Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0900900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:39216719:39218757:-1 gene:Os01g0900900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ovarian tumour, otubain domain containing protein. (Os01t0900900-01)
Sequence

ATGTCGGATCGGGAGCTCCGCCCGCTGCGATCGATCCGAATTACAGGCGATGGGAGATGC
CTCTTTAGGTCTGTTGCGTACGGTGCCTGCTTAAGGAGAGGAAAGCAGTCGCCAAGCGAT
AGCATCCAGAAGGAGCTTGCCGATGAGCTTCGATCGAAAGTAGCAGATGAGTTTGTCAGG
AGAAGAGGGGACACTGAATGGTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATA
AGAAAGCCTCATGTTTGGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGG
ATGCCTATCACTGTTTACATGTATACCAAGGGCTCTGATAGCCCCAGGATCATCGCCGAA
TACGGTCAGGAGTATGGCAAGGACAATCCAATCTGCGTGCTCTACGATGGTTACGGACAC
TACGATGCGCTGCAGCCATCTCTTGTAAGAACACAATCAAGGCTGAGAGGAATACAGATA
ACCGAAGATTACGCTACCTAA

Peptide Sequence

PEP ID

Os01t0900900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:39216719:39218757:-1 gene:Os01g0900900 transcript:Os01t0900900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ovarian tumour, otubain domain containing protein. (Os01t0900900-01)
Sequence

MSDRELRPLRSIRITGDGRCLFRSVAYGACLRRGKQSPSDSIQKELADELRSKVADEFVR
RRGDTEWFLEGDFESYVRQIRKPHVWGGEPELLMCSHVLRMPITVYMYTKGSDSPRIIAE
YGQEYGKDNPICVLYDGYGHYDALQPSLVRTQSRLRGIQITEDYAT

Transcript Sequence

Transcript ID

Os01t0900900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:39216719:39218757:-1 gene:Os01g0900900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ovarian tumour, otubain domain containing protein. (Os01t0900900-01)
Sequence

GTGCGCCCACGAGCCTGGTCCCCTCTCTGCCTCATTCCAATCCCCCTTCGTCTCCGGCGA
CGACAGGAGGAGGAGGAGGAAAGAGGAGGATCGCGGCGCGGCGGATGTCGGATCGGGAGC
TCCGCCCGCTGCGATCGATCCGAATTACAGGCGATGGGAGATGCCTCTTTAGGTCTGTTG
CGTACGGTGCCTGCTTAAGGAGAGGAAAGCAGTCGCCAAGCGATAGCATCCAGAAGGAGC
TTGCCGATGAGCTTCGATCGAAAGTAGCAGATGAGTTTGTCAGGAGAAGAGGGGACACTG
AATGGTTTCTTGAAGGAGATTTCGAGAGCTATGTGAGACAGATAAGAAAGCCTCATGTTT
GGGGAGGAGAACCTGAACTGCTCATGTGCTCCCATGTTCTTAGGATGCCTATCACTGTTT
ACATGTATACCAAGGGCTCTGATAGCCCCAGGATCATCGCCGAATACGGTCAGGAGTATG
GCAAGGACAATCCAATCTGCGTGCTCTACGATGGTTACGGACACTACGATGCGCTGCAGC
CATCTCTTGTAAGAACACAATCAAGGCTGAGAGGAATACAGATAACCGAAGATTACGCTA
CCTAAGATTGTTCTCAAGGACAGTATCAAGATCCTCTGCTACATGATTTCACAAACTGTA
TAGTGGTATTGTGACACATATGAAATGCTAGCCTGGCTTTACTGTTCCATATTTCATATT
TCAAGGCTGATGATAAATAAACTTCAGATGTGC