Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0899700-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:39136937:39139380:-1 gene:Os01g0899700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pollen Ole e 1 allergen and extensin domain containing protein. (Os01t0899700-01)
Sequence

ATGAAATTTAGCATGAGAGGACAGCCAAAGGGTATCCCATGGCTGGTATTGGCCATGCTG
ATTGCAACTTTCGCAATGCTCACGGAGGGAGCTACCAGCTTGTCGCCACCTTCTCTCTCC
CTAACACCAACGTATGCTCCTGTTATTAAGGTGATAGGGAAGGTGTACTGCTATAGATGC
TTCAATGAGGCACACCCAGAAGAATCCCATGGGAAGGAGCACCTGAAAGGAGCAATGGTC
AAGGTTACTTGTCAGGCTAATGACCAGGCACTGGTGGGTTTCGGCTATACCCAAGACAAT
GGCAAGTACAGCGTGAGCATCACAGGCTTACCACTCAGCAGCACATATGGGGCCGACTCA
TGTAAGGTTGAGCTCCATTCAGCACCAGGAGGATCTGACTGCAACGTGCCAATCGAGCTA
AACTTGTCTGGGCTTAGCGTTTACTCGAAGTCCAATGAGGAAGTGGTGCTCCAAGCCAAC
CAAGTAATGGCATTCGCGTCACAGAAGACATTTGGGTTTTGTTCGAAACCTCACATTCAA
CCACCAATTTTTCCATACAATTCACCACCACCGTCCCCTTACCAGTATCCCTCACCTCCT
TTCAACTACAAGTCCCCGCCGTTGCCAAATCAGTTTTCACCCCCTCCATTCAACAAGTTT
CCACCTCCATCTCACCAGTATCCATCACCTCCGCAGAGTTCCTACCATTCACCACCACCC
TATCAGTATACACCTCCAAACAGCTACCAAGCTCCACCAACATCTTACAATCACCCGCCA
CCCCCATATGGATACAATTCTCCGATCCCACCAACCAACAAGTATTTACCACCCCCATAC
TACTTCAACTCCCCACCGCCACAATACCAGCATTCGCCACCTGCAAACAGCTATGTATCG
CCACCACTAGCTCACCAATATCCCCCACCTCCATACAAGTCACCACCAATACCTCCTTAC
TACTTCAACTCTCCACCAGCAAACCATTATTCACCACCTCCATACAACTTTGGATCTTCT
CCCCCAACCTACCAGTACTCTCCACCATTGCTTCCGAAAACTCCAAAATATTTACCTCCT
AAAGTTCCTCTTGAGATGTCTCCACCGGCACATGCAACATCTCCACAGCCTCTGGTCCAC
TATAGCCCTCCGCCACCACTGCAGCATGCTGGCATATCATCGACAACACCATCTGTGAAC
TCCTATCAATCCCCGCCACCAGTAAATCAGCTGTCATAA

Peptide Sequence

PEP ID

Os01t0899700-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:39136937:39139380:-1 gene:Os01g0899700 transcript:Os01t0899700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pollen Ole e 1 allergen and extensin domain containing protein. (Os01t0899700-01)
Sequence

MKFSMRGQPKGIPWLVLAMLIATFAMLTEGATSLSPPSLSLTPTYAPVIKVIGKVYCYRC
FNEAHPEESHGKEHLKGAMVKVTCQANDQALVGFGYTQDNGKYSVSITGLPLSSTYGADS
CKVELHSAPGGSDCNVPIELNLSGLSVYSKSNEEVVLQANQVMAFASQKTFGFCSKPHIQ
PPIFPYNSPPPSPYQYPSPPFNYKSPPLPNQFSPPPFNKFPPPSHQYPSPPQSSYHSPPP
YQYTPPNSYQAPPTSYNHPPPPYGYNSPIPPTNKYLPPPYYFNSPPPQYQHSPPANSYVS
PPLAHQYPPPPYKSPPIPPYYFNSPPANHYSPPPYNFGSSPPTYQYSPPLLPKTPKYLPP
KVPLEMSPPAHATSPQPLVHYSPPPPLQHAGISSTTPSVNSYQSPPPVNQLS

Transcript Sequence

Transcript ID

Os01t0899700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:39136937:39139380:-1 gene:Os01g0899700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pollen Ole e 1 allergen and extensin domain containing protein. (Os01t0899700-01)
Sequence

ATTCAGTCCTCTTCTCCTGTCCTCACACTTGAGAAACCACTGCCAATTGTCAAACAATGA
AATTTAGCATGAGAGGACAGCCAAAGGGTATCCCATGGCTGGTATTGGCCATGCTGATTG
CAACTTTCGCAATGCTCACGGAGGGAGCTACCAGCTTGTCGCCACCTTCTCTCTCCCTAA
CACCAACGTATGCTCCTGTTATTAAGGTGATAGGGAAGGTGTACTGCTATAGATGCTTCA
ATGAGGCACACCCAGAAGAATCCCATGGGAAGGAGCACCTGAAAGGAGCAATGGTCAAGG
TTACTTGTCAGGCTAATGACCAGGCACTGGTGGGTTTCGGCTATACCCAAGACAATGGCA
AGTACAGCGTGAGCATCACAGGCTTACCACTCAGCAGCACATATGGGGCCGACTCATGTA
AGGTTGAGCTCCATTCAGCACCAGGAGGATCTGACTGCAACGTGCCAATCGAGCTAAACT
TGTCTGGGCTTAGCGTTTACTCGAAGTCCAATGAGGAAGTGGTGCTCCAAGCCAACCAAG
TAATGGCATTCGCGTCACAGAAGACATTTGGGTTTTGTTCGAAACCTCACATTCAACCAC
CAATTTTTCCATACAATTCACCACCACCGTCCCCTTACCAGTATCCCTCACCTCCTTTCA
ACTACAAGTCCCCGCCGTTGCCAAATCAGTTTTCACCCCCTCCATTCAACAAGTTTCCAC
CTCCATCTCACCAGTATCCATCACCTCCGCAGAGTTCCTACCATTCACCACCACCCTATC
AGTATACACCTCCAAACAGCTACCAAGCTCCACCAACATCTTACAATCACCCGCCACCCC
CATATGGATACAATTCTCCGATCCCACCAACCAACAAGTATTTACCACCCCCATACTACT
TCAACTCCCCACCGCCACAATACCAGCATTCGCCACCTGCAAACAGCTATGTATCGCCAC
CACTAGCTCACCAATATCCCCCACCTCCATACAAGTCACCACCAATACCTCCTTACTACT
TCAACTCTCCACCAGCAAACCATTATTCACCACCTCCATACAACTTTGGATCTTCTCCCC
CAACCTACCAGTACTCTCCACCATTGCTTCCGAAAACTCCAAAATATTTACCTCCTAAAG
TTCCTCTTGAGATGTCTCCACCGGCACATGCAACATCTCCACAGCCTCTGGTCCACTATA
GCCCTCCGCCACCACTGCAGCATGCTGGCATATCATCGACAACACCATCTGTGAACTCCT
ATCAATCCCCGCCACCAGTAAATCAGCTGTCATAAGCATCAGCGATGAGGCTCCTGAAGT
GATCAGGCGTCTGCAGAATAAACGGGAGACTTGAAGTCTACCTCGAGAAGAAGCAGTGGG
TTAATTCGAGTTCCAGGCATCCATCTCAGTATCTAGGATTGTTACGACAGTAACTAGTAT
TGTTTCAGCTTATATCTCATTGCCTAGAGCTAATTTCAGCAGGGTAATCATAAGTCCAGT
AAGCATTGCCAGTGTCTCTAGTTTTCAACTGAATTCAATGTATGTTGTTGGTTCCTAGCA
GCCCATATAAAGCTTTTCTTATGAGCACTTATTACATAAGAAAATCAATCATATGAGAGG