Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0905700-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:39429069:39432424:1 gene:Os01g0905700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0905700-01)
Sequence

ATGTTTCATGGTGGCAGGCCTTTGTCCCTCAGGGGCTCTCTCAAGGCGCTTGAAGCTGAT
ATCCACCATGCCAACACCCTGGCGCATGCTATACACAGGGCCTATGGGGGTGCCTGTGTG
CAGATGAGGCTGTCTTACAGCTCCATGGCTCCAATCATCCTTAACCTCATCCAGTGGATG
GATTGCAGCTGCTCCCTTTCATATACCCTCCCTAGTTACCTAGGTCTCCTTGAGGTTCTT
GTGTACAAGGTATATGTTGATGAGGATGCCTCTATATCCACCAACATTGAAAGGAGAGCA
AGCCTCAAGGAATTCTATGCTGTAATATATCCATTCTTGCAACAACTCGAGGGGAATTTG
ATGGAGAAAGACTGCAACGAGAAAGGATGGTGCAAGGAGGCGGCCTCCGGTGGCGGCGGC
CGGAAGCTTTACGCCGACGATAAGGACGACGAGAGGGAAGATGAGTGCGGCATTTGCTTG
GAGACTTGCACCAAGATGGTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTAT
CGAGACTGGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGAGCCTGAAGAGAGTC
CGATCAAGGGACCTCTGGGTGCTCACCGGAGACGACGACGTGATCGACACCGTGACGCTG
GAGAAGGAGAATGTGAGGCACTTCCACAGCTTCATCGACAGCCTGCCCCTCATAGTCCCT
GACAACCTCTTGCTGGTGTACTACGACTACCTAGTCTGA

Peptide Sequence

PEP ID

Os01t0905700-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:39429069:39432424:1 gene:Os01g0905700 transcript:Os01t0905700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0905700-01)
Sequence

MFHGGRPLSLRGSLKALEADIHHANTLAHAIHRAYGGACVQMRLSYSSMAPIILNLIQWM
DCSCSLSYTLPSYLGLLEVLVYKVYVDEDASISTNIERRASLKEFYAVIYPFLQQLEGNL
MEKDCNEKGWCKEAASGGGGRKLYADDKDDEREDECGICLETCTKMVLPNCNHAMCINCY
RDWYTRSQSCPFCRGSLKRVRSRDLWVLTGDDDVIDTVTLEKENVRHFHSFIDSLPLIVP
DNLLLVYYDYLV

Transcript Sequence

Transcript ID

Os01t0905700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:39429069:39432424:1 gene:Os01g0905700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0905700-01)
Sequence

AAAAGCTCCCTTCCCAGTTTCCCCCAAAGCTCCTTTCCCAGAGACCCCAAACCAAAGCAG
CTTGCTTGCTTGCTTGATTGTTTGTTGCTTCTTGAGCCCCTCTCCTCCTTGCCCAAGTCT
GTGTTTTTGTGGCAGACTTCAGCATAAGGGTGAAGCAAAGCATAGGGTCTGGTTTTGGGT
TCTTGACAGAAGTCATGTTTCATGGTGGCAGGCCTTTGTCCCTCAGGGGCTCTCTCAAGG
CGCTTGAAGCTGATATCCACCATGCCAACACCCTGGCGCATGCTATACACAGGGCCTATG
GGGGTGCCTGTGTGCAGATGAGGCTGTCTTACAGCTCCATGGCTCCAATCATCCTTAACC
TCATCCAGTGGATGGATTGCAGCTGCTCCCTTTCATATACCCTCCCTAGTTACCTAGGTC
TCCTTGAGGTTCTTGTGTACAAGGTATATGTTGATGAGGATGCCTCTATATCCACCAACA
TTGAAAGGAGAGCAAGCCTCAAGGAATTCTATGCTGTAATATATCCATTCTTGCAACAAC
TCGAGGGGAATTTGATGGAGAAAGACTGCAACGAGAAAGGATGGTGCAAGGAGGCGGCCT
CCGGTGGCGGCGGCCGGAAGCTTTACGCCGACGATAAGGACGACGAGAGGGAAGATGAGT
GCGGCATTTGCTTGGAGACTTGCACCAAGATGGTCCTTCCAAATTGCAACCATGCCATGT
GCATCAACTGTTATCGAGACTGGTACACAAGATCTCAGTCATGCCCGTTCTGCCGCGGGA
GCCTGAAGAGAGTCCGATCAAGGGACCTCTGGGTGCTCACCGGAGACGACGACGTGATCG
ACACCGTGACGCTGGAGAAGGAGAATGTGAGGCACTTCCACAGCTTCATCGACAGCCTGC
CCCTCATAGTCCCTGACAACCTCTTGCTGGTGTACTACGACTACCTAGTCTGACGAAGCT
CAGCTCTCCTCTTCTGAAAGATATTGAGATTCAGAGTTCAGTACGTGTTCCGGGCAGCCG
ACCATCCTCTGCAGATTGAGTCTGGCTAGCGAAATGCCATGCCGTCAATGGCGAAGACGA
CGACACCATTGCTCCTTATTAGGGCTGGGCTCTGCGTAATCGCATTGTTTGTTGTAATAA
GTGTATATACAGAATTAAAAAGAGATATTGGGGAAGATGGTTTTCTCATGTTTAACTACT
TGTTTGGCACTTCTGCTCTGGCAAATTGCCAAATGATTCAGAAAAGGGACAGGTGCTGGG
TGTTTATTGACCTGCACCAACTGTCGATTTATTTGC