Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0904400-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:39365920:39374228:-1 gene:Os01g0904400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:structural maintenance of chromosomes protein 2 description:Similar to Chromosome assembly protein homolog. (Os01t0904400-01)
Sequence	ATGCACATCAAGGAGATATGCCTGGAGGGGTTCAAGTCGTACGCCGGGCGGACGGTGGTG TCGGGGTTCGACCCGCTGTTCAACGCCATCACCGGGCTCAACGGCTCCGGCAAGTCCAAC ATCCTCGACTCCATCTGCTTCGTGCTCGGCATCACCGACCTCCGCCAGGTGCGCGCCGCC TCGCTCCAGGAGCTCGTCTACAAGCAGGGCCAGGCCGGCGTCACCAAGGCCACCGTCTCC ATCGTCTTCGACAACTCCGACCGCTCCCGCTCGCCGCTCGGCTATGAGGATTCACCCGAG ATTACCGTCACGCGCCAGATTGTAGTTGGTGGGCGAAACAAGTATCTTATCAATGGCCAT CTTGCACAACCTTCCCGAGTGCAGACTCTTTTCCATTCTGTGCAGCTAAATGTGAACAAT CCCCATTTTCTAATTATGCAAGGACGCATAACAAAAGTGCTGAACATGAAGCCTCCAGAA ATTCTCTCCATGTTGGAAGAGGCAGCAGGTACAAGGATGTATGAAATGAAGAAGGAAGCT GCTCTGAAAACACTCGAGAAGAAGCAGAATAAAGTGGATGAGATTAATAAACTCCTTGAT GAAGAAATCCTTCCTGCATTAGAGAAGCTTAGGAAAGAGCGGTGTCAGTACATGAAATGG GCCAATGGCAATGCTGACTTAGATCGGCTCAAAAGATTCTGCATCGCTTATGAGTTTGTT CAAGCTGAGCGAGTGAGAGATGGTGCACTCAATGATGTCAAACAAATCAGGGCAAAGATT GTTGAGCTGGATGAAAGCACAGAGAAGCTAAAATCAGAGATACAGGAAATGGATAAGAAC ATATCTAACTTGGCTGCTGAAAAAGAAGCTAAACTAGGTGGTGAGATGAAAACTTTGTCA GAGAAAGTGGATAAGCTCTCACATGCACTTATCAAGGAAACTTCTGTGATGAATAATCAA GAGGAAACAATAAAGTCAGAGGAAAAGGGTGCTGAAAAGATTCTCAAGAACATTGAAGAC ATCAAAAGATCTATAATTGAGCGGGACACAGCTGTAAAAAATGCAGAGGATGGTGCAGCT GACATGAAAAAGAGAGCAGATGATCTGACAAAAGAGTTGGACGAGAGTGAGAAAGAATAC CAGGGTGTACTAGCAGGAAAAAGCAATGCAAATGAAAAGAAATGCCTAGAAGATCAACTA AGAGATGCAAAAGCTGCTGTCGGAGAGGCAGAATCTGGACTAAAGCAGCTGACGACAAAA ATAAGCCATTCTGAGAAGGAGCTAAAAGATAAGAAAGCCCAGTTGGTATCTAAGCGTGAT GAAGCTACTGCGGCTGAGAATGAGCTGAAAGCTAGGGAAAAGGACTTGGAAACTGTCAAG GCATCCATGCAATCTGTAAATTATGAAGAAGGACAGATGGAAGCTTTGCAAAAGGATCGA TCTATTGAGTTAGACGCCGTCCAGAAACTGAAGGACAAAATTCGTGCTCTCTCTGGTGAA CTAGCAAATGTTCACTTCAATTATCGAGACCCTGTTAAGAATTTTGACAGATCAAAAGTG AAAGGAGTAGTTGCACGGCTTATCAAAATAAAGGATAGCTCAACTGCAACAGCGCTGGAG GTTGCTGCTGGTGGAAGGCTATACAATGTGGTTGTTGATACTGAAACCACTGGAAAGCAA CTCCTACAAAATGGAGATCTCAAAAGAAGGGTAACCATCATACCATTGAATAAGATCCAG ACAGGTACCATACCTGAGAGAGTTCGGCAGGCAGCTCGTAGACTGGTTGGAGCTGAAAAT GTAACATTGGCTCTAGAACTGGTTGGCTATGTTGAAGAAGTAAAGAATGCTATGACTTAT GTCTTTGGTTCAACATTTGTGTGTCGAAATATGGAATCCGCGAAAGAGGTTGCATTTAAC AGAGAAGTTGGCAGTACAAGTGTGACCCTTGAAGGTGACATTTTTCAGCCCAGTGGCCTT TTGACTGGAGGTAGTCGCAGAGGTGGTGGGGACTTGCTAAGGCAACTACATGAATTAGCT AAAGCTGAGGCTGATCTTGCCAATCATGAGAAAAGACTTTCTGTTATTGAACAAAAGATT GTGGTGCTTTTGCCTCTGCAGAAGAAGTTCACAGAGTTGAAATCACAGTTTGAACTCAAA TCATATGACCTGTCATTATTTCAGAACCGTGTTGAGCAAAATGAACATCACAAGCTAGGT GAACTTGTAAAGAAACTTGAACAAGAGCTTCAGGAATCAAAGCAAGAGCTAAAAGCAAAG CAAGCGCAGTACGAAAAATCTGTCTCTACTGTTTCTGAGCTAGAAAAGACCATCAAGACT TATGGCAGTGAGCGTGAAGGTAGACTCAAAGCTCTGGAAAGAAAAATCAAATCATTAAAA TCGGAGTTGCAGTCCATGTCGAAGCAACTAAAGGCCCATGAAAGTGAGAGGGAGAGGCTT ATTATGGAGAAAGATGCTGTTGCCAATGAGCTTGCCATGCTTGAAGAGCAACTGACAACT TCAAAAGCTCAAATTGCCGCTATGACTGAAACTTTGAATAGGCATCAGACCAAGGTTGCT TCCATAAAGCAAGACTATGATCAAGCTGAATCTGAGCTCAACATTGGGCGTTCTAAACTG AAGGAATGTGACTCACAGATAAATAGCATGGCCAAGGAGCAGCAAAAACTGCAGCAGCAA CTAAGTGATTCAAATGTTGAAAGGAAGAAAATGGAAAACGAGGTTAAGAGGATGGAGATT GAGCAGAAGGATTGCTCTTCAAAGGTTGATAAGTTAGTAGAGAAGTACAGTTGGATTGCA ACTGAAAAACAGTTGTTTGGAAAAAGTGGCACTGATTATGACTTTGTATCATGTGAACCT CATAAAGCACGAGAAGAACTTGAAAATCTCCAAGCTCAACAATCCAGTCTTGAGAAGAGG GTCAATAAGAAAGTTATGGCAATGTTTGAGAAGGCAGAGGATGAGTATAATGATTTGATG TCAAAGAAAAACATCATTGAGAATGACAAGTCAAAAATCAAGACAGTGATAGAAGAGTTG GATGAGAAGAAGAAAGAGACCTTGAAAGTCACATGGCTTAAAGTAAACAAGGATTTTGGA TCTATATTCAGTACACTTTTACCTGGCACAATGGCCAAACTTGATCCTCCTGAAGGTGGT ACTTTTTTGGATGGTCTTGAAGTTCGGGTGGCATTTGGAACAGTTTGGAAACAATCTTTA TCTGAACTTAGTGGAGGGCAACGGTCCCTCCTCGCTCTTAGTCTTATCCTGGCGCTACTT CTTTTCAAACCTGCACCACTTTATATATTAGATGAGGTTGATGCTGCCCTAGATCTGAGC CATACACAAAACATTGGTAGAATGATCAAGGCGCATTTTCCGCACTCCCAGTTCATAGTT GTCTCACTAAAAGAGGGCATGTTCAACAACGCAAATGTGATATTCCGAACGAAATTTGTT GATGGGGTGTCCACTGTGACACGAACGGTCCCTTCAAAGCAAAGATGA

Peptide Sequence

PEP ID	Os01t0904400-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:39365920:39374228:-1 gene:Os01g0904400 transcript:Os01t0904400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:structural maintenance of chromosomes protein 2 description:Similar to Chromosome assembly protein homolog. (Os01t0904400-01)
Sequence	MHIKEICLEGFKSYAGRTVVSGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA SLQELVYKQGQAGVTKATVSIVFDNSDRSRSPLGYEDSPEITVTRQIVVGGRNKYLINGH LAQPSRVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYEMKKEA ALKTLEKKQNKVDEINKLLDEEILPALEKLRKERCQYMKWANGNADLDRLKRFCIAYEFV QAERVRDGALNDVKQIRAKIVELDESTEKLKSEIQEMDKNISNLAAEKEAKLGGEMKTLS EKVDKLSHALIKETSVMNNQEETIKSEEKGAEKILKNIEDIKRSIIERDTAVKNAEDGAA DMKKRADDLTKELDESEKEYQGVLAGKSNANEKKCLEDQLRDAKAAVGEAESGLKQLTTK ISHSEKELKDKKAQLVSKRDEATAAENELKAREKDLETVKASMQSVNYEEGQMEALQKDR SIELDAVQKLKDKIRALSGELANVHFNYRDPVKNFDRSKVKGVVARLIKIKDSSTATALE VAAGGRLYNVVVDTETTGKQLLQNGDLKRRVTIIPLNKIQTGTIPERVRQAARRLVGAEN VTLALELVGYVEEVKNAMTYVFGSTFVCRNMESAKEVAFNREVGSTSVTLEGDIFQPSGL LTGGSRRGGGDLLRQLHELAKAEADLANHEKRLSVIEQKIVVLLPLQKKFTELKSQFELK SYDLSLFQNRVEQNEHHKLGELVKKLEQELQESKQELKAKQAQYEKSVSTVSELEKTIKT YGSEREGRLKALERKIKSLKSELQSMSKQLKAHESERERLIMEKDAVANELAMLEEQLTT SKAQIAAMTETLNRHQTKVASIKQDYDQAESELNIGRSKLKECDSQINSMAKEQQKLQQQ LSDSNVERKKMENEVKRMEIEQKDCSSKVDKLVEKYSWIATEKQLFGKSGTDYDFVSCEP HKAREELENLQAQQSSLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKTVIEEL DEKKKETLKVTWLKVNKDFGSIFSTLLPGTMAKLDPPEGGTFLDGLEVRVAFGTVWKQSL SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIV VSLKEGMFNNANVIFRTKFVDGVSTVTRTVPSKQR

Transcript Sequence

Transcript ID	Os01t0904400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:39365920:39374228:-1 gene:Os01g0904400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:structural maintenance of chromosomes protein 2 description:Similar to Chromosome assembly protein homolog. (Os01t0904400-01)
Sequence	GCGGCCGCGGCATTTCGAATTCCCAACCCCGAAAATCCCCACGCCCCGAAAATTTTTCGC GCCCAAACCCACCAAACCCTAGACCCACCTCCGGCCGGCGACGCCGCCGCCGGCGGCCGG CGAGGATGCACATCAAGGAGATATGCCTGGAGGGGTTCAAGTCGTACGCCGGGCGGACGG TGGTGTCGGGGTTCGACCCGCTGTTCAACGCCATCACCGGGCTCAACGGCTCCGGCAAGT CCAACATCCTCGACTCCATCTGCTTCGTGCTCGGCATCACCGACCTCCGCCAGGTGCGCG CCGCCTCGCTCCAGGAGCTCGTCTACAAGCAGGGCCAGGCCGGCGTCACCAAGGCCACCG TCTCCATCGTCTTCGACAACTCCGACCGCTCCCGCTCGCCGCTCGGCTATGAGGATTCAC CCGAGATTACCGTCACGCGCCAGATTGTAGTTGGTGGGCGAAACAAGTATCTTATCAATG GCCATCTTGCACAACCTTCCCGAGTGCAGACTCTTTTCCATTCTGTGCAGCTAAATGTGA ACAATCCCCATTTTCTAATTATGCAAGGACGCATAACAAAAGTGCTGAACATGAAGCCTC CAGAAATTCTCTCCATGTTGGAAGAGGCAGCAGGTACAAGGATGTATGAAATGAAGAAGG AAGCTGCTCTGAAAACACTCGAGAAGAAGCAGAATAAAGTGGATGAGATTAATAAACTCC TTGATGAAGAAATCCTTCCTGCATTAGAGAAGCTTAGGAAAGAGCGGTGTCAGTACATGA AATGGGCCAATGGCAATGCTGACTTAGATCGGCTCAAAAGATTCTGCATCGCTTATGAGT TTGTTCAAGCTGAGCGAGTGAGAGATGGTGCACTCAATGATGTCAAACAAATCAGGGCAA AGATTGTTGAGCTGGATGAAAGCACAGAGAAGCTAAAATCAGAGATACAGGAAATGGATA AGAACATATCTAACTTGGCTGCTGAAAAAGAAGCTAAACTAGGTGGTGAGATGAAAACTT TGTCAGAGAAAGTGGATAAGCTCTCACATGCACTTATCAAGGAAACTTCTGTGATGAATA ATCAAGAGGAAACAATAAAGTCAGAGGAAAAGGGTGCTGAAAAGATTCTCAAGAACATTG AAGACATCAAAAGATCTATAATTGAGCGGGACACAGCTGTAAAAAATGCAGAGGATGGTG CAGCTGACATGAAAAAGAGAGCAGATGATCTGACAAAAGAGTTGGACGAGAGTGAGAAAG AATACCAGGGTGTACTAGCAGGAAAAAGCAATGCAAATGAAAAGAAATGCCTAGAAGATC AACTAAGAGATGCAAAAGCTGCTGTCGGAGAGGCAGAATCTGGACTAAAGCAGCTGACGA CAAAAATAAGCCATTCTGAGAAGGAGCTAAAAGATAAGAAAGCCCAGTTGGTATCTAAGC GTGATGAAGCTACTGCGGCTGAGAATGAGCTGAAAGCTAGGGAAAAGGACTTGGAAACTG TCAAGGCATCCATGCAATCTGTAAATTATGAAGAAGGACAGATGGAAGCTTTGCAAAAGG ATCGATCTATTGAGTTAGACGCCGTCCAGAAACTGAAGGACAAAATTCGTGCTCTCTCTG GTGAACTAGCAAATGTTCACTTCAATTATCGAGACCCTGTTAAGAATTTTGACAGATCAA AAGTGAAAGGAGTAGTTGCACGGCTTATCAAAATAAAGGATAGCTCAACTGCAACAGCGC TGGAGGTTGCTGCTGGTGGAAGGCTATACAATGTGGTTGTTGATACTGAAACCACTGGAA AGCAACTCCTACAAAATGGAGATCTCAAAAGAAGGGTAACCATCATACCATTGAATAAGA TCCAGACAGGTACCATACCTGAGAGAGTTCGGCAGGCAGCTCGTAGACTGGTTGGAGCTG AAAATGTAACATTGGCTCTAGAACTGGTTGGCTATGTTGAAGAAGTAAAGAATGCTATGA CTTATGTCTTTGGTTCAACATTTGTGTGTCGAAATATGGAATCCGCGAAAGAGGTTGCAT TTAACAGAGAAGTTGGCAGTACAAGTGTGACCCTTGAAGGTGACATTTTTCAGCCCAGTG GCCTTTTGACTGGAGGTAGTCGCAGAGGTGGTGGGGACTTGCTAAGGCAACTACATGAAT TAGCTAAAGCTGAGGCTGATCTTGCCAATCATGAGAAAAGACTTTCTGTTATTGAACAAA AGATTGTGGTGCTTTTGCCTCTGCAGAAGAAGTTCACAGAGTTGAAATCACAGTTTGAAC TCAAATCATATGACCTGTCATTATTTCAGAACCGTGTTGAGCAAAATGAACATCACAAGC TAGGTGAACTTGTAAAGAAACTTGAACAAGAGCTTCAGGAATCAAAGCAAGAGCTAAAAG CAAAGCAAGCGCAGTACGAAAAATCTGTCTCTACTGTTTCTGAGCTAGAAAAGACCATCA AGACTTATGGCAGTGAGCGTGAAGGTAGACTCAAAGCTCTGGAAAGAAAAATCAAATCAT TAAAATCGGAGTTGCAGTCCATGTCGAAGCAACTAAAGGCCCATGAAAGTGAGAGGGAGA GGCTTATTATGGAGAAAGATGCTGTTGCCAATGAGCTTGCCATGCTTGAAGAGCAACTGA CAACTTCAAAAGCTCAAATTGCCGCTATGACTGAAACTTTGAATAGGCATCAGACCAAGG TTGCTTCCATAAAGCAAGACTATGATCAAGCTGAATCTGAGCTCAACATTGGGCGTTCTA AACTGAAGGAATGTGACTCACAGATAAATAGCATGGCCAAGGAGCAGCAAAAACTGCAGC AGCAACTAAGTGATTCAAATGTTGAAAGGAAGAAAATGGAAAACGAGGTTAAGAGGATGG AGATTGAGCAGAAGGATTGCTCTTCAAAGGTTGATAAGTTAGTAGAGAAGTACAGTTGGA TTGCAACTGAAAAACAGTTGTTTGGAAAAAGTGGCACTGATTATGACTTTGTATCATGTG AACCTCATAAAGCACGAGAAGAACTTGAAAATCTCCAAGCTCAACAATCCAGTCTTGAGA AGAGGGTCAATAAGAAAGTTATGGCAATGTTTGAGAAGGCAGAGGATGAGTATAATGATT TGATGTCAAAGAAAAACATCATTGAGAATGACAAGTCAAAAATCAAGACAGTGATAGAAG AGTTGGATGAGAAGAAGAAAGAGACCTTGAAAGTCACATGGCTTAAAGTAAACAAGGATT TTGGATCTATATTCAGTACACTTTTACCTGGCACAATGGCCAAACTTGATCCTCCTGAAG GTGGTACTTTTTTGGATGGTCTTGAAGTTCGGGTGGCATTTGGAACAGTTTGGAAACAAT CTTTATCTGAACTTAGTGGAGGGCAACGGTCCCTCCTCGCTCTTAGTCTTATCCTGGCGC TACTTCTTTTCAAACCTGCACCACTTTATATATTAGATGAGGTTGATGCTGCCCTAGATC TGAGCCATACACAAAACATTGGTAGAATGATCAAGGCGCATTTTCCGCACTCCCAGTTCA TAGTTGTCTCACTAAAAGAGGGCATGTTCAACAACGCAAATGTGATATTCCGAACGAAAT TTGTTGATGGGGTGTCCACTGTGACACGAACGGTCCCTTCAAAGCAAAGATGATTGGATT CATTCATCACTTCGTCTGAAGGAGGATGAAGTCGTTTGTTATGCTCTTTGCTAACTTTTC TGCTGATGCTACCCCCAAAGGGTGTGTTTGGATAATGGGAAATGAGGGATGGGATTGGGA TTGGGAAATGAATGAAGGGTTAGGATTAAATGGATGAGGGAGAATGAATGGTTAAGATTT AAAGAGGGGTGGGAAATCATTTCCCTTAGACATTTGCCAAACACTGCCAAAATGTTTCAA GCGCCTCGCTTGTCAGGCCCATAACATTAACGTGACTCAGTAAAATGTTCTAGAACACCC TTACGTTGATGCATCTATCTAGTTCCCTGTATGTATTTGATCTGACAGAATGTAAGATTA ACTATTACATTTGTAGTAAATAAGTGTAGCCTTTTATTATTAGAAAATTGGCTTGACTAA CTGGAACGTGTCG