCTGC CGCGCTGAAGGCGTTGATGCTGCGATGCGCTGGTTTCAGGAGATGCGACGTTGGAGCTGT TCACCGACTGGTGTGAGTTTCAATACTCTGATGCGTGGGTTCTTCAGAGAAGGAAGGTGC AAGGAGGGCATTAAGGTTGCACGCGAGATGCTTCAGCTTGGATTTGGGCTATCGGTTGCA TCCATGGAGATCATGATCAATGGGTTGTGCCGTGGTGGGGAGCCTCTGAAGGCGGCCGAG GTTTTCATCGAGTTTTTGGTCGATGGAGTGGTGCCGGAAGGGTTTGATTGCTTGGATCTG GTTGAGTCTCTGTGCCGTGTTCGGAATGTGGAGAAAGCAGTGGAAGTGGTGGAGTTGATA CTGGAAAGGAATTGGGTATCCTGCTTGGGTGTCCCTGCTGGTGTAACGGTTTTGGAGTGC CTGATGAAGGAGGGGAAGCTGGACAAAGCATGCCAGATGATGGGGAGGATGGTTGCTGCG GAGATAGTTCCGGATACCATTTCTTGTAACTATATTTTTGAGGCGCTCTGTGAAGCTGGG AGGACAGTGGACGCAAACAGGCTGAGGCTGCAGGCTAAAGAGAAAGGTTTTCAGGCTGAT GGCTTTACATACAGCATCATTGTGCAGGGCTTTGGGAGGCAGGGAATAAGGAAAGAGGGG GAGGCTGTATTGGATGAAATGCTGGATGCAGGATATGTACCAAACATTGCGACTTACAAT AGGCTGCTTGATGGCTTACACATGGGGAGATCTATGCAATTACAACAAAAATGTTCAAGG CATAGGAATGCAGCAAACTGA

Peptide Sequence

PEP ID	Os01t0908800-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:39577048:39580184:1 gene:Os01g0908800 transcript:Os01t0908800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0908800-01)
Sequence	MAASRRLARKLPSLISKHQRLISPEIDVEQAAESPASSSSIPLDPSLPILPLAVSHLSPP SPLPALPSVHASTPAALLRILRRARHHPRLAALDLHLLLAAASDSPAFRPDHRLTSLLAS RLAESRRLPSLRRLLELVLFRPCPCTDDSIFACPELLPTFRKAILAFAASGDIPAASDAL ASLRRAADSPLPAEFYNIILHALARLRRHEDTVRFYGEMTSTHRVHPDVYTFNILINSSC RAEGVDAAMRWFQEMRRWSCSPTGVSFNTLMRGFFREGRCKEGIKVAREMLQLGFGLSVA SMEIMINGLCRGGEPLKAAEVFIEFLVDGVVPEGFDCLDLVESLCRVRNVEKAVEVVELI LERNWVSCLGVPAGVTVLECLMKEGKLDKACQMMGRMVAAEIVPDTISCNYIFEALCEAG RTVDANRLRLQAKEKGFQADGFTYSIIVQGFGRQGIRKEGEAVLDEMLDAGYVPNIATYN RLLDGLHMGRSMQLQQKCSRHRNAAN

Transcript Sequence

Transcript ID	Os01t0908800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:39577048:39580184:1 gene:Os01g0908800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0908800-01)
Sequence	TTCCACAGTAAAAAGCCTTGTGCTCTTTTCCACTTCGTCTTCCTCCTGCGAACAGTCCAA CCCCTCCGCCTCCGCCTCTGCAGTCCGCCGCCGGCGGCCGGCGGATGGCCGCCTCCCGCC GCCTCGCGCGAAAGCTCCCGTCTCTCATCTCCAAGCACCAGCGCCTCATCTCGCCGGAGA TCGATGTCGAGCAAGCCGCCGAGAGCCCCGCGTCGTCGTCGTCCATCCCGCTCGACCCCT CCCTGCCCATTCTCCCGCTCGCCGTCTCCCACCTCTCGCCGCCGAGCCCTCTCCCGGCGC TCCCCTCGGTGCACGCGTCCACCCCGGCCGCGCTCCTCCGCATCCTCCGCCGCGCGCGGC ACCACCCGCGCCTGGCGGCGCTCGACCTCCACCTCCTCCTCGCGGCCGCGTCCGACTCCC CGGCCTTCCGCCCCGACCACCGCCTCACGTCACTGCTCGCCTCCCGCCTCGCGGAATCCC GCCGCCTCCCCTCGCTCCGCCGCCTCCTCGAGCTCGTCCTCTTCCGCCCCTGCCCCTGCA CCGACGACTCCATCTTCGCCTGCCCCGAGCTCCTCCCCACATTCCGCAAGGCCATCCTCG CCTTCGCCGCCTCCGGCGACATCCCCGCCGCGTCTGACGCCCTCGCGTCCCTCCGCCGCG CCGCTGATTCACCTCTCCCCGCCGAATTCTACAACATCATCCTCCACGCACTCGCCCGCC TCCGCCGCCACGAAGACACCGTCCGCTTCTACGGCGAGATGACCTCCACCCACCGCGTCC ATCCGGATGTCTACACCTTCAACATTCTCATCAACAGCTCCTGCCGCGCTGAAGGCGTTG ATGCTGCGATGCGCTGGTTTCAGGAGATGCGACGTTGGAGCTGTTCACCGACTGGTGTGA GTTTCAATACTCTGATGCGTGGGTTCTTCAGAGAAGGAAGGTGCAAGGAGGGCATTAAGG TTGCACGCGAGATGCTTCAGCTTGGATTTGGGCTATCGGTTGCATCCATGGAGATCATGA TCAATGGGTTGTGCCGTGGTGGGGAGCCTCTGAAGGCGGCCGAGGTTTTCATCGAGTTTT TGGTCGATGGAGTGGTGCCGGAAGGGTTTGATTGCTTGGATCTGGTTGAGTCTCTGTGCC GTGTTCGGAATGTGGAGAAAGCAGTGGAAGTGGTGGAGTTGATACTGGAAAGGAATTGGG TATCCTGCTTGGGTGTCCCTGCTGGTGTAACGGTTTTGGAGTGCCTGATGAAGGAGGGGA AGCTGGACAAAGCATGCCAGATGATGGGGAGGATGGTTGCTGCGGAGATAGTTCCGGATA CCATTTCTTGTAACTATATTTTTGAGGCGCTCTGTGAAGCTGGGAGGACAGTGGACGCAA ACAGGCTGAGGCTGCAGGCTAAAGAGAAAGGTTTTCAGGCTGATGGCTTTACATACAGCA TCATTGTGCAGGGCTTTGGGAGGCAGGGAATAAGGAAAGAGGGGGAGGCTGTATTGGATG AAATGCTGGATGCAGGATATGTACCAAACATTGCGACTTACAATAGGCTGCTTGATGGCT TACACATGGGGAGATCTATGCAATTACAACAAAAATGTTCAAGGCATAGGAATGCAGCAA ACTGAAAGAATATCATAGAGATGAAGAAGCTAGCTTGGATTTCAGAGAGATGCTAGATGA TACCTTCTCAATTGCTCTGATACAGGCTCTTTCATGTGTGATGTTAATCATATCTGGCTA TCGGCAAACAAATTGAGTATTTTTATCTATCTTCATGCACATTTTATGTTTATTCTGTTA ATCACTTTGCTTAGATTCCTAGTAAGGCCTTCTATGGAACAAAGGAAAAAAAAGGTTGTC AGGGTTGTTTAATTTATATTATCTTAGGTTGTAATGTTTTATCTGTATACCGTCCAGTGG TCAGTTTTAGGTTTTTACACAGATGCAGCCTAGATAAACCAGAATTTGCTAAAGAAAGTT AAATCTGATTTTTTAATAGTGACGTTGAGCATTGGTTTTGTAATTACTTCATTTACCTCC CGGCGTAATTACTTCATTTACCTGTTTTGAGTACCACTTGGATTTTTTTTCAGGGATCAT AAACCACATTTTTATAGCATTTTTATGCATGTCTCTATCAGTAAATTTGGTATGGATTTG AAATGTATCATCCCCTCAGTTATCTTGGCTCCAAGAACTGAATAGGAATAACTTTGTAGG AACCTTGCCTAAGCAACGAAGGGTCAAATATTTCATGAACTCGTCCTTTTCTTTTCAGGA GCTTGAGATCAGAGATCAATCAGCACCGGTCTGCCACAGCAACCATCCAAGCCTGAGCTG CGCGTGGCCACTGCCAAACGAGTTGCAACTGCACTAGGCCGAGGAGGCTGCCGTTGAGTT GCTGCTCAGGATTTCCAGTAAGATGTTTCCTTGCGAACACGCTGGCGGTGGTGGCAATGT GGATTCAGTCATCAATGATGGGAAATTGGGAACGACATCAGAGGCAACAAGTACTGAACT CTGCAAGAGCCTCAGAATTTTCTGAAGGGAAAGGATGTGAGGATGGTATCTTGTGCCTGT GAATGTGACAAGCAATGAAGCAAATCCCTGGAAGTTTTGACATCGGCTTCACCCAAAAAC CCGTTGTCACATCAGGTACCAAAAAGTTTTGGCAAATATATTACAAGATGATCTTGTCAA TCTTTCATATGTTGGATAGAAATGCTTTAATTTTGGTCGCTTCAGAGATCATGCATCTAC TTGTGACGTTGGCTGGCATGCATGGCTATTTGGTCATATTGGTTATGTGTACTTTCGGTG GTTGAGCATTTCATTCAATTATCATTTTTAGATTATTGTTGTTCTAACATATGCAGAAAT TCTGAAGTAGAGCAAAGTATTCTTGTTTTCATCTATTAGGAGGTATAC