Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0900800-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:39211307:39216467:1 gene:Os01g0900800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 109 description:Helix-loop-helix DNA-binding domain containing protein. (Os01t0900800-01);Similar to BHLH transcription factor (Fragment). (Os01t0900800-02)
Sequence	ATGAACAGGATGACGGCGCCGCACGGGGGGATGCCGCCGCCGCCGATGCCGGCGGCGGGG GGGCTGGCGAGGTACGGCTCGGCGCCGGGGTCGCTGCTGGCGTCGATCGCCGACTCGGTG ATCCGGGGCCGCGGGGTTGGGGTTGTCGATCAGCTGCATCATCATCAGCATCAGCATCAG CTTCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGATGGTGGGGAGGTACTTCTCCGCGGAG TCGTCGGGGCTCACCTCCTGCGAGTCCAGCTGCCGGACGACGACGACGACGTCCACAGCG GCGGCGGCCGATGTCGGGCGGCACCCGCTCGAGCGCGCGTACGGCGGCTCCGGCGAGATC CACGTCGACGCCTCCTCCGCCGCCGTCCCGCTCTTCCGCCACAGCAGCTCCCCCGCCGGC CTCCTCTCCCGCCTCATGGCTGACCCGCACGGCAATGGCATGGCCGCGACGAGAGGGATG GGCGGCTACTCCGGCGGCGGCGGCGACGCCGGCGCGATGGCGCACAGGAGGCTGAGCTCG CAGTGGAGCTTCTCGCGGCAGGACCTGCCGCAGATATCGGAGATGGGCGGCCTCATCCCC GACATCGGGGAGAGCATCGTCACCGGCGGCGGCGGCAACAGCTCCAGCGATGGCGCCGGC CACGGCGCGCAGTCCTCCTCCTTCCTCTCCTCCAGGAACTTCTCCATGAGCTCCTGGGAC GACACCAACTCCATCATGTTCTCGCCCCCGAGCAGCAGCAAGAAGGCCCGCGTCGCCGCC GCCGCCGCCGGCGACCACGGCGACGACATGGTCTCCAGCTTCAGCAACATCGACTCCCAG TTTGGCTTGTCGAAGCAGTCGTCGCTGGAGATGGCCGGCATGGATGACTTCTTGCAGCTC CAGCCAGACTCCGTCGCCTGCAGGGCCCGGGCAAAGCGCGGCTGCGCGACGCACCCGCGG AGCATCGCTGAGAGGGAGAGGAGAACGAGGATTAGCAAGAGGCTGAAGAAGCTGCAGGAT CTCGTGCCGAACATGGACAAGCAAACGAATACATCAGACATGTTGGATATTGCTGTAACC TACATCAAGGAGCTTCAGGGCCAAGTTGAGAAGCTAAAACATGACCAAGCAAACTGCACT TGCTCAGGCAAGCACGATTGCTGA

Peptide Sequence

PEP ID	Os01t0900800-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:39211307:39216467:1 gene:Os01g0900800 transcript:Os01t0900800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 109 description:Helix-loop-helix DNA-binding domain containing protein. (Os01t0900800-01);Similar to BHLH transcription factor (Fragment). (Os01t0900800-02)
Sequence	MNRMTAPHGGMPPPPMPAAGGLARYGSAPGSLLASIADSVIRGRGVGVVDQLHHHQHQHQ LPPPPPPQQQQMVGRYFSAESSGLTSCESSCRTTTTTSTAAAADVGRHPLERAYGGSGEI HVDASSAAVPLFRHSSSPAGLLSRLMADPHGNGMAATRGMGGYSGGGGDAGAMAHRRLSS QWSFSRQDLPQISEMGGLIPDIGESIVTGGGGNSSSDGAGHGAQSSSFLSSRNFSMSSWD DTNSIMFSPPSSSKKARVAAAAAGDHGDDMVSSFSNIDSQFGLSKQSSLEMAGMDDFLQL QPDSVACRARAKRGCATHPRSIAERERRTRISKRLKKLQDLVPNMDKQTNTSDMLDIAVT YIKELQGQVEKLKHDQANCTCSGKHDC

Transcript Sequence

Transcript ID	Os01t0900800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:39211307:39216467:1 gene:Os01g0900800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 109 description:Helix-loop-helix DNA-binding domain containing protein. (Os01t0900800-01);Similar to BHLH transcription factor (Fragment). (Os01t0900800-02)
Sequence	GGCAAAGCAGAAGCCGAAGCCGAAGCCGCAACCTGCAAAACCAAGTCCACCTCCGCCTCC GCCTCCGCCTCCGCCTCCACCCACCACCACCACCGCCGCCGCCGCGCCGCCGGAGATGAA CAGGATGACGGCGCCGCACGGGGGGATGCCGCCGCCGCCGATGCCGGCGGCGGGGGGGCT GGCGAGGTACGGCTCGGCGCCGGGGTCGCTGCTGGCGTCGATCGCCGACTCGGTGATCCG GGGCCGCGGGGTTGGGGTTGTCGATCAGCTGCATCATCATCAGCATCAGCATCAGCTTCC GCCGCCGCCGCCGCCGCAGCAGCAGCAGATGGTGGGGAGGTACTTCTCCGCGGAGTCGTC GGGGCTCACCTCCTGCGAGTCCAGCTGCCGGACGACGACGACGACGTCCACAGCGGCGGC GGCCGATGTCGGGCGGCACCCGCTCGAGCGCGCGTACGGCGGCTCCGGCGAGATCCACGT CGACGCCTCCTCCGCCGCCGTCCCGCTCTTCCGCCACAGCAGCTCCCCCGCCGGCCTCCT CTCCCGCCTCATGGCTGACCCGCACGGCAATGGCATGGCCGCGACGAGAGGGATGGGCGG CTACTCCGGCGGCGGCGGCGACGCCGGCGCGATGGCGCACAGGAGGCTGAGCTCGCAGTG GAGCTTCTCGCGGCAGGACCTGCCGCAGATATCGGAGATGGGCGGCCTCATCCCCGACAT CGGGGAGAGCATCGTCACCGGCGGCGGCGGCAACAGCTCCAGCGATGGCGCCGGCCACGG CGCGCAGTCCTCCTCCTTCCTCTCCTCCAGGAACTTCTCCATGAGCTCCTGGGACGACAC CAACTCCATCATGTTCTCGCCCCCGAGCAGCAGCAAGAAGGCCCGCGTCGCCGCCGCCGC CGCCGGCGACCACGGCGACGACATGGTCTCCAGCTTCAGCAACATCGACTCCCAGTTTGG CTTGTCGAAGCAGTCGTCGCTGGAGATGGCCGGCATGGATGACTTCTTGCAGCTCCAGCC AGACTCCGTCGCCTGCAGGGCCCGGGCAAAGCGCGGCTGCGCGACGCACCCGCGGAGCAT CGCTGAGAGGGAGAGGAGAACGAGGATTAGCAAGAGGCTGAAGAAGCTGCAGGATCTCGT GCCGAACATGGACAAGCAAACGAATACATCAGACATGTTGGATATTGCTGTAACCTACAT CAAGGAGCTTCAGGGCCAAGTTGAGAAGCTAAAACATGACCAAGCAAACTGCACTTGCTC AGGCAAGCACGATTGCTGAGGCTGGAGAACCAGATCTCCGAGCTAATGTTGTAATGATGT GATTGGTGAACCCAAAGTTTTGCTTCAGAAGATTAGGGTGTAAAAGCACTTCACATGTCA AGTGGCCTCCATGCCTCGCCCTCCCCTTTATCGGTTGTGTTATGGACAGCGTCAATGACT TGAAGAGTAGGCGGTGACAAAGTAGATTAATTGTTGTATTTTAATTGATGTAAGGCAGTG GCTTGTATGTAAAATCATCCATTTCAACGCCAATGGGATTGCTTCTTATT