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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0905800-03
CDS Infomation

cds chromosome:IRGSP-1.0:1:39433448:39435652:-1 gene:Os01g0905800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYTOPLAST ALDOLASE 1 description:Aldolase C-1. (Os01t0905800-01);Aldolase C-1. (Os01t0905800-02);Aldolase C-1. (Os01t0905800-03)
Sequence

ATGTCGGCCTACTGCGGCAAGTACAAGGACGAGCTCATCAAGAATGCTGCCTACATTGGC
ACTCCTGGCAAGGGTATCCTTGCTGCAGATGAGTCCACTGGCACCATTGGCAAGCGCTTT
GCCAGCATCAATGTCGAGAACGTTGAGGAGAACCGCCGCTCTCTCCGCGAGCTGCTCTTC
ACCACCCCTGGTGCCCTCCAGCACCTAAGTGGTGTGATCCTCTTCGAGGAGACCCTGTAC
CAGAAGACCAAGGACGGCAAGCCCTTCGTCGATGTCCTCAAGGAGGGTGGTGTCCTCCCT
GGCATCAAGGTTGACAAGGGTACCGTTGAGGTTGCCGGCACCAACAAAGAGACCACCACC
CAGGGCCACGATGATCTTGGCAAGCGTTGCGCCAAGTACTACGAGGCCGGTGCCCGCTTC
GCCAAGTGGCGTGCTGTCCTCAAGATTGGCCCCAACGAGCCATCGCAGCTTTCCATTGAC
CTGAATGCTCAGGGTCTTGCTCGCTATGCCATCATCTGCCAGGAGAACGGGCTGGTGCCG
ATTGTCGAGCCTGAGATCCTTGTCGATGGCTCTCATGACATTGAGCGCTGTGCCTATGTC
ACCGAGAAGGTCCTCGCTGCCTGCTACAAGGCCCTCAACGAACACCATGTCCTCCTGGAG
GGTTCCCTCCTGAAGCCCAACATGGTCACCCCAGGATCTGAATCCAAGAAGGTTTCCCCT
CAGCTCATCGCCGAGTACACCGTCCGCGCCCTCCAGAGGACTGTCCCTGCTGCCGTGCCT
GCCATTGTCTTCCTCTCTGGTGGACAGAGCGAGGAGGAGGCGACCGTGAACCTCAACGCC
ATGAACAAGCTCAGCACCAAGAAGCCGTGGGCTCTGTCCTTCTCCTTCGGCCGTGCTCTC
CAGCAGAGCACGCTCAAGGCCTGGGGCGGCAAGACGGAGAACGTGGTGAAGGCGCAGAAG
GCCTTCATCACCAGGTGCAAGGCCAACTCTGAGGCTACCCTTGGTACATACCAGGGTGAT
GCTGTGCTCGGCGAGGGTGCCTCTGAGAGCCTTCACGTCAAGGACTACAAGTACTGA

Peptide Sequence

PEP ID

Os01t0905800-03
PEP Infomation

pep chromosome:IRGSP-1.0:1:39433448:39435652:-1 gene:Os01g0905800 transcript:Os01t0905800-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYTOPLAST ALDOLASE 1 description:Aldolase C-1. (Os01t0905800-01);Aldolase C-1. (Os01t0905800-02);Aldolase C-1. (Os01t0905800-03)
Sequence

MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF
TTPGALQHLSGVILFEETLYQKTKDGKPFVDVLKEGGVLPGIKVDKGTVEVAGTNKETTT
QGHDDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLARYAIICQENGLVP
IVEPEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESKKVSP
QLIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRAL
QQSTLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLGEGASESLHVKDYKY

Transcript Sequence

Transcript ID

Os01t0905800-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:39433448:39435652:-1 gene:Os01g0905800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYTOPLAST ALDOLASE 1 description:Aldolase C-1. (Os01t0905800-01);Aldolase C-1. (Os01t0905800-02);Aldolase C-1. (Os01t0905800-03)
Sequence

ACAGTCGCCTCCTCCCCTGCCAAACCAGTCTCCCCCAAATCTCCTTTGCGTCCTCTCGAT
TCCTCAGCGACCATGTCGGCCTACTGCGGCAAGTACAAGGACGAGCTCATCAAGAATGCT
GCCTACATTGGCACTCCTGGCAAGGGTATCCTTGCTGCAGATGAGTCCACTGGCACCATT
GGCAAGCGCTTTGCCAGCATCAATGTCGAGAACGTTGAGGAGAACCGCCGCTCTCTCCGC
GAGCTGCTCTTCACCACCCCTGGTGCCCTCCAGCACCTAAGTGGTGTGATCCTCTTCGAG
GAGACCCTGTACCAGAAGACCAAGGACGGCAAGCCCTTCGTCGATGTCCTCAAGGAGGGT
GGTGTCCTCCCTGGCATCAAGGTTGACAAGGGTACCGTTGAGGTTGCCGGCACCAACAAA
GAGACCACCACCCAGGGCCACGATGATCTTGGCAAGCGTTGCGCCAAGTACTACGAGGCC
GGTGCCCGCTTCGCCAAGTGGCGTGCTGTCCTCAAGATTGGCCCCAACGAGCCATCGCAG
CTTTCCATTGACCTGAATGCTCAGGGTCTTGCTCGCTATGCCATCATCTGCCAGGAGAAC
GGGCTGGTGCCGATTGTCGAGCCTGAGATCCTTGTCGATGGCTCTCATGACATTGAGCGC
TGTGCCTATGTCACCGAGAAGGTCCTCGCTGCCTGCTACAAGGCCCTCAACGAACACCAT
GTCCTCCTGGAGGGTTCCCTCCTGAAGCCCAACATGGTCACCCCAGGATCTGAATCCAAG
AAGGTTTCCCCTCAGCTCATCGCCGAGTACACCGTCCGCGCCCTCCAGAGGACTGTCCCT
GCTGCCGTGCCTGCCATTGTCTTCCTCTCTGGTGGACAGAGCGAGGAGGAGGCGACCGTG
AACCTCAACGCCATGAACAAGCTCAGCACCAAGAAGCCGTGGGCTCTGTCCTTCTCCTTC
GGCCGTGCTCTCCAGCAGAGCACGCTCAAGGCCTGGGGCGGCAAGACGGAGAACGTGGTG
AAGGCGCAGAAGGCCTTCATCACCAGGTGCAAGGCCAACTCTGAGGCTACCCTTGGTACA
TACCAGGGTGATGCTGTGCTCGGCGAGGGTGCCTCTGAGAGCCTTCACGTCAAGGACTAC
AAGTACTGATCTGCTTCTGGTGGTGGCTGAAGATCCGATTGGACATCCTCCGTATGCATA
TTTAGGGTTCTGAGTGTGGTTTGGCTATCAAGCGTCCAATCTTACGGGTATCAAAAACTT
TTGTCGCAATAATCTGAACCTGTGCTTTTTAATAATTAATACCTGTCATCGGTAGTAGTT
TTTTGGTATTCCTGTAATCAAATGCTGCGTATGGTAAATTGGAGCAGCGGCTTTAATTCC
ATGCTATCTTTTTATTGTT